Gcaud1430.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1430.t1
Unique Name	Gcaud1430.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	319

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3343_length_3613_cov_3.731687	contig	NODE_3343_length_3613_cov_3.731687:234..1190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6669.EFX86383
Preferred name	HAUS4
PFAMs	HAUS4
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K16587
GOs	GO:0000086,GO:0000226,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005875,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007098,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0050789,GO:0050794,GO:0051179,GO:0051225,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070652,GO:0070925,GO:0071840,GO:0097711,GO:0120031,GO:0120036,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Evalue	0.000248
EggNOG OGs	2CNGD@1\|root,2QW4I@2759\|Eukaryota,39T5G@33154\|Opisthokonta,3BE17@33208\|Metazoa,3CSMG@33213\|Bilateria
Description	spindle assembly
COG category	S
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1430	Gcaud1430	Gracilaria caudata M_176_S67 male	gene	NODE_3343_length_3613_cov_3.731687 234..1190 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1430.t1.start1	Gcaud1430.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3343_length_3613_cov_3.731687 234..236 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1430.t1.CDS1	Gcaud1430.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3343_length_3613_cov_3.731687 234..1190 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1430.t1.exon1	Gcaud1430.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3343_length_3613_cov_3.731687 234..1190 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1430.t1.stop1	Gcaud1430.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3343_length_3613_cov_3.731687 1188..1190 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1430.t1	Gcaud1430.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3343_length_3613_cov_3.731687 234..1190 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3343_length_3613_cov_3.731687:234..1190+
coding sequence from alignment at NODE_3343_length_3613_cov_3.731687:234..1190+

mRNA sequence

>Gcaud1430.t1 ID=Gcaud1430.t1|Name=Gcaud1430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=319bp
MAMASQHDPTSSLAAALHSGSVYTALSHLDALNALPSAHTSAAVPHHKLL
KLLRCVLPLLLLPRALARYDDASLRAQLLPLVASVFANARGVRAALPAVP
AAQLRAGVAKAVRRLSHAHVDDASAALAQAAATISEQLCDAWGTMLGASA
GASASELASDLLAYTSRMRSCMHSTNKLDVQVLSAHRVAIDVHHAAARLA
HSAVQLDIGARQSVPSYQECRARELIARGSAMSCKLQTLCAQIRSETYTT
ESVRRLRLIATEVCERQQQVERELRVERGRLAEYRALGVQFERIVREVLR
TRQMLEQKEWSRKELALG*

spliced messenger RNA

>Gcaud1430.t1 ID=Gcaud1430.t1|Name=Gcaud1430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=957bp|location=Sequence derived from alignment at NODE_3343_length_3613_cov_3.731687:234..1190+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATGGCTTCGCAGCACGACCCCACGTCGTCGCTAGCCGCCGCGCT
TCACAGCGGCTCCGTGTACACGGCGCTGTCCCATCTCGACGCGCTCAACG
CGCTGCCCAGCGCGCACACCAGCGCCGCCGTGCCGCACCACAAGCTGCTC
AAGCTGCTTCGCTGTGTGCTTCCGCTGCTGCTTCTGCCGCGCGCGCTTGC
ACGCTACGACGATGCGTCGTTACGAGCACAGCTGCTGCCGCTTGTGGCCA
GCGTGTTCGCGAATGCGCGCGGCGTGCGCGCGGCGCTTCCGGCCGTGCCT
GCGGCGCAGTTGCGCGCGGGCGTGGCCAAAGCGGTGCGGCGTCTGTCGCA
CGCGCACGTGGATGATGCGAGCGCCGCGTTGGCGCAGGCGGCCGCCACAA
TCAGTGAGCAGTTGTGCGACGCGTGGGGCACCATGCTGGGCGCGAGCGCC
GGCGCAAGCGCCTCTGAGTTGGCGTCGGATTTATTGGCGTACACATCCAG
AATGCGTTCGTGCATGCACAGCACCAACAAACTGGATGTGCAGGTGTTGA
GCGCTCACCGCGTGGCCATCGACGTGCATCACGCTGCCGCGCGCCTGGCG
CACAGCGCGGTGCAACTGGACATTGGCGCCAGACAGAGCGTGCCCTCTTA
CCAAGAATGCCGCGCGCGCGAGCTCATTGCGCGCGGCAGCGCCATGTCGT
GCAAGCTGCAGACGCTGTGCGCGCAGATTCGAAGTGAGACGTACACCACG
GAGAGCGTGAGAAGGTTGCGGCTGATTGCGACGGAGGTGTGCGAGCGGCA
GCAACAGGTGGAGAGGGAGTTGCGCGTGGAGCGCGGACGGTTGGCCGAGT
ACCGCGCTCTCGGCGTGCAGTTTGAGCGAATTGTGCGCGAGGTTTTGCGC
ACGCGGCAGATGTTGGAGCAGAAGGAGTGGTCCCGAAAGGAGCTGGCTCT
CGGCTGA

protein sequence of Gcaud1430.t1

>Gcaud1430.t1 ID=Gcaud1430.t1|Name=Gcaud1430.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=319bp
MAMASQHDPTSSLAAALHSGSVYTALSHLDALNALPSAHTSAAVPHHKLL
KLLRCVLPLLLLPRALARYDDASLRAQLLPLVASVFANARGVRAALPAVP
AAQLRAGVAKAVRRLSHAHVDDASAALAQAAATISEQLCDAWGTMLGASA
GASASELASDLLAYTSRMRSCMHSTNKLDVQVLSAHRVAIDVHHAAARLA
HSAVQLDIGARQSVPSYQECRARELIARGSAMSCKLQTLCAQIRSETYTT
ESVRRLRLIATEVCERQQQVERELRVERGRLAEYRALGVQFERIVREVLR
TRQMLEQKEWSRKELALG*

