Gcaud2567.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2567.t1
Unique NameGcaud2567.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length304
Homology
BLAST of Gcaud2567.t1 vs. uniprot
Match: A0A2V3IXW1_9FLOR (RNA exonuclease 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXW1_9FLOR)

HSP 1 Score: 382 bits (981), Expect = 2.620e-130
Identity = 199/299 (66.56%), Postives = 231/299 (77.26%), Query Frame = 0
Query:    3 DFVQEAVYASLRNDKKLEKTLEDRNGSAVNASGAGIRSKTVKQAAKKRK-RISSNWEQLQKTLPKTALRNTKRKRASKELESKNVESLLDASQVSSFMNRPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLRKGRARTASAAKESVNK 300
            DFV+EAV ASLRNDKKL+  +   +     AS                  RISSNW+QLQK+LPKT LR +KR+R  +  E++  E     SQVSSFM RPVV TNE+TD+V MDCEMVGVGPDGKQNALARVSVVNYSGDVLYD +VKVKERVTDYRT+WSGVK EDV+ DS  AV+ YEAQK VG+LI GRIVVGHAL+ND+KVLRISHPWQD+RDT+ +FK++W+ QGRR+ VGPKLSV+VAEVLGVDTFQKSEHDSCEDARAALALYKRHRK WE SL++G+       +   NK
Sbjct:   15 DFVREAVLASLRNDKKLDAEISSNDAEEKAASXXXXXXXXXXXXXXXXXXRISSNWKQLQKSLPKTVLRGSKRQRKVERSETQEDEVNEAVSQVSSFMKRPVVNTNEITDIVGMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDKFVKVKERVTDYRTQWSGVKAEDVSPDSCTAVEAYEAQKAVGELIAGRIVVGHALRNDIKVLRISHPWQDIRDTAVYFKRVWRKQGRRSAVGPKLSVVVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKEWEASLKQGKGTVQRHGQSKRNK 313          
BLAST of Gcaud2567.t1 vs. uniprot
Match: A0A2R6XP24_MARPO (RNA exonuclease 4 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XP24_MARPO)

HSP 1 Score: 173 bits (439), Expect = 3.750e-49
Identity = 106/236 (44.92%), Postives = 153/236 (64.83%), Query Frame = 0
Query:   53 ISSNWEQLQKTLPKTALRNTKRKRASKELESKNVESLLDASQVSSFMN-RPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLRKGR 287
            +SSNW +LQ  L K  ++  K+ + SKE  +    + +   +    ++ +P      VT V+AMDCEMVGVG +GK++ALARV++VN  G+V+YD +V+ +E VTD+RT+ SGV+P D+     KA D +  QK+V +LI+G+++VGHAL NDLK+L +SHP +D+RDT  + K L    GR       L  + AE LG  + Q+ EHDS EDARAAL LYK+ R+ WE  L++ R
Sbjct:   26 LSSNWLELQAALGKQ-VKYKKKTKPSKETPTAVASAGVSKGEKDEAVSLQPTSSDFSVTKVLAMDCEMVGVGVEGKRSALARVTLVNIYGNVVYDKHVRPQEFVTDFRTQVSGVRPRDLR----KAEDFWTVQKDVAELIKGKVLVGHALHNDLKILLLSHPRKDIRDTQRY-KSLRSDNGRVQA----LKHLAAEHLGA-SIQEREHDSIEDARAALFLYKKFREDWEKGLKQRR 250          
BLAST of Gcaud2567.t1 vs. uniprot
Match: A0A6P4B3V8_ARADU (RNA exonuclease 4 n=3 Tax=Arachis TaxID=3817 RepID=A0A6P4B3V8_ARADU)

HSP 1 Score: 172 bits (437), Expect = 8.360e-49
Identity = 111/243 (45.68%), Postives = 151/243 (62.14%), Query Frame = 0
Query:   53 ISSNWEQLQKTLPKTALRNTKRKRASKE-----------LESKNVESLLDASQVSSFMNRPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLR 284
            ++ NW QLQ+ L      N K  R  KE            ES N ES  D SQ+   +  PV + + +TD VA+DCEMVGVG  G ++AL RV++VN  G+VLYD +V+  ERV D+RTK SG++P D+     KA+D + AQK V +L++GRI+VGHAL+NDLK L +SHP +D+RDTS +   L      ++G    L  + AE+LG +  Q  EH   +DARAA+ LY+R+RK WE SLR
Sbjct:   17 LNPNWVQLQQKLKL----NNKSSRTYKEEDTPKSILGKRKESPNDES--DDSQIDPLI--PVNDDSSLTDAVAIDCEMVGVG-QGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDL----KKAIDFWTAQKRVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFL------KSGCRRALRHLAAEILGAE-IQSGEHCPIQDARAAMLLYQRNRKEWERSLR 239          
BLAST of Gcaud2567.t1 vs. uniprot
Match: A0A443SME7_9ACAR (RNA exonuclease 4 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SME7_9ACAR)

