Gcaud7919.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7919.t1
Unique Name	Gcaud7919.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_314_length_30704_cov_3.921177	contig	NODE_314_length_30704_cov_3.921177:15424..16416 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002948909.1
PFAMs	TRIC
Max annot lvl	3041\|Chlorophyta
Evalue	1.09e-08
EggNOG OGs	2C4RP@1\|root,2SPXI@2759\|Eukaryota,3802Z@33090\|Viridiplantae,34M23@3041\|Chlorophyta
Description	TRIC channel
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7919	Gcaud7919	Gracilaria caudata M_176_S67 male	gene	NODE_314_length_30704_cov_3.921177 15424..16416 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7919.t1.start1	Gcaud7919.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_314_length_30704_cov_3.921177 15424..15426 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7919.t1.CDS1	Gcaud7919.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_314_length_30704_cov_3.921177 15424..16416 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7919.t1.exon1	Gcaud7919.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_314_length_30704_cov_3.921177 15424..16416 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7919.t1.stop1	Gcaud7919.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_314_length_30704_cov_3.921177 16414..16416 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7919.t1	Gcaud7919.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_314_length_30704_cov_3.921177 15424..16416 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_314_length_30704_cov_3.921177:15424..16416+
coding sequence from alignment at NODE_314_length_30704_cov_3.921177:15424..16416+

mRNA sequence

>Gcaud7919.t1 ID=Gcaud7919.t1|Name=Gcaud7919.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=331bp
MELEHLRKICSSYMALFTAYRQRVTVPTSLALHSELEWFLVDQPILPTLL
TAHALFASLNIYRLTRGTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLF
THSSNHMLLYVTLAWYAVNHYAIVRRLLQIRAVAAVLSFTAMAAKSRSIF
NFIDEHHARFPGAVAGAIALGGLSGSGGSLFVTLERIVQQGFSAAGELSA
PGWGFKSAYIAAASYYIATDPHMILRSSTSSIKYAVHPRAARFWIALFLC
AHAAIETLVGRHINPVYVLEQLFFSLTGVRKHSGTVDTDGADGVARRETA
ATVQRAWTAYDGKQRKGVSKRKGFRLQAES*

spliced messenger RNA

>Gcaud7919.t1 ID=Gcaud7919.t1|Name=Gcaud7919.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=993bp|location=Sequence derived from alignment at NODE_314_length_30704_cov_3.921177:15424..16416+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTGGAGCATCTCCGCAAGATCTGCAGCAGCTACATGGCGCTGTT
CACAGCGTACCGCCAGCGCGTCACCGTGCCCACGTCCCTCGCGCTACACT
CCGAGCTCGAATGGTTTCTAGTGGATCAACCCATTCTACCAACTCTGCTC
ACCGCGCACGCGCTGTTCGCCTCTCTCAACATCTACCGCCTCACGCGCGG
CACGCAGTTCTGGCTCAAGTCGCTGGTGCTCACCATCTTTGCCGCGTTCG
GCGGCTCCACGCTGGCGTCCGTGCTGTGCGCCAAGCCCGCGCCGCTGTTC
ACACACTCCTCCAACCACATGCTACTGTACGTCACGCTCGCGTGGTACGC
CGTGAATCACTACGCGATTGTGCGACGGTTGTTGCAAATTCGGGCTGTTG
CGGCGGTGCTGTCTTTCACAGCGATGGCTGCTAAATCTCGCTCCATCTTC
AATTTCATCGACGAGCATCACGCACGCTTCCCCGGCGCAGTGGCGGGCGC
AATCGCGCTGGGTGGACTGTCCGGCTCCGGTGGCTCGTTGTTCGTGACGC
TCGAACGCATCGTTCAGCAAGGCTTCTCCGCCGCCGGCGAACTGTCCGCG
CCGGGCTGGGGTTTCAAAAGCGCGTACATTGCCGCCGCTTCATATTACAT
TGCAACCGATCCTCACATGATACTGAGAAGTTCCACGTCTTCCATCAAGT
ATGCGGTGCATCCGCGCGCGGCGCGCTTTTGGATCGCGCTGTTTCTGTGC
GCGCATGCGGCGATTGAAACGTTGGTTGGACGACATATCAACCCGGTTTA
CGTGCTGGAGCAGCTGTTCTTTTCGCTCACGGGCGTGAGAAAGCACTCTG
GCACGGTTGACACGGACGGCGCTGATGGCGTGGCGCGACGGGAGACGGCG
GCAACGGTTCAGCGCGCGTGGACTGCGTACGATGGCAAGCAAAGAAAAGG
AGTGTCGAAGCGGAAGGGCTTTCGACTCCAAGCAGAGTCATAG

protein sequence of Gcaud7919.t1

>Gcaud7919.t1 ID=Gcaud7919.t1|Name=Gcaud7919.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=331bp
MELEHLRKICSSYMALFTAYRQRVTVPTSLALHSELEWFLVDQPILPTLL
TAHALFASLNIYRLTRGTQFWLKSLVLTIFAAFGGSTLASVLCAKPAPLF
THSSNHMLLYVTLAWYAVNHYAIVRRLLQIRAVAAVLSFTAMAAKSRSIF
NFIDEHHARFPGAVAGAIALGGLSGSGGSLFVTLERIVQQGFSAAGELSA
PGWGFKSAYIAAASYYIATDPHMILRSSTSSIKYAVHPRAARFWIALFLC
AHAAIETLVGRHINPVYVLEQLFFSLTGVRKHSGTVDTDGADGVARRETA
ATVQRAWTAYDGKQRKGVSKRKGFRLQAES*