mRNA from alignment at NODE_3343_length_3613_cov_3.731687:234..1190+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1430.t1 ID=Gcaud1430.t1|Name=Gcaud1430.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=957bp|location=Sequence derived from alignment at NODE_3343_length_3613_cov_3.731687:234..1190+ (Gracilaria caudata M_176_S67 male)
ATGGCCATGGCTTCGCAGCACGACCCCACGTCGTCGCTAGCCGCCGCGCT
TCACAGCGGCTCCGTGTACACGGCGCTGTCCCATCTCGACGCGCTCAACG
CGCTGCCCAGCGCGCACACCAGCGCCGCCGTGCCGCACCACAAGCTGCTC
AAGCTGCTTCGCTGTGTGCTTCCGCTGCTGCTTCTGCCGCGCGCGCTTGC
ACGCTACGACGATGCGTCGTTACGAGCACAGCTGCTGCCGCTTGTGGCCA
GCGTGTTCGCGAATGCGCGCGGCGTGCGCGCGGCGCTTCCGGCCGTGCCT
GCGGCGCAGTTGCGCGCGGGCGTGGCCAAAGCGGTGCGGCGTCTGTCGCA
CGCGCACGTGGATGATGCGAGCGCCGCGTTGGCGCAGGCGGCCGCCACAA
TCAGTGAGCAGTTGTGCGACGCGTGGGGCACCATGCTGGGCGCGAGCGCC
GGCGCAAGCGCCTCTGAGTTGGCGTCGGATTTATTGGCGTACACATCCAG
AATGCGTTCGTGCATGCACAGCACCAACAAACTGGATGTGCAGGTGTTGA
GCGCTCACCGCGTGGCCATCGACGTGCATCACGCTGCCGCGCGCCTGGCG
CACAGCGCGGTGCAACTGGACATTGGCGCCAGACAGAGCGTGCCCTCTTA
CCAAGAATGCCGCGCGCGCGAGCTCATTGCGCGCGGCAGCGCCATGTCGT
GCAAGCTGCAGACGCTGTGCGCGCAGATTCGAAGTGAGACGTACACCACG
GAGAGCGTGAGAAGGTTGCGGCTGATTGCGACGGAGGTGTGCGAGCGGCA
GCAACAGGTGGAGAGGGAGTTGCGCGTGGAGCGCGGACGGTTGGCCGAGT
ACCGCGCTCTCGGCGTGCAGTTTGAGCGAATTGTGCGCGAGGTTTTGCGC
ACGCGGCAGATGTTGGAGCAGAAGGAGTGGTCCCGAAAGGAGCTGGCTCT
CGGCTGA

Coding sequence (CDS) from alignment at NODE_3343_length_3613_cov_3.731687:234..1190+

>Gcaud1430.t1 ID=Gcaud1430.t1|Name=Gcaud1430.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=957bp|location=Sequence derived from alignment at NODE_3343_length_3613_cov_3.731687:234..1190+ (Gracilaria caudata M_176_S67 male)
ATGGCCATGGCTTCGCAGCACGACCCCACGTCGTCGCTAGCCGCCGCGCT
TCACAGCGGCTCCGTGTACACGGCGCTGTCCCATCTCGACGCGCTCAACG
CGCTGCCCAGCGCGCACACCAGCGCCGCCGTGCCGCACCACAAGCTGCTC
AAGCTGCTTCGCTGTGTGCTTCCGCTGCTGCTTCTGCCGCGCGCGCTTGC
ACGCTACGACGATGCGTCGTTACGAGCACAGCTGCTGCCGCTTGTGGCCA
GCGTGTTCGCGAATGCGCGCGGCGTGCGCGCGGCGCTTCCGGCCGTGCCT
GCGGCGCAGTTGCGCGCGGGCGTGGCCAAAGCGGTGCGGCGTCTGTCGCA
CGCGCACGTGGATGATGCGAGCGCCGCGTTGGCGCAGGCGGCCGCCACAA
TCAGTGAGCAGTTGTGCGACGCGTGGGGCACCATGCTGGGCGCGAGCGCC
GGCGCAAGCGCCTCTGAGTTGGCGTCGGATTTATTGGCGTACACATCCAG
AATGCGTTCGTGCATGCACAGCACCAACAAACTGGATGTGCAGGTGTTGA
GCGCTCACCGCGTGGCCATCGACGTGCATCACGCTGCCGCGCGCCTGGCG
CACAGCGCGGTGCAACTGGACATTGGCGCCAGACAGAGCGTGCCCTCTTA
CCAAGAATGCCGCGCGCGCGAGCTCATTGCGCGCGGCAGCGCCATGTCGT
GCAAGCTGCAGACGCTGTGCGCGCAGATTCGAAGTGAGACGTACACCACG
GAGAGCGTGAGAAGGTTGCGGCTGATTGCGACGGAGGTGTGCGAGCGGCA
GCAACAGGTGGAGAGGGAGTTGCGCGTGGAGCGCGGACGGTTGGCCGAGT
ACCGCGCTCTCGGCGTGCAGTTTGAGCGAATTGTGCGCGAGGTTTTGCGC
ACGCGGCAGATGTTGGAGCAGAAGGAGTGGTCCCGAAAGGAGCTGGCTCT
CGGCTGA