HSP 1 Score: 172 bits (436), Expect = 1.560e-48
Identity = 105/245 (42.86%), Postives = 150/245 (61.22%), Query Frame = 0
Query:   53 ISSNWEQLQKTLPKTALRNTKRKRASKELESKNVESLLDASQV-SSFMNRPVVETNE------------VTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLR 284
            +SSNW+ L   L     R  K K++++  ES+ +   +D   +   F  + +VETN+            +T  V+MDCEMVGVG DG+Q+ LAR S+VN+ G  +YD YVK  E+VT+YRT  SG++P  +        D    QKEV ++I+GRI+VGHA+K+DL+VL + HP +D+RDTS +FK +    G +T   P L  +  ++LGV   Q  EHDS EDAR A+ LY  HRKAWE+S++
Sbjct:   35 VSSNWKNLCSAL-NIKSRPKKAKQSNETNESEKIWFEIDGKTLREDFGKKKIVETNKEEHLVKEKSFTGLTRAVSMDCEMVGVGKDGEQSILARASIVNHFGHCIYDKYVKPTEKVTNYRTSVSGIRPHHL----KDGEDFKTVQKEVFEIIKGRILVGHAIKHDLQVLFLDHPRKDIRDTSRYFKHI---SGGKT---PSLRRLSEQLLGVG-IQSGEHDSVEDARVAMRLYTMHRKAWESSVK 267          
BLAST of Gcaud2567.t1 vs. uniprot
Match: UPI00077BA19D (RNA exonuclease 4 n=1 Tax=Tetranychus urticae TaxID=32264 RepID=UPI00077BA19D)

HSP 1 Score: 170 bits (430), Expect = 2.120e-48
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 0
Query:  109 VTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLR 284
            +T  V MDCEMVGVG  G Q+ LARVS+VN  G  LYD YVK  E VTDYRT  SG++PED+        D  + Q +V D+I+GRI+VGHALKNDLKVL + HP   +RDTS +FKK+ K  G+     P L  + +++LGVD  Q  EHDS +DARAA+ LY  ++K WE+ ++
Sbjct:   42 LTRTVGMDCEMVGVGDKGTQSILARVSLVNQFGHCLYDKYVKPTEPVTDYRTSVSGIRPEDI----ENGEDFKKVQYDVNDIIKGRILVGHALKNDLKVLFLDHPRSRIRDTSVYFKKMLKGGGK-----PSLKRLTSQLLGVD-IQHGEHDSVQDARAAMRLYTMYKKKWESEIK 207          
BLAST of Gcaud2567.t1 vs. uniprot
Match: A0A423SPU9_PENVA (RNA exonuclease 4 n=2 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423SPU9_PENVA)

HSP 1 Score: 173 bits (438), Expect = 5.050e-48
Identity = 98/198 (49.49%), Postives = 133/198 (67.17%), Query Frame = 0
Query:  102 PVVETNE-VTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFF--FKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLRKGRARTASAAKE 296
            PV +TNE +T V+AMDCEMVGVG DGK++ LARVS+VN+SG VLYD YVK  E+VTDYRT+ SG++      D  K  D    QKEV DL++G+++VGHALKNDLKVL +SHP   +RDTS +  F++L+K      G  P L  +  +++GV   Q  EH S +DA+AA+ LY   R+ WE S ++   +  +A K+
Sbjct:  153 PVKKTNEELTQVIAMDCEMVGVGMDGKESILARVSIVNHSGKVLYDKYVKPLEKVTDYRTQISGIRH----CDLEKGEDFKTVQKEVADLLKGKVLVGHALKNDLKVLFLSHPRTRIRDTSKYKGFRRLFK------GSTPSLKNLTEKLIGVK-IQHGEHSSVQDAQAAMRLYTAFRREWENSKKQFNKKKTAAVKD 339          
BLAST of Gcaud2567.t1 vs. uniprot
Match: A9P108_PICSI (RNA exonuclease 4 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P108_PICSI)

