Gcaud7919.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7919.t1
Unique NameGcaud7919.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length331
Homology
BLAST of Gcaud7919.t1 vs. uniprot
Match: A0A2V3IYL2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYL2_9FLOR)

HSP 1 Score: 373 bits (957), Expect = 3.940e-126
Identity = 195/314 (62.10%), Postives = 244/314 (77.71%), Query Frame = 0
Query:    1 MELEHLRKICSSYMALFT-AYRQRVTVPTSLALHSELEWFLVDQPILPTLLTAHALFASLNIYRLTRGTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLFTHSSNHMLLYVTLAWYAVNHYAIVRRLLQIRAVAAVLSFTAMAAKSRSIFNFIDEHHARFPGAVAGAIALGGLSGSGGSLFVTLERIVQQGFSAAGELSAPGWGFKSAYIAAASYYIATDPHMILRSSTSSIKYAVHPRAARFWIALFLCAHAAIETLVGRHINPVYVLEQLFFSLTGVRKHSGTVDTDGA--DGVARRETAATVQRAWTAYD 311
            M+L+ ++KI +SY+ L + AY          ++H  L+WFL+DQP++P LLTAHALFASLN+YRLT+G QFWLKS VLT+FAAFGGSTLASVLCAKPAPLFT SSN M+L++TLAWY +N   + R LL  R ++A+LSFTAMAAKSR+IF FIDE++ RF    AGAI LGGL+G GGS F+T+ERIVQ GF+A  ELSAPGWGFKSAYIAAA YYIATDPHMILR+    ++YAV  R A+FWIAL LC HA +E+L+GRHIN V+VLE++FF++TGVRK+S + + D    DG    + +  V+RAWTA D
Sbjct:    1 MDLDSVQKIANSYLHLASDAYDALQNHYRYYSVHDNLKWFLLDQPVVPLLLTAHALFASLNVYRLTKGRQFWLKSFVLTMFAAFGGSTLASVLCAKPAPLFTKSSNTMMLHITLAWYIINQSKLTRALLTFRPISALLSFTAMAAKSRTIFAFIDEYNRRFRHQAAGAIVLGGLAGCGGSFFMTIERIVQHGFAARSELSAPGWGFKSAYIAAACYYIATDPHMILRNWFIPLQYAVDKREAKFWIALALCLHAGVESLIGRHINVVFVLEEVFFAVTGVRKYSESEEDDAHLDDGQDGDKPSEEVKRAWTARD 314          
BLAST of Gcaud7919.t1 vs. uniprot
Match: S0F2W2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F2W2_CHOCR)

HSP 1 Score: 288 bits (737), Expect = 8.140e-93
Identity = 150/281 (53.38%), Postives = 191/281 (67.97%), Query Frame = 0
Query:    1 MELEHLRKICSSYMALFTAYRQRVTVPTSLALHSELEWFLVDQPILPTLLTAHALFASLNIYRLTRGTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLFTHSSNHMLLYVTLAWYAVNHYAIVRRLLQIRAVAAVLSFTAMAAKSRSIFNFIDEHHARFPGAVAGAIALGGLSGSGGSLFVTLERIVQQGFSAAGELSAPGWGFKSAYIAAASYYIATDPHMILRSSTSSIKYAVHPRAARFWIALFLCAHAAIETLVGRHINPVYVLEQLFFSLTGVRK 281
            M+ EHL K+ SSY  +        T  ++   HS L WFL+D PI+P LL  H  FA+LNI+R+T G QFWLK+LVLT FAAFGGSTLA+VL  +PAPLFT SSN+M+ YVT+AWY +NH    R +L  R V AVL+F A AAK RSI +F+D    RFP AV GA+ L GL+GSGG+LFVTLE+IVQ G   + + S PGW FKSAY+AA  YY+ATDP   + +              RF ++L LC HAA +TL GRH+NP+Y++E++  +LTGVRK
Sbjct:    1 MQREHLDKVLSSYQHIGNVVYDMTTSSSARDAHSLLRWFLLDMPIVPFLLAFHCTFAALNIHRVTSGRQFWLKTLVLTTFAAFGGSTLANVLSGQPAPLFTVSSNYMMSYVTIAWYVINHSRAARAVLSFRPVLAVLAFGATAAKVRSILSFMDGFVVRFPDAVLGAVVLSGLAGSGGALFVTLEKIVQDGLQTSSDFSNPGWSFKSAYLAACVYYVATDPVGWIAAHAPFATVTFDKEEVRFAVSLALCTHAAFDTLYGRHVNPLYLVEEVLCALTGVRK 281          
BLAST of Gcaud7919.t1 vs. uniprot
Match: A0A1X6P0W1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0W1_PORUM)

HSP 1 Score: 194 bits (492), Expect = 1.040e-55
Identity = 113/245 (46.12%), Postives = 149/245 (60.82%), Query Frame = 0
Query:   32 LHSELEWFLVDQPILPTLLTAHALFASLNIYRLTRGTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLFTHSSNHMLLYVTLAWYAVNHYAIVRRLLQIRAVAAVLSFTAMAAKSRSIFNFIDEHHARFPGAVAGAIALGGLSGSGGSLFVTLERIVQQGFSAAGELSAPGWGFKSAYIAAASYYIATDPHMILRSSTSSIKYAVHPRAARFWIALFLCAHAAIETLVGRHINPVYVLEQLFFSL 276
            LH       +D P+ P LL AH L+A+   + LT G Q WLKS VLT+FAAFGGST+A+VL  +PAPLFT ++N M+    LAWY VN     R LL++R V+AVL + A AAK RSIF  +D     FP A AG + LGGLSG GGSLF +LERI   G  +  ELSAPGW FK+A+++A  YY+ TDP  ++ +                +++  LCAHA + TL G   NP+  +E +  S+
Sbjct:   32 LHGWARHIALDLPVFPYLLFAHCLYAAERTHALTAGRQHWLKSYVLTLFAAFGGSTMAAVLSGRPAPLFTTTANLMMPMQALAWYLVNVVTPFRALLRLRIVSAVLVYFATAAKVRSIFGAVDGMVDVFPDAWAGIVVLGGLSGCGGSLFTSLERINMYGRGSVSELSAPGWPFKAAFLSAFLYYVGTDPTGLVAARVGVKVLPWTKDEVCLFVSAGLCAHAVLCTLYGATFNPLRPVEVVLSSV 276          
BLAST of Gcaud7919.t1 vs. uniprot
Match: A0A7S1XDX8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDX8_9RHOD)

