Gcaud3106.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3106.t1
Unique Name	Gcaud3106.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	197

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_304_length_31134_cov_4.503817	contig	NODE_304_length_31134_cov_4.503817:23665..24255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN158CT
Preferred name	MRPS15
PFAMs	Ribosomal_S15
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02956,ko:K05061
KEGG Pathway	ko03010,ko04060,ko04151,ko04630,ko04640,ko05200,map03010,map04060,map04151,map04630,map04640,map05200
KEGG Module	M00178,M00179
GOs	GO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0040008,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0065007,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue	2.44e-22
EggNOG OGs	COG0184@1\|root,KOG2815@2759\|Eukaryota
Description	structural constituent of ribosome
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011,ko04050,ko04090

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3106	Gcaud3106	Gracilaria caudata M_176_S67 male	gene	NODE_304_length_31134_cov_4.503817 23665..24255 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3106.t1.start1	Gcaud3106.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_304_length_31134_cov_4.503817 23665..23667 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3106.t1.CDS1	Gcaud3106.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_304_length_31134_cov_4.503817 23665..24255 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3106.t1.exon1	Gcaud3106.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_304_length_31134_cov_4.503817 23665..24255 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3106.t1.stop1	Gcaud3106.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_304_length_31134_cov_4.503817 24253..24255 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3106.t1	Gcaud3106.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_304_length_31134_cov_4.503817 23665..24255 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_304_length_31134_cov_4.503817:23665..24255+
coding sequence from alignment at NODE_304_length_31134_cov_4.503817:23665..24255+

mRNA sequence

>Gcaud3106.t1 ID=Gcaud3106.t1|Name=Gcaud3106.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=197bp
MEDSVSNGEAVSRLTSDSGEMIVDPPVSNPTSEVSEVASETVASTEIDNS
SSVVESAAGEASYDASSGEEFFSTQPGLMGVIDDDDDLDVGEIITPEPPG
YWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDF
SSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLRNL*

spliced messenger RNA

>Gcaud3106.t1 ID=Gcaud3106.t1|Name=Gcaud3106.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:23665..24255+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACTCTGTGTCGAATGGAGAGGCGGTTTCAAGATTGACCTCAGA
TAGTGGCGAGATGATCGTTGATCCACCGGTTTCGAACCCAACATCCGAAG
TGAGTGAAGTTGCTTCCGAAACTGTTGCGTCTACTGAAATCGACAACAGC
TCATCCGTTGTAGAAAGCGCAGCCGGTGAGGCTTCATATGATGCTTCATC
TGGCGAGGAATTCTTCTCCACACAGCCTGGCCTGATGGGCGTGATAGATG
ACGATGATGATTTGGACGTGGGTGAGATCATCACACCTGAGCCACCAGGG
TACTGGAGGAATAGAGTGGCAATCAAGGAAGCTCAGCAGACTTTTAAGCT
GCACGAAACGGATTCTGGTTCACCGGAGTTTCAGATTGCCACATTGACTA
AGAAAATCGAGTATTTGACTACACATTTGAAATCAAACCCGAAGGATTTC
TCTTCAACTCGCGGCTTGCTAAGGATGGTGTCCACTAGACGTAAGCTTTT
GAAATACTTGAAGAAGTGTGACAGCGAGAGGTTTAACAACATTGTCTCCG
GACTGAAGATTCGCATTTCTCAAAAGCTGCGGAACCTTTGA

protein sequence of Gcaud3106.t1

>Gcaud3106.t1 ID=Gcaud3106.t1|Name=Gcaud3106.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
MEDSVSNGEAVSRLTSDSGEMIVDPPVSNPTSEVSEVASETVASTEIDNS
SSVVESAAGEASYDASSGEEFFSTQPGLMGVIDDDDDLDVGEIITPEPPG
YWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDF
SSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLRNL*

mRNA from alignment at NODE_304_length_31134_cov_4.503817:23665..24255+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3106.t1 ID=Gcaud3106.t1|Name=Gcaud3106.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:23665..24255+ (Gracilaria caudata M_176_S67 male)
ATGGAAGACTCTGTGTCGAATGGAGAGGCGGTTTCAAGATTGACCTCAGA
TAGTGGCGAGATGATCGTTGATCCACCGGTTTCGAACCCAACATCCGAAG
TGAGTGAAGTTGCTTCCGAAACTGTTGCGTCTACTGAAATCGACAACAGC
TCATCCGTTGTAGAAAGCGCAGCCGGTGAGGCTTCATATGATGCTTCATC
TGGCGAGGAATTCTTCTCCACACAGCCTGGCCTGATGGGCGTGATAGATG
ACGATGATGATTTGGACGTGGGTGAGATCATCACACCTGAGCCACCAGGG
TACTGGAGGAATAGAGTGGCAATCAAGGAAGCTCAGCAGACTTTTAAGCT
GCACGAAACGGATTCTGGTTCACCGGAGTTTCAGATTGCCACATTGACTA
AGAAAATCGAGTATTTGACTACACATTTGAAATCAAACCCGAAGGATTTC
TCTTCAACTCGCGGCTTGCTAAGGATGGTGTCCACTAGACGTAAGCTTTT
GAAATACTTGAAGAAGTGTGACAGCGAGAGGTTTAACAACATTGTCTCCG
GACTGAAGATTCGCATTTCTCAAAAGCTGCGGAACCTTTGA

Coding sequence (CDS) from alignment at NODE_304_length_31134_cov_4.503817:23665..24255+

>Gcaud3106.t1 ID=Gcaud3106.t1|Name=Gcaud3106.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=591bp|location=Sequence derived from alignment at NODE_304_length_31134_cov_4.503817:23665..24255+ (Gracilaria caudata M_176_S67 male)
ATGGAAGACTCTGTGTCGAATGGAGAGGCGGTTTCAAGATTGACCTCAGA
TAGTGGCGAGATGATCGTTGATCCACCGGTTTCGAACCCAACATCCGAAG
TGAGTGAAGTTGCTTCCGAAACTGTTGCGTCTACTGAAATCGACAACAGC
TCATCCGTTGTAGAAAGCGCAGCCGGTGAGGCTTCATATGATGCTTCATC
TGGCGAGGAATTCTTCTCCACACAGCCTGGCCTGATGGGCGTGATAGATG
ACGATGATGATTTGGACGTGGGTGAGATCATCACACCTGAGCCACCAGGG
TACTGGAGGAATAGAGTGGCAATCAAGGAAGCTCAGCAGACTTTTAAGCT
GCACGAAACGGATTCTGGTTCACCGGAGTTTCAGATTGCCACATTGACTA
AGAAAATCGAGTATTTGACTACACATTTGAAATCAAACCCGAAGGATTTC
TCTTCAACTCGCGGCTTGCTAAGGATGGTGTCCACTAGACGTAAGCTTTT
GAAATACTTGAAGAAGTGTGACAGCGAGAGGTTTAACAACATTGTCTCCG
GACTGAAGATTCGCATTTCTCAAAAGCTGCGGAACCTTTGA