HSP 1 Score: 170 bits (430), Expect = 8.280e-48
Identity = 109/247 (44.13%), Postives = 149/247 (60.32%), Query Frame = 0
Query:   53 ISSNWEQLQKTLPKTALRNTKRKRASKELE--------SKNVESLLDASQVSSFMNRPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLRKGRARTA 291
            ++ NW QL+  L     R T  K  +K  +        S N E   D +  +    +PV +   +T  VAMDCEMVGVG DG +NALARV++VN  G+ +YD YV+  E V+D+R+  SGV+    A    KA D +  QK+V +LI+GRI+VGHAL+NDLKVL +SHP +D+RDTS + K L    GR       L  + AE+LGV   Q+ EH S EDARAAL LY++ +K WE S+R+ R + +
Sbjct:   25 LNPNWTQLKAKLNSHTRRRTHFKPEAKITQVRVSGGEYSDNPEVTEDGTSSTLASFKPVNDDCSLTGAVAMDCEMVGVGSDGSRNALARVTLVNAWGNAIYDEYVRPLEAVSDFRSNISGVR----AHHLKKAKDLWSVQKDVSELIKGRILVGHALQNDLKVLFLSHPKKDIRDTSAY-KPLRSKAGRPRA----LRDLSAEILGVK-IQEKEHCSVEDARAALFLYRKFKKEWEKSIREKRKKVS 261          
BLAST of Gcaud2567.t1 vs. uniprot
Match: D8M1R3_BLAHO (RNA exonuclease 4 n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1R3_BLAHO)

HSP 1 Score: 169 bits (429), Expect = 8.560e-48
Identity = 103/248 (41.53%), Postives = 151/248 (60.89%), Query Frame = 0
Query:   43 VKQAAKKRKRISSNWEQLQKTLPKTALRN---TKRKRASKELESKNVESLLDASQVSSFMNRPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFF--FKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLRK 285
             K+A  K+ +I SNWE ++K +    LRN    KR+R  +E   K+V S      + + +N     T   T VVA+DCEMVGVGP+  ++ALAR+S+VNY G +LYD++VK    VTDYRT+WSG++PED  L+  + V   EAQ     L++ RIVVGH++ ND + L + HP + +RDT+++  F + WK +     +  KL  ++    G    Q+ EHDS +DARA L LYK++R  WE  ++K
Sbjct:   12 TKEAHPKKAKIGSNWESMKKLI----LRNPAEAKRRRLREENPEKSV-SPKTLVNLEALLNPDGSGTASDTPVVAIDCEMVGVGPNN-ESALARISIVNYYGAILYDSFVKPPSAVTDYRTQWSGIRPED--LEGDRVVTLREAQDVADRLMKNRIVVGHSISNDFEALMMHHPRRLIRDTAYYRPFMRKWKNKW----LPHKLQYLLKREFGT-AIQEGEHDSIDDARATLLLYKKYRVEWENEIKK 246          
BLAST of Gcaud2567.t1 vs. uniprot
Match: B9GGE5_POPTR (RNA exonuclease 4 n=6 Tax=Saliceae TaxID=238069 RepID=B9GGE5_POPTR)

HSP 1 Score: 170 bits (430), Expect = 9.790e-48
Identity = 118/259 (45.56%), Postives = 157/259 (60.62%), Query Frame = 0
Query:   37 GIRSKTVKQAAKKRKR-ISSNWEQLQKTL-------PKTALRNTKRKRASKELESKNVESLLDASQVSSFMNRPVVETNE---VTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLR 284
            G   +  K   KK+K  I+ NW QLQ+TL       PKT+   T+     K  E  + ES  D SQ++     P++ TN+   VTD +AMDCEMVGVG  G ++AL RV++VN  G+VLYD +V+  ERV D+RT+ SG++P D+     KA D   AQK+V  LI+GRI+VGHAL NDLK L + HP +D+RDTS +   L   +GRR      L  + AE LG    Q  EH   EDARAA+ LY+R++K WE S+R
Sbjct:    2 GSEEQKKKNPKKKQKLPINPNWAQLQQTLQIHGSRRPKTSNTETQDSILGKRKERPDAES--DKSQIN-----PLIPTNDDFSVTDAIAMDCEMVGVG-QGNRSALGRVTLVNQWGNVLYDEFVRPVERVADFRTQISGIRPRDLR----KARDFSTAQKKVAVLIKGRILVGHALSNDLKALLLGHPKKDLRDTSEYQPFL---KGRRRKA---LRHLAAEFLGAK-IQSGEHCPIEDARAAMLLYQRNKKEWEKSIR 241          
BLAST of Gcaud2567.t1 vs. uniprot
Match: A0A1J7GWB5_LUPAN (RNA exonuclease 4 n=2 Tax=Lupinus TaxID=3869 RepID=A0A1J7GWB5_LUPAN)

