Gcaud2567.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2567.t1
Unique Name	Gcaud2567.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_296_length_31928_cov_4.500110	contig	NODE_296_length_31928_cov_4.500110:25260..26171 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_016653-tr
Preferred name	REXO4
PFAMs	RNase_T
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K18327
GOs	GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Evalue	3.55e-45
EggNOG OGs	COG0847@1\|root,KOG2249@2759\|Eukaryota,3A1XU@33154\|Opisthokonta,3BA56@33208\|Metazoa,3D0EI@33213\|Bilateria
Description	RNA exonuclease 4
COG category	L
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2567	Gcaud2567	Gracilaria caudata M_176_S67 male	gene	NODE_296_length_31928_cov_4.500110 25260..26171 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2567.t1.start1	Gcaud2567.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_296_length_31928_cov_4.500110 25260..25262 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2567.t1.CDS1	Gcaud2567.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_296_length_31928_cov_4.500110 25260..26171 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2567.t1.exon1	Gcaud2567.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_296_length_31928_cov_4.500110 25260..26171 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2567.t1.stop1	Gcaud2567.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_296_length_31928_cov_4.500110 26169..26171 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2567.t1	Gcaud2567.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_296_length_31928_cov_4.500110 25260..26171 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_296_length_31928_cov_4.500110:25260..26171+
coding sequence from alignment at NODE_296_length_31928_cov_4.500110:25260..26171+

mRNA sequence

>Gcaud2567.t1 ID=Gcaud2567.t1|Name=Gcaud2567.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp
MQDFVQEAVYASLRNDKKLEKTLEDRNGSAVNASGAGIRSKTVKQAAKKR
KRISSNWEQLQKTLPKTALRNTKRKRASKELESKNVESLLDASQVSSFMN
RPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVK
VKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHA
LKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLG
VDTFQKSEHDSCEDARAALALYKRHRKAWETSLRKGRARTASAAKESVNK
GGK*

spliced messenger RNA

>Gcaud2567.t1 ID=Gcaud2567.t1|Name=Gcaud2567.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:25260..26171+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGATTTTGTTCAAGAAGCTGTCTATGCCTCTCTTCGAAATGACAA
AAAGCTCGAAAAGACTTTAGAAGACCGGAATGGTTCAGCCGTAAATGCGT
CAGGGGCCGGTATAAGATCTAAAACGGTTAAACAGGCCGCGAAGAAGCGG
AAGCGGATAAGCTCCAATTGGGAGCAGCTACAGAAAACACTACCAAAGAC
TGCGTTGCGAAATACAAAAAGAAAAAGGGCTTCGAAAGAGTTGGAGAGCA
AGAATGTTGAATCGTTGCTAGATGCTTCGCAGGTTAGCTCCTTTATGAAC
AGACCTGTCGTCGAGACAAACGAAGTGACGGATGTGGTTGCTATGGATTG
TGAAATGGTTGGTGTTGGACCCGACGGAAAACAGAATGCCCTGGCTCGTG
TCTCGGTTGTGAATTATTCTGGAGATGTGTTATACGACACATATGTAAAG
GTGAAGGAACGAGTTACTGATTACAGAACTAAATGGTCCGGCGTGAAGCC
AGAAGATGTTGCTCTTGACTCTTCGAAGGCTGTGGATCCGTACGAGGCAC
AGAAAGAAGTCGGGGACTTAATAAGAGGCAGAATTGTAGTAGGTCACGCA
CTGAAGAATGACCTGAAAGTTCTTAGAATATCTCATCCTTGGCAGGATGT
TCGAGATACTTCTTTCTTTTTCAAGAAGCTATGGAAGACTCAAGGTCGCC
GCACGGGTGTCGGTCCTAAGCTGAGCGTTATTGTTGCTGAGGTACTAGGG
GTAGACACTTTCCAAAAGAGCGAACATGATTCATGTGAGGATGCGCGTGC
CGCACTTGCGCTGTACAAACGACACCGAAAGGCCTGGGAGACAAGTTTGA
GGAAAGGAAGGGCTAGAACGGCTTCTGCCGCAAAAGAGTCGGTCAACAAA
GGAGGGAAATAA

protein sequence of Gcaud2567.t1

>Gcaud2567.t1 ID=Gcaud2567.t1|Name=Gcaud2567.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
MQDFVQEAVYASLRNDKKLEKTLEDRNGSAVNASGAGIRSKTVKQAAKKR
KRISSNWEQLQKTLPKTALRNTKRKRASKELESKNVESLLDASQVSSFMN
RPVVETNEVTDVVAMDCEMVGVGPDGKQNALARVSVVNYSGDVLYDTYVK
VKERVTDYRTKWSGVKPEDVALDSSKAVDPYEAQKEVGDLIRGRIVVGHA
LKNDLKVLRISHPWQDVRDTSFFFKKLWKTQGRRTGVGPKLSVIVAEVLG
VDTFQKSEHDSCEDARAALALYKRHRKAWETSLRKGRARTASAAKESVNK
GGK*

