Gcaud8248.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8248.t1
Unique Name	Gcaud8248.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:23544..25013 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8248	Gcaud8248	Gracilaria caudata M_176_S67 male	gene	NODE_308_length_31041_cov_4.463651 23544..25013 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8248.t1.stop1	Gcaud8248.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_308_length_31041_cov_4.463651 23544..23546 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8248.t1.CDS1	Gcaud8248.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 23544..25013 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8248.t1.exon1	Gcaud8248.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 23544..25013 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8248.t1.start1	Gcaud8248.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_308_length_31041_cov_4.463651 25011..25013 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8248.t1	Gcaud8248.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_308_length_31041_cov_4.463651 23544..25013 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_308_length_31041_cov_4.463651:23544..25013-
coding sequence from alignment at NODE_308_length_31041_cov_4.463651:23544..25013-

mRNA sequence

>Gcaud8248.t1 ID=Gcaud8248.t1|Name=Gcaud8248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=490bp
MSPFRLNIDRSDNPLGKHQRPLLKAAMPNPPQQKTASITVQDSHPTDKAE
RRRDSTENPSFSKKELVSHTAKLFLSWLTGMVPNRTHLQTSSQIWECVLS
ALNGNDFESARKSMLNLNKHPSNSRTAFVNRRRALSILAVLVAVDEWSAK
TPLSSQNSQLLSAGIAHGSPDAIAFGSWFYLKERWNSSPVPFEEMGLLLV
RAARHGHGACQAVLGIMLSPLSKLSSWYRRKLLTTNELGAEHEHLNRQTS
QPKLHGQAKRKTVQKHDVRRSLETRLNQDVQMLKEAASRGFFLAIDHLER
EAKKRRLNSGKRRNNEYSCLTTREQRVSAQEFFYCVQNAANQQIPYCTVK
LAELLQTGIGCQKNEDDARLWLQTAANLNVPVAMREVHANAKTENQRVTA
TLTKRKSPEREFRERNSFAEEHRANAILKRNFILQQRYEERISRWQEEQE
KRKRVLAFHVIGNLSSKISENMSSAVLQFLFEREKEGWL*

spliced messenger RNA

>Gcaud8248.t1 ID=Gcaud8248.t1|Name=Gcaud8248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:23544..25013- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCCTTTCGATTGAACATAGACCGCAGCGATAATCCGCTCGGAAA
ACATCAAAGGCCGTTGCTAAAGGCTGCGATGCCCAATCCCCCACAACAGA
AGACAGCGAGTATCACTGTTCAAGATTCGCATCCAACAGACAAAGCGGAG
AGACGCCGTGATTCCACAGAGAATCCCTCATTTTCGAAAAAGGAACTCGT
CTCCCACACCGCTAAATTGTTCCTCTCGTGGCTAACAGGAATGGTTCCTA
ATCGAACTCACCTGCAAACGTCATCGCAAATTTGGGAATGCGTGCTTTCT
GCCCTGAACGGAAACGACTTTGAGAGCGCCAGAAAATCCATGCTGAACCT
GAACAAGCATCCATCCAACAGCAGGACGGCATTCGTCAATCGTCGTCGCG
CTCTCTCAATCCTCGCTGTTCTTGTGGCGGTAGATGAATGGTCTGCTAAG
ACTCCATTGTCCTCGCAAAACTCACAATTGCTTTCAGCCGGTATAGCTCA
TGGATCCCCAGATGCCATCGCGTTCGGCTCGTGGTTTTACTTAAAAGAGC
GTTGGAACTCTTCACCAGTGCCCTTTGAAGAGATGGGCCTTTTGCTTGTG
CGAGCAGCGCGACATGGACATGGTGCTTGTCAGGCAGTCCTCGGCATTAT
GTTGTCTCCTTTATCCAAATTGTCCAGTTGGTACCGACGAAAGCTACTGA
CAACAAATGAGCTGGGCGCAGAGCATGAGCATCTGAATCGTCAGACATCT
CAACCTAAACTTCATGGACAAGCAAAGCGTAAAACTGTACAAAAACATGA
TGTCAGGCGTAGTTTGGAAACGAGACTAAATCAAGACGTCCAGATGCTTA
AAGAAGCAGCTTCGCGAGGCTTTTTCCTTGCTATAGATCATCTTGAAAGA
GAAGCAAAAAAGCGAAGATTGAACTCAGGAAAACGAAGGAACAACGAGTA
TTCATGCTTGACAACCCGTGAGCAGCGAGTTTCAGCTCAAGAATTCTTCT
ATTGCGTCCAGAACGCAGCGAATCAGCAAATTCCGTATTGTACTGTCAAA
CTCGCTGAACTTCTTCAGACTGGCATTGGATGCCAGAAGAATGAAGATGA
TGCACGTCTATGGCTGCAAACTGCCGCAAACCTGAATGTGCCGGTAGCAA
TGCGTGAAGTTCATGCGAACGCAAAAACAGAGAACCAACGAGTAACGGCA
ACGTTGACCAAACGAAAATCGCCAGAAAGAGAATTCCGTGAGAGGAACAG
TTTTGCAGAAGAACATCGTGCAAACGCCATATTAAAAAGGAACTTCATTC
TCCAGCAGCGTTATGAAGAACGCATTTCTAGATGGCAAGAAGAACAGGAG
AAACGAAAACGAGTCTTGGCTTTCCATGTTATTGGCAATCTGTCGTCAAA
AATTTCGGAGAACATGAGCTCAGCTGTTCTGCAGTTTCTGTTCGAACGCG
AGAAAGAGGGTTGGTTGTAG