HSP 1 Score: 168 bits (426), Expect = 4.090e-47
Identity = 110/242 (45.45%), Postives = 149/242 (61.57%), Query Frame = 0
Query:   53 ISSNWEQLQKTL----PKTALRNTKRKR---ASKELESKNVESLLDASQVSSFMNRPVVETNE---VTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVKVKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHALKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLGVDTFQKSEHDSCEDARAALALYKRHRKAWETSLR 284
            ++ NW QLQ+ L    PK   RN K+      SK +  K  +   D S  S     P+  TN+   +TD VAMDCEMVGVG +G ++AL RV+++N  G+V+YD +V+  ERV D+RT  SG++P D+     KA D + AQK+V +LI+GRI+VGHAL NDLK L +SHP +D+RDTS + +   KT  RR      L  +  EVLG    Q  EH   EDARAA+ LY+R+RK WE S++
Sbjct:   15 MNPNWVQLQQKLKLNAPKPYSRNFKKSEEDDTSKSILGKRKDRSDDESDDSEI--NPLAPTNDDSSLTDAVAMDCEMVGVG-EGNKSALGRVTLINKWGNVIYDEFVRPLERVVDFRTFVSGIRPRDLR----KAKDLWSAQKKVAELIKGRILVGHALHNDLKALLLSHPKKDIRDTSEY-QPFQKTGSRRA-----LKHLAEEVLGAK-IQSGEHCPIEDARAAMMLYQRNRKEWEKSVK 242          
The following BLAST results are available for this feature:
BLAST of Gcaud2567.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXW1_9FLOR2.620e-13066.56RNA exonuclease 4 n=1 Tax=Gracilariopsis chorda Ta... [more]
A0A2R6XP24_MARPO3.750e-4944.92RNA exonuclease 4 n=2 Tax=Marchantia polymorpha Ta... [more]
A0A6P4B3V8_ARADU8.360e-4945.68RNA exonuclease 4 n=3 Tax=Arachis TaxID=3817 RepID... [more]
A0A443SME7_9ACAR1.560e-4842.86RNA exonuclease 4 n=1 Tax=Leptotrombidium deliense... [more]
UPI00077BA19D2.120e-4851.70RNA exonuclease 4 n=1 Tax=Tetranychus urticae TaxI... [more]
A0A423SPU9_PENVA5.050e-4849.49RNA exonuclease 4 n=2 Tax=Penaeus vannamei TaxID=6... [more]
A9P108_PICSI8.280e-4844.13RNA exonuclease 4 n=1 Tax=Picea sitchensis TaxID=3... [more]
D8M1R3_BLAHO8.560e-4841.53RNA exonuclease 4 n=1 Tax=Blastocystis hominis Tax... [more]
B9GGE5_POPTR9.790e-4845.56RNA exonuclease 4 n=6 Tax=Saliceae TaxID=238069 Re... [more]
A0A1J7GWB5_LUPAN4.090e-4745.45RNA exonuclease 4 n=2 Tax=Lupinus TaxID=3869 RepID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 111..281
e-value: 2.7E-31
score: 120.0
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 113..272
e-value: 8.2E-12
score: 46.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 108..295
e-value: 9.9E-49
score: 167.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..303
NoneNo IPR availablePANTHERPTHR12801:SF135RNA EXONUCLEASE 4coord: 38..295
NoneNo IPR availablePANTHERPTHR12801RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATEDcoord: 38..295
IPR037431RNA exonuclease 4, DEDDh 3'-5' exonuclease domainCDDcd06144REX4_likecoord: 113..273
e-value: 8.32961E-77
score: 229.325
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 112..276

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_296_length_31928_cov_4.500110contigNODE_296_length_31928_cov_4.500110:25260..26171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2567.t1Gcaud2567.t1Gracilaria caudata M_176_S67 malemRNANODE_296_length_31928_cov_4.500110 25260..26171 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2567.t1 ID=Gcaud2567.t1|Name=Gcaud2567.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
MQDFVQEAVYASLRNDKKLEKTLEDRNGSAVNASGAGIRSKTVKQAAKKR
KRISSNWEQLQKTLPKTALRNTKRKRASKELESKNVESLLDASQVSSFMN
RPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVK
VKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHA
LKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLG
VDTFQKSEHDSCEDARAALALYKRHRKAWETSLRKGRARTASAAKESVNK
GGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR036397RNaseH_sf
IPR037431REX4_DEDDh_dom
IPR012337RNaseH-like_sf