Gcaud3106.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3106.t1
Unique NameGcaud3106.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length197
Homology
BLAST of Gcaud3106.t1 vs. uniprot
Match: A0A2V3IMK0_9FLOR (30S ribosomal protein S15 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMK0_9FLOR)

HSP 1 Score: 153 bits (387), Expect = 2.310e-43
Identity = 78/130 (60.00%), Postives = 100/130 (76.92%), Query Frame = 0
Query:   68 GEEFFSTQPGLMGVIDDDD-DLDVGEIITPEPPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLRNL 196
            G+  F +   L  + ++DD +LD  E+   +PP  W N+  I EAQQ FK+HETD+GSPEFQIATLT +I+YLT HLK NPKD+S+ RGLL+MVSTRR+LLKY+KK D +RF+NIV+GL IR+SQKLR L
Sbjct:   98 GDTSFFSASALGDMPEEDDIELDESELEPLDPPAAWTNKQTIIEAQQKFKIHETDTGSPEFQIATLTTRIKYLTNHLKENPKDYSTARGLLKMVSTRRRLLKYVKKEDPKRFDNIVAGLNIRVSQKLRQL 227          
BLAST of Gcaud3106.t1 vs. uniprot
Match: R7QKX9_CHOCR (30S ribosomal protein S15 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKX9_CHOCR)

HSP 1 Score: 135 bits (341), Expect = 9.010e-37
Identity = 75/138 (54.35%), Postives = 94/138 (68.12%), Query Frame = 0
Query:   74 TQPGLMGVIDDDDDLDVGEIIT----PE-----------PPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLRNL 196
            T   ++G+  DD  +D+G + T    PE           PP  + N   +  AQQ FK HETDSGSPEFQIATLT +I YLT HLK NPKDFSSTRGLL MVSTRR+LLK+LK+ D +RF +I++GL IR+SQ++R L
Sbjct:   65 TTESMIGI--DDAPVDIGSVATATMEPEEDEDSEYEPCAPPQPFINAQNVSAAQQKFKRHETDSGSPEFQIATLTTRIAYLTDHLKKNPKDFSSTRGLLMMVSTRRRLLKFLKREDEQRFTDIIAGLNIRVSQQIREL 200          
BLAST of Gcaud3106.t1 vs. uniprot
Match: A0A1X6PAT2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAT2_PORUM)

HSP 1 Score: 119 bits (297), Expect = 1.230e-30
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 0
Query:   89 DVGEIITPEPPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLRNL 196
            D  E++  E PG  +  +AI E ++  +L+E DSGSPEFQIAT + +IEYLTTH K+NPKD SSTRGL+ MVS RR++LKYL K D  RFN I+  L IR+S++LR L
Sbjct:   52 DATEVLELEAPGPVKTAMAIAELRELARLNENDSGSPEFQIATWSARIEYLTTHAKANPKDHSSTRGLVTMVSKRRRMLKYLAKTDKNRFNAILDKLGIRVSKELRAL 159          
BLAST of Gcaud3106.t1 vs. uniprot
Match: J7G1Z6_9CRYP (30S ribosomal protein S15 n=2 Tax=Eukaryota TaxID=2759 RepID=J7G1Z6_9CRYP)

HSP 1 Score: 111 bits (278), Expect = 3.550e-28
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 0
Query:   96 PEPPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLR 194
            P+P   + N   IKE ++ FK+HE D+GSPE+QIA L+ +I Y+T+H+K NPKDFSSTRGL+ MVS R+KLLKYL+    ERF NI   LKIRI + L+
Sbjct:   34 PQP---YINSKQIKEVREKFKIHEKDTGSPEYQIAALSVRIAYMTSHVKKNPKDFSSTRGLIAMVSARKKLLKYLRSQSKERFLNICLNLKIRIQKDLQ 129          
BLAST of Gcaud3106.t1 vs. uniprot
Match: A9BL88_HEMAN (30S ribosomal protein S15 n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL88_HEMAN)