mRNA from alignment at NODE_314_length_30704_cov_3.921177:15424..16416+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7919.t1 ID=Gcaud7919.t1|Name=Gcaud7919.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=993bp|location=Sequence derived from alignment at NODE_314_length_30704_cov_3.921177:15424..16416+ (Gracilaria caudata M_176_S67 male)
ATGGAACTGGAGCATCTCCGCAAGATCTGCAGCAGCTACATGGCGCTGTT
CACAGCGTACCGCCAGCGCGTCACCGTGCCCACGTCCCTCGCGCTACACT
CCGAGCTCGAATGGTTTCTAGTGGATCAACCCATTCTACCAACTCTGCTC
ACCGCGCACGCGCTGTTCGCCTCTCTCAACATCTACCGCCTCACGCGCGG
CACGCAGTTCTGGCTCAAGTCGCTGGTGCTCACCATCTTTGCCGCGTTCG
GCGGCTCCACGCTGGCGTCCGTGCTGTGCGCCAAGCCCGCGCCGCTGTTC
ACACACTCCTCCAACCACATGCTACTGTACGTCACGCTCGCGTGGTACGC
CGTGAATCACTACGCGATTGTGCGACGGTTGTTGCAAATTCGGGCTGTTG
CGGCGGTGCTGTCTTTCACAGCGATGGCTGCTAAATCTCGCTCCATCTTC
AATTTCATCGACGAGCATCACGCACGCTTCCCCGGCGCAGTGGCGGGCGC
AATCGCGCTGGGTGGACTGTCCGGCTCCGGTGGCTCGTTGTTCGTGACGC
TCGAACGCATCGTTCAGCAAGGCTTCTCCGCCGCCGGCGAACTGTCCGCG
CCGGGCTGGGGTTTCAAAAGCGCGTACATTGCCGCCGCTTCATATTACAT
TGCAACCGATCCTCACATGATACTGAGAAGTTCCACGTCTTCCATCAAGT
ATGCGGTGCATCCGCGCGCGGCGCGCTTTTGGATCGCGCTGTTTCTGTGC
GCGCATGCGGCGATTGAAACGTTGGTTGGACGACATATCAACCCGGTTTA
CGTGCTGGAGCAGCTGTTCTTTTCGCTCACGGGCGTGAGAAAGCACTCTG
GCACGGTTGACACGGACGGCGCTGATGGCGTGGCGCGACGGGAGACGGCG
GCAACGGTTCAGCGCGCGTGGACTGCGTACGATGGCAAGCAAAGAAAAGG
AGTGTCGAAGCGGAAGGGCTTTCGACTCCAAGCAGAGTCATAG

Coding sequence (CDS) from alignment at NODE_314_length_30704_cov_3.921177:15424..16416+

>Gcaud7919.t1 ID=Gcaud7919.t1|Name=Gcaud7919.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=993bp|location=Sequence derived from alignment at NODE_314_length_30704_cov_3.921177:15424..16416+ (Gracilaria caudata M_176_S67 male)
ATGGAACTGGAGCATCTCCGCAAGATCTGCAGCAGCTACATGGCGCTGTT
CACAGCGTACCGCCAGCGCGTCACCGTGCCCACGTCCCTCGCGCTACACT
CCGAGCTCGAATGGTTTCTAGTGGATCAACCCATTCTACCAACTCTGCTC
ACCGCGCACGCGCTGTTCGCCTCTCTCAACATCTACCGCCTCACGCGCGG
CACGCAGTTCTGGCTCAAGTCGCTGGTGCTCACCATCTTTGCCGCGTTCG
GCGGCTCCACGCTGGCGTCCGTGCTGTGCGCCAAGCCCGCGCCGCTGTTC
ACACACTCCTCCAACCACATGCTACTGTACGTCACGCTCGCGTGGTACGC
CGTGAATCACTACGCGATTGTGCGACGGTTGTTGCAAATTCGGGCTGTTG
CGGCGGTGCTGTCTTTCACAGCGATGGCTGCTAAATCTCGCTCCATCTTC
AATTTCATCGACGAGCATCACGCACGCTTCCCCGGCGCAGTGGCGGGCGC
AATCGCGCTGGGTGGACTGTCCGGCTCCGGTGGCTCGTTGTTCGTGACGC
TCGAACGCATCGTTCAGCAAGGCTTCTCCGCCGCCGGCGAACTGTCCGCG
CCGGGCTGGGGTTTCAAAAGCGCGTACATTGCCGCCGCTTCATATTACAT
TGCAACCGATCCTCACATGATACTGAGAAGTTCCACGTCTTCCATCAAGT
ATGCGGTGCATCCGCGCGCGGCGCGCTTTTGGATCGCGCTGTTTCTGTGC
GCGCATGCGGCGATTGAAACGTTGGTTGGACGACATATCAACCCGGTTTA
CGTGCTGGAGCAGCTGTTCTTTTCGCTCACGGGCGTGAGAAAGCACTCTG
GCACGGTTGACACGGACGGCGCTGATGGCGTGGCGCGACGGGAGACGGCG
GCAACGGTTCAGCGCGCGTGGACTGCGTACGATGGCAAGCAAAGAAAAGG
AGTGTCGAAGCGGAAGGGCTTTCGACTCCAAGCAGAGTCATAG