HSP 1 Score: 127 bits (319), Expect = 6.540e-32
Identity = 73/158 (46.20%), Postives = 103/158 (65.19%), Query Frame = 0
Query:   35 ELEWFLVDQPILPTLLTAHALFASLNIYRLTRGTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLFTHS-SNHMLLYVTLAWYAVNHYAIVRRLLQIRAVAAVLSFTAMAAKSRSIFNFIDEHHARFPGAVAGAIALGGLSGSGGSLFVTLERIVQQG 191
            +L W+L   P+ P L+ AHALFA+   +R+T+G+QFW+KS+VLT   AFGGS +AS+L   P PL T    N ++LY+ +AW+ ++    VRR+ + R V  +LS  A AAK R+I  F+D      PGA   A  LGGL+GSGGSLF +LE  +++G
Sbjct:   33 DLAWYL-HIPVFPGLVFAHALFAADAAHRMTQGSQFWVKSVVLTYLLAFGGSHVASLLAGFPTPLVTAGVGNRIVLYLVVAWWLIHMVEPVRRVYRWRPVHTILSIIAAAAKCRAIITFVDRMVVERPGAQVAAFLLGGLAGSGGSLFASLEIKIRRG 189          
BLAST of Gcaud7919.t1 vs. uniprot
Match: M2W844_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W844_GALSU)

HSP 1 Score: 89.0 bits (219), Expect = 1.150e-16
Identity = 84/264 (31.82%), Postives = 132/264 (50.00%), Query Frame = 0
Query:   47 PTLLTAHALFASLNIYRLTR-GTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLFTHSSNHMLLYVTLAWYAVN---HYAIVRRLLQIRAVAAVLSFTAMAAKSRSIFNFIDEHHARFP--GAVAGAIALGGLSGSGGSLFVTLERIVQQGFSAA-GELSAPGWGFKSAYIAAASYYIATDPHMILRSSTSSIKYAVHPRAARFW--IALFLCAHAAIET------LVGRHINPVYVLEQLFFSLTGVRKHSGTVDTDGADGVA 295
            P L+  H L   L + +L     Q+WLK+ V++   AFGGST+A +LC K  P  +  ++ ++    +AW+ V+    + +V R   +RA  A L   A  AK+RSI  FID+ H  FP  G V G + LG ++G GG+LF+ +E   + G + +  ELS P    KSA+  +  Y +A         +  S+++      +R +  I LF+  H+ +E       L G  ++P+   EQ+  SL  +R    TVD      VA
Sbjct:    3 PFLVFCHVLQVILKLDQLPGFAQQYWLKTYVVSFCVAFGGSTIAHILCGKVVPWLSFPNDRLVATTFVAWWLVHCLPWFHLVSRWSLVRATIAGL---AAVAKARSIMQFIDDVHKWFPIGGGVLGNVVLGTIAGCGGNLFLIVEEKWRVGSTCSVSELSRPTHNLKSAFCISLIYTVARRKRWQY-GNYLSLQWEPWLPLSRVYKCICLFMFVHSWVEEYTGCVHLFGLLLSPI---EQMACSLFRIRV---TVDPRTTSSVA 256          
The following BLAST results are available for this feature:
BLAST of Gcaud7919.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IYL2_9FLOR3.940e-12662.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
S0F2W2_CHOCR8.140e-9353.38Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P0W1_PORUM1.040e-5546.12Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1XDX8_9RHOD6.540e-3246.20Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
M2W844_GALSU1.150e-1631.82Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007866TRIC channelPFAMPF05197TRICcoord: 77..212
e-value: 6.4E-8
score: 32.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 125..330
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..73
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..44
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..62
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 93..106
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..124
NoneNo IPR availableTMHMMTMhelixcoord: 107..124
NoneNo IPR availableTMHMMTMhelixcoord: 70..92
NoneNo IPR availableTMHMMTMhelixcoord: 160..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_314_length_30704_cov_3.921177contigNODE_314_length_30704_cov_3.921177:15424..16416 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7919.t1Gcaud7919.t1Gracilaria caudata M_176_S67 malemRNANODE_314_length_30704_cov_3.921177 15424..16416 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7919.t1 ID=Gcaud7919.t1|Name=Gcaud7919.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=331bp
MELEHLRKICSSYMALFTAYRQRVTVPTSLALHSELEWFLVDQPILPTLL
TAHALFASLNIYRLTRGTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLF
THSSNHMLLYVTLAWYAVNHYAIVRRLLQIRAVAAVLSFTAMAAKSRSIF
NFIDEHHARFPGAVAGAIALGGLSGSGGSLFVTLERIVQQGFSAAGELSA
PGWGFKSAYIAAASYYIATDPHMILRSSTSSIKYAVHPRAARFWIALFLC
AHAAIETLVGRHINPVYVLEQLFFSLTGVRKHSGTVDTDGADGVARRETA
ATVQRAWTAYDGKQRKGVSKRKGFRLQAES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007866TRIC_channel