HSP 1 Score: 108 bits (269), Expect = 8.000e-27
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 0
Query:   92 EIITPEPPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLR 194
            +I +P+P   + N   IKE ++ +++HE D+GS E+QIA L+ +I Y+T H+K NPKDFSSTRGL+ MVS R+KLLKYL+    ERF NI   LKIRI + L+
Sbjct:   30 QISSPQP---YINSKQIKEVREKYRIHEKDTGSSEYQIAALSVRIAYMTAHIKKNPKDFSSTRGLIAMVSARKKLLKYLRSQSKERFLNICVNLKIRIQKDLQ 129          
BLAST of Gcaud3106.t1 vs. uniprot
Match: Q98RM2_GUITH (30S ribosomal protein S15 n=1 Tax=Guillardia theta TaxID=55529 RepID=Q98RM2_GUITH)

HSP 1 Score: 102 bits (255), Expect = 9.290e-25
Identity = 49/100 (49.00%), Postives = 71/100 (71.00%), Query Frame = 0
Query:   92 EIITPEPPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQ 191
            ++ +P+P   + N   ++E +  +K+HE D+GSPE+QIA L+ +I Y+T H+K NPKDFSSTRGL+ MV+ R++LLKYL+  D +RF  I   L IRI Q
Sbjct:   27 QLSSPQP---YINNKNVQEIRNKYKIHEKDTGSPEYQIAALSARISYMTEHVKKNPKDFSSTRGLISMVNARKRLLKYLRNEDKDRFFKICIALNIRIQQ 123          
BLAST of Gcaud3106.t1 vs. uniprot
Match: A0A7S2PJX5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PJX5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.030e-23
Identity = 50/119 (42.02%), Postives = 81/119 (68.07%), Query Frame = 0
Query:   70 EFFSTQPGLMGVIDDDDDLDVGEIITPEPPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIR 188
            +F  +   L  V DD++D     ++  EPP  +  ++ + E ++ F+ H+TD+GSPE+Q+A++T++I YLT HL++NPKDFS+ RGL+ +V+ RR++L YL K D ER+  +V  L IR
Sbjct:   76 DFIVSSSDLDSVEDDEED----GVMEFEPPVGFTYQLKLAEVREQFRRHDTDTGSPEYQVASMTERISYLTKHLQANPKDFSTRRGLVALVNKRRRMLNYLFKEDVERYKTLVDSLGIR 190          
BLAST of Gcaud3106.t1 vs. uniprot
Match: A0A6U3NZ07_9STRA (30S ribosomal protein S15 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NZ07_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.010e-22
Identity = 47/109 (43.12%), Postives = 80/109 (73.39%), Query Frame = 0
Query:   80 GVIDDDDDLDVGEIITPEPPGYWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIR 188
            G +DD++  +  +++ PE   ++ +++ IKE ++ ++ HE+D+GSPE+Q+A +T++I YLT HLK +PKDFS+ RGL+ +V+ RR+LL YL + D +R+  IVS + IR
Sbjct:   68 GDLDDEEAGEDDDLVVPE---WYAHQLRIKELREQYRRHESDTGSPEYQVAGMTERISYLTKHLKEHPKDFSTRRGLVALVNKRRRLLNYLFREDIDRYQTIVSSMGIR 173          
BLAST of Gcaud3106.t1 vs. uniprot
Match: A0A7C6I5R5_9FIRM (30S ribosomal protein S15 n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7C6I5R5_9FIRM)

HSP 1 Score: 93.2 bits (230), Expect = 1.790e-21
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 0
Query:  104 NRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIR 188
            N ++ +E  + FK+HETD+GSPE QIA LT++I +LT HLK + KDF S RGLL+MV  RR LL YLKK + ER+ +IV  L +R
Sbjct:    3 NMISKQEIIEKFKVHETDTGSPEVQIALLTERINHLTEHLKLHKKDFHSRRGLLKMVGQRRGLLNYLKKNNFERYRSIVEQLNLR 87          
BLAST of Gcaud3106.t1 vs. uniprot
Match: A0A2K9EJ00_9FIRM (30S ribosomal protein S15 n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A2K9EJ00_9FIRM)