protein sequence of Gcaud8248.t1

>Gcaud8248.t1 ID=Gcaud8248.t1|Name=Gcaud8248.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=490bp
MSPFRLNIDRSDNPLGKHQRPLLKAAMPNPPQQKTASITVQDSHPTDKAE
RRRDSTENPSFSKKELVSHTAKLFLSWLTGMVPNRTHLQTSSQIWECVLS
ALNGNDFESARKSMLNLNKHPSNSRTAFVNRRRALSILAVLVAVDEWSAK
TPLSSQNSQLLSAGIAHGSPDAIAFGSWFYLKERWNSSPVPFEEMGLLLV
RAARHGHGACQAVLGIMLSPLSKLSSWYRRKLLTTNELGAEHEHLNRQTS
QPKLHGQAKRKTVQKHDVRRSLETRLNQDVQMLKEAASRGFFLAIDHLER
EAKKRRLNSGKRRNNEYSCLTTREQRVSAQEFFYCVQNAANQQIPYCTVK
LAELLQTGIGCQKNEDDARLWLQTAANLNVPVAMREVHANAKTENQRVTA
TLTKRKSPEREFRERNSFAEEHRANAILKRNFILQQRYEERISRWQEEQE
KRKRVLAFHVIGNLSSKISENMSSAVLQFLFEREKEGWL*

mRNA from alignment at NODE_308_length_31041_cov_4.463651:23544..25013-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8248.t1 ID=Gcaud8248.t1|Name=Gcaud8248.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:23544..25013- (Gracilaria caudata M_176_S67 male)
ATGTCACCCTTTCGATTGAACATAGACCGCAGCGATAATCCGCTCGGAAA
ACATCAAAGGCCGTTGCTAAAGGCTGCGATGCCCAATCCCCCACAACAGA
AGACAGCGAGTATCACTGTTCAAGATTCGCATCCAACAGACAAAGCGGAG
AGACGCCGTGATTCCACAGAGAATCCCTCATTTTCGAAAAAGGAACTCGT
CTCCCACACCGCTAAATTGTTCCTCTCGTGGCTAACAGGAATGGTTCCTA
ATCGAACTCACCTGCAAACGTCATCGCAAATTTGGGAATGCGTGCTTTCT
GCCCTGAACGGAAACGACTTTGAGAGCGCCAGAAAATCCATGCTGAACCT
GAACAAGCATCCATCCAACAGCAGGACGGCATTCGTCAATCGTCGTCGCG
CTCTCTCAATCCTCGCTGTTCTTGTGGCGGTAGATGAATGGTCTGCTAAG
ACTCCATTGTCCTCGCAAAACTCACAATTGCTTTCAGCCGGTATAGCTCA
TGGATCCCCAGATGCCATCGCGTTCGGCTCGTGGTTTTACTTAAAAGAGC
GTTGGAACTCTTCACCAGTGCCCTTTGAAGAGATGGGCCTTTTGCTTGTG
CGAGCAGCGCGACATGGACATGGTGCTTGTCAGGCAGTCCTCGGCATTAT
GTTGTCTCCTTTATCCAAATTGTCCAGTTGGTACCGACGAAAGCTACTGA
CAACAAATGAGCTGGGCGCAGAGCATGAGCATCTGAATCGTCAGACATCT
CAACCTAAACTTCATGGACAAGCAAAGCGTAAAACTGTACAAAAACATGA
TGTCAGGCGTAGTTTGGAAACGAGACTAAATCAAGACGTCCAGATGCTTA
AAGAAGCAGCTTCGCGAGGCTTTTTCCTTGCTATAGATCATCTTGAAAGA
GAAGCAAAAAAGCGAAGATTGAACTCAGGAAAACGAAGGAACAACGAGTA
TTCATGCTTGACAACCCGTGAGCAGCGAGTTTCAGCTCAAGAATTCTTCT
ATTGCGTCCAGAACGCAGCGAATCAGCAAATTCCGTATTGTACTGTCAAA
CTCGCTGAACTTCTTCAGACTGGCATTGGATGCCAGAAGAATGAAGATGA
TGCACGTCTATGGCTGCAAACTGCCGCAAACCTGAATGTGCCGGTAGCAA
TGCGTGAAGTTCATGCGAACGCAAAAACAGAGAACCAACGAGTAACGGCA
ACGTTGACCAAACGAAAATCGCCAGAAAGAGAATTCCGTGAGAGGAACAG
TTTTGCAGAAGAACATCGTGCAAACGCCATATTAAAAAGGAACTTCATTC
TCCAGCAGCGTTATGAAGAACGCATTTCTAGATGGCAAGAAGAACAGGAG
AAACGAAAACGAGTCTTGGCTTTCCATGTTATTGGCAATCTGTCGTCAAA
AATTTCGGAGAACATGAGCTCAGCTGTTCTGCAGTTTCTGTTCGAACGCG
AGAAAGAGGGTTGGTTGTAG

Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:23544..25013-

>Gcaud8248.t1 ID=Gcaud8248.t1|Name=Gcaud8248.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1470bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:23544..25013- (Gracilaria caudata M_176_S67 male)
ATGTCACCCTTTCGATTGAACATAGACCGCAGCGATAATCCGCTCGGAAA
ACATCAAAGGCCGTTGCTAAAGGCTGCGATGCCCAATCCCCCACAACAGA
AGACAGCGAGTATCACTGTTCAAGATTCGCATCCAACAGACAAAGCGGAG
AGACGCCGTGATTCCACAGAGAATCCCTCATTTTCGAAAAAGGAACTCGT
CTCCCACACCGCTAAATTGTTCCTCTCGTGGCTAACAGGAATGGTTCCTA
ATCGAACTCACCTGCAAACGTCATCGCAAATTTGGGAATGCGTGCTTTCT
GCCCTGAACGGAAACGACTTTGAGAGCGCCAGAAAATCCATGCTGAACCT
GAACAAGCATCCATCCAACAGCAGGACGGCATTCGTCAATCGTCGTCGCG
CTCTCTCAATCCTCGCTGTTCTTGTGGCGGTAGATGAATGGTCTGCTAAG
ACTCCATTGTCCTCGCAAAACTCACAATTGCTTTCAGCCGGTATAGCTCA
TGGATCCCCAGATGCCATCGCGTTCGGCTCGTGGTTTTACTTAAAAGAGC
GTTGGAACTCTTCACCAGTGCCCTTTGAAGAGATGGGCCTTTTGCTTGTG
CGAGCAGCGCGACATGGACATGGTGCTTGTCAGGCAGTCCTCGGCATTAT
GTTGTCTCCTTTATCCAAATTGTCCAGTTGGTACCGACGAAAGCTACTGA
CAACAAATGAGCTGGGCGCAGAGCATGAGCATCTGAATCGTCAGACATCT
CAACCTAAACTTCATGGACAAGCAAAGCGTAAAACTGTACAAAAACATGA
TGTCAGGCGTAGTTTGGAAACGAGACTAAATCAAGACGTCCAGATGCTTA
AAGAAGCAGCTTCGCGAGGCTTTTTCCTTGCTATAGATCATCTTGAAAGA
GAAGCAAAAAAGCGAAGATTGAACTCAGGAAAACGAAGGAACAACGAGTA
TTCATGCTTGACAACCCGTGAGCAGCGAGTTTCAGCTCAAGAATTCTTCT
ATTGCGTCCAGAACGCAGCGAATCAGCAAATTCCGTATTGTACTGTCAAA
CTCGCTGAACTTCTTCAGACTGGCATTGGATGCCAGAAGAATGAAGATGA
TGCACGTCTATGGCTGCAAACTGCCGCAAACCTGAATGTGCCGGTAGCAA
TGCGTGAAGTTCATGCGAACGCAAAAACAGAGAACCAACGAGTAACGGCA
ACGTTGACCAAACGAAAATCGCCAGAAAGAGAATTCCGTGAGAGGAACAG
TTTTGCAGAAGAACATCGTGCAAACGCCATATTAAAAAGGAACTTCATTC
TCCAGCAGCGTTATGAAGAACGCATTTCTAGATGGCAAGAAGAACAGGAG
AAACGAAAACGAGTCTTGGCTTTCCATGTTATTGGCAATCTGTCGTCAAA
AATTTCGGAGAACATGAGCTCAGCTGTTCTGCAGTTTCTGTTCGAACGCG
AGAAAGAGGGTTGGTTGTAG