mRNA from alignment at NODE_296_length_31928_cov_4.500110:25260..26171+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2567.t1 ID=Gcaud2567.t1|Name=Gcaud2567.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:25260..26171+ (Gracilaria caudata M_176_S67 male)
ATGCAGGATTTTGTTCAAGAAGCTGTCTATGCCTCTCTTCGAAATGACAA
AAAGCTCGAAAAGACTTTAGAAGACCGGAATGGTTCAGCCGTAAATGCGT
CAGGGGCCGGTATAAGATCTAAAACGGTTAAACAGGCCGCGAAGAAGCGG
AAGCGGATAAGCTCCAATTGGGAGCAGCTACAGAAAACACTACCAAAGAC
TGCGTTGCGAAATACAAAAAGAAAAAGGGCTTCGAAAGAGTTGGAGAGCA
AGAATGTTGAATCGTTGCTAGATGCTTCGCAGGTTAGCTCCTTTATGAAC
AGACCTGTCGTCGAGACAAACGAAGTGACGGATGTGGTTGCTATGGATTG
TGAAATGGTTGGTGTTGGACCCGACGGAAAACAGAATGCCCTGGCTCGTG
TCTCGGTTGTGAATTATTCTGGAGATGTGTTATACGACACATATGTAAAG
GTGAAGGAACGAGTTACTGATTACAGAACTAAATGGTCCGGCGTGAAGCC
AGAAGATGTTGCTCTTGACTCTTCGAAGGCTGTGGATCCGTACGAGGCAC
AGAAAGAAGTCGGGGACTTAATAAGAGGCAGAATTGTAGTAGGTCACGCA
CTGAAGAATGACCTGAAAGTTCTTAGAATATCTCATCCTTGGCAGGATGT
TCGAGATACTTCTTTCTTTTTCAAGAAGCTATGGAAGACTCAAGGTCGCC
GCACGGGTGTCGGTCCTAAGCTGAGCGTTATTGTTGCTGAGGTACTAGGG
GTAGACACTTTCCAAAAGAGCGAACATGATTCATGTGAGGATGCGCGTGC
CGCACTTGCGCTGTACAAACGACACCGAAAGGCCTGGGAGACAAGTTTGA
GGAAAGGAAGGGCTAGAACGGCTTCTGCCGCAAAAGAGTCGGTCAACAAA
GGAGGGAAATAA

Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:25260..26171+

>Gcaud2567.t1 ID=Gcaud2567.t1|Name=Gcaud2567.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=912bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:25260..26171+ (Gracilaria caudata M_176_S67 male)
ATGCAGGATTTTGTTCAAGAAGCTGTCTATGCCTCTCTTCGAAATGACAA
AAAGCTCGAAAAGACTTTAGAAGACCGGAATGGTTCAGCCGTAAATGCGT
CAGGGGCCGGTATAAGATCTAAAACGGTTAAACAGGCCGCGAAGAAGCGG
AAGCGGATAAGCTCCAATTGGGAGCAGCTACAGAAAACACTACCAAAGAC
TGCGTTGCGAAATACAAAAAGAAAAAGGGCTTCGAAAGAGTTGGAGAGCA
AGAATGTTGAATCGTTGCTAGATGCTTCGCAGGTTAGCTCCTTTATGAAC
AGACCTGTCGTCGAGACAAACGAAGTGACGGATGTGGTTGCTATGGATTG
TGAAATGGTTGGTGTTGGACCCGACGGAAAACAGAATGCCCTGGCTCGTG
TCTCGGTTGTGAATTATTCTGGAGATGTGTTATACGACACATATGTAAAG
GTGAAGGAACGAGTTACTGATTACAGAACTAAATGGTCCGGCGTGAAGCC
AGAAGATGTTGCTCTTGACTCTTCGAAGGCTGTGGATCCGTACGAGGCAC
AGAAAGAAGTCGGGGACTTAATAAGAGGCAGAATTGTAGTAGGTCACGCA
CTGAAGAATGACCTGAAAGTTCTTAGAATATCTCATCCTTGGCAGGATGT
TCGAGATACTTCTTTCTTTTTCAAGAAGCTATGGAAGACTCAAGGTCGCC
GCACGGGTGTCGGTCCTAAGCTGAGCGTTATTGTTGCTGAGGTACTAGGG
GTAGACACTTTCCAAAAGAGCGAACATGATTCATGTGAGGATGCGCGTGC
CGCACTTGCGCTGTACAAACGACACCGAAAGGCCTGGGAGACAAGTTTGA
GGAAAGGAAGGGCTAGAACGGCTTCTGCCGCAAAAGAGTCGGTCAACAAA
GGAGGGAAATAA