HSP 1 Score: 92.8 bits (229), Expect = 2.460e-21
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 0
Query:  109 KEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDFSSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIR 188
            +E   T++LHETD+GSPE QIA LTK+IE+LT HLK + KDF S RGLL+MV  RR LL YL++ D ER+  I+  L +R
Sbjct:    7 QEIINTYRLHETDTGSPEVQIAILTKRIEHLTEHLKVHKKDFHSRRGLLKMVGQRRGLLNYLQRVDIERYRAIIEKLNLR 86          
The following BLAST results are available for this feature:
BLAST of Gcaud3106.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMK0_9FLOR2.310e-4360.0030S ribosomal protein S15 n=1 Tax=Gracilariopsis c... [more]
R7QKX9_CHOCR9.010e-3754.3530S ribosomal protein S15 n=1 Tax=Chondrus crispus... [more]
A0A1X6PAT2_PORUM1.230e-3056.48Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
J7G1Z6_9CRYP3.550e-2856.5730S ribosomal protein S15 n=2 Tax=Eukaryota TaxID=... [more]
A9BL88_HEMAN8.000e-2752.4330S ribosomal protein S15 n=1 Tax=Hemiselmis ander... [more]
Q98RM2_GUITH9.290e-2549.0030S ribosomal protein S15 n=1 Tax=Guillardia theta... [more]
A0A7S2PJX5_9STRA4.030e-2342.02Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6U3NZ07_9STRA1.010e-2243.1230S ribosomal protein S15 n=1 Tax=Ditylum brightwe... [more]
A0A7C6I5R5_9FIRM1.790e-2155.2930S ribosomal protein S15 n=1 Tax=Clostridia bacte... [more]
A0A2K9EJ00_9FIRM2.460e-2157.5030S ribosomal protein S15 n=3 Tax=Eubacteriales Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 108..188
e-value: 2.8E-34
score: 129.9
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 111..188
e-value: 1.8E-28
score: 98.6
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 139..169
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 108..185
e-value: 8.53302E-31
score: 105.663
NoneNo IPR availableGENE3D1.10.287.10coord: 103..153
e-value: 1.9E-16
score: 61.8
NoneNo IPR availableGENE3D6.10.250.3130coord: 155..189
e-value: 7.9E-12
score: 46.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..55
NoneNo IPR availablePANTHERPTHR23321:SF2637S RIBOSOMAL PROTEIN S28, MITOCHONDRIALcoord: 105..188
IPR005290Ribosomal protein S15, bacterial-typeTIGRFAMTIGR00952TIGR00952coord: 112..188
e-value: 1.4E-28
score: 97.0
IPR005290Ribosomal protein S15, bacterial-typePANTHERPTHR23321RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLARcoord: 105..188
IPR005290Ribosomal protein S15, bacterial-typeHAMAPMF_01343_BRibosomal_S15_Bcoord: 94..189
score: 18.353979
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 109..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_304_length_31134_cov_4.503817contigNODE_304_length_31134_cov_4.503817:23665..24255 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3106.t1Gcaud3106.t1Gracilaria caudata M_176_S67 malemRNANODE_304_length_31134_cov_4.503817 23665..24255 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3106.t1 ID=Gcaud3106.t1|Name=Gcaud3106.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
MEDSVSNGEAVSRLTSDSGEMIVDPPVSNPTSEVSEVASETVASTEIDNS
SSVVESAAGEASYDASSGEEFFSTQPGLMGVIDDDDDLDVGEIITPEPPG
YWRNRVAIKEAQQTFKLHETDSGSPEFQIATLTKKIEYLTTHLKSNPKDF
SSTRGLLRMVSTRRKLLKYLKKCDSERFNNIVSGLKIRISQKLRNL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000589Ribosomal_S15
IPR005290Ribosomal_S15_bac-type
IPR009068S15_NS1_RNA-bd