Gcaud2566.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2566.t1
Unique NameGcaud2566.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length155
Homology
BLAST of Gcaud2566.t1 vs. uniprot
Match: A0A2V3IXM7_9FLOR (40S ribosomal protein S18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXM7_9FLOR)

HSP 1 Score: 292 bits (747), Expect = 8.980e-100
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 0
Query:    1 MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKKA 154
            MAV+MEGE+FQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSL+NEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFK+REDLDRLRK R HRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKKA
Sbjct:    1 MAVVMEGEEFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLSNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKLREDLDRLRKTRCHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKKA 154          
BLAST of Gcaud2566.t1 vs. uniprot
Match: R7QA05_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA05_CHOCR)

HSP 1 Score: 290 bits (743), Expect = 4.050e-98
Identity = 146/154 (94.81%), Postives = 153/154 (99.35%), Query Frame = 0
Query:    1 MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKKA 154
            MAV+MEGE+FQHILRVLNTNI+GRQKVMYALTSIKGVGRRFSNLVLKKAD+DL KRAGSL+NEEIDRIVTIIQ+PRQFKIPDYFLNRQRDFKDGKT+QLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKKA
Sbjct:   71 MAVVMEGEEFQHILRVLNTNIEGRQKVMYALTSIKGVGRRFSNLVLKKADVDLAKRAGSLSNEEIDRIVTIIQNPRQFKIPDYFLNRQRDFKDGKTSQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKKA 224          
BLAST of Gcaud2566.t1 vs. uniprot
Match: A0A7S1XJJ9_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XJJ9_9RHOD)

HSP 1 Score: 258 bits (659), Expect = 5.470e-86
Identity = 126/153 (82.35%), Postives = 146/153 (95.42%), Query Frame = 0
Query:    1 MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKK 153
            M+ +M+  +FQHILRVLNTNIDGRQKVM+A+TSIKGVGRRF+NLVLKKAD+DL+KRAG L+NEEIDRIVTIIQ+P+QFKIPD+FLNRQ++FKDGK TQLIAN LDF++REDLDRLRKIR+HRG+RHY GLRVRGQHTKTTGRRG+TVGVSKKK
Sbjct:   26 MSAVMDSGEFQHILRVLNTNIDGRQKVMFAITSIKGVGRRFANLVLKKADVDLSKRAGELSNEEIDRIVTIIQNPQQFKIPDWFLNRQKNFKDGKYTQLIANALDFQLREDLDRLRKIRAHRGIRHYMGLRVRGQHTKTTGRRGKTVGVSKKK 178          
BLAST of Gcaud2566.t1 vs. uniprot
Match: A0A1X6NL25_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NL25_PORUM)

HSP 1 Score: 254 bits (650), Expect = 5.700e-85
Identity = 124/153 (81.05%), Postives = 144/153 (94.12%), Query Frame = 0
Query:    1 MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKK 153
            MAV+M+  +FQHILR+LNTNI+GR K M+ALT+IKGVGRRFSNLVLKKAD+DL+KRAG L++EEIDRIVTIIQ+PRQFKIPD+FLNRQ+DFKDGK +QLIAN LDFK+REDLDR+RKIR HRG+RHY GLRVRGQHTKTTGRRGRTVGVSK++
Sbjct:    1 MAVVMQSAEFQHILRILNTNIEGRHKTMFALTAIKGVGRRFSNLVLKKADVDLSKRAGMLSSEEIDRIVTIIQNPRQFKIPDWFLNRQKDFKDGKYSQLIANNLDFKLREDLDRMRKIRCHRGIRHYAGLRVRGQHTKTTGRRGRTVGVSKRR 153          
BLAST of Gcaud2566.t1 vs. uniprot
Match: M2W5T7_GALSU (40S ribosomal protein S18 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W5T7_GALSU)

HSP 1 Score: 254 bits (649), Expect = 7.830e-85
Identity = 124/153 (81.05%), Postives = 145/153 (94.77%), Query Frame = 0
Query:    1 MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKK 153
            M+V+++  +FQHILR+LNTNIDG++KVMYALTSIKGVGRRFSNLVLKKA++D++KRAG LT EEIDRIVTIIQ+PRQFKIPD+FLNRQ+D +DGK TQLI+N LDFK+REDLDRLRKIR+HRG+RH +GLRVRGQHTKTTGRRGRTVGVSKKK
Sbjct:    1 MSVLLQSSEFQHILRILNTNIDGKRKVMYALTSIKGVGRRFSNLVLKKAEVDVSKRAGDLTAEEIDRIVTIIQNPRQFKIPDWFLNRQKDVRDGKYTQLISNNLDFKLREDLDRLRKIRAHRGLRHMWGLRVRGQHTKTTGRRGRTVGVSKKK 153          
BLAST of Gcaud2566.t1 vs. uniprot
Match: A0A7S2ZCH8_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZCH8_9RHOD)

HSP 1 Score: 244 bits (623), Expect = 7.180e-81
Identity = 119/154 (77.27%), Postives = 142/154 (92.21%), Query Frame = 0
Query:    1 MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKKA 154
            M+VIM   +FQHILRV+NTNIDGR K+M+ALT+IKGVGRR+SNLVLKKAD+DL KRAG L+NEEIDRIV I+Q+P Q+KIP++FLNRQ+DFK+G  +QLI+NQLDFK+REDLDR+RKI+ HRG+RHY+GLRVRGQ TKTTGRRGRTVGVSKKKA
Sbjct:    1 MSVIMNQGEFQHILRVMNTNIDGRHKIMFALTAIKGVGRRYSNLVLKKADVDLNKRAGELSNEEIDRIVQIMQNPSQYKIPNWFLNRQKDFKEGTYSQLISNQLDFKLREDLDRMRKIKCHRGLRHYWGLRVRGQRTKTTGRRGRTVGVSKKKA 154          
BLAST of Gcaud2566.t1 vs. uniprot
Match: T2MEP2_HYDVU (40S ribosomal protein S18 n=2 Tax=Hydroidolina TaxID=37516 RepID=T2MEP2_HYDVU)

HSP 1 Score: 238 bits (608), Expect = 1.430e-78
Identity = 113/146 (77.40%), Postives = 137/146 (93.84%), Query Frame = 0
Query:    8 EDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKK 153
            E FQHILRV+NTNIDG+ K+MYA+TSIKGVGRRFSN+ LKKADIDL KRAG LT+EE++R++TI+Q+PRQ+KIPDYFLNRQ+D KDGK TQ++AN LD K+REDL+RL+KI++HRG+RHY+GLRVRGQHTKTTGR+GRTVGVSKKK
Sbjct:    7 EKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADIDLKKRAGELTDEEVERVITIMQNPRQYKIPDYFLNRQKDIKDGKYTQVLANALDNKLREDLERLKKIKAHRGLRHYWGLRVRGQHTKTTGRKGRTVGVSKKK 152          
BLAST of Gcaud2566.t1 vs. uniprot
Match: E3PQX3_MICSQ (40S ribosomal protein S18 n=3 Tax=Ascidiacea TaxID=7713 RepID=E3PQX3_MICSQ)

HSP 1 Score: 238 bits (607), Expect = 1.840e-78
Identity = 113/153 (73.86%), Postives = 143/153 (93.46%), Query Frame = 0
Query:    1 MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKK 153
            MA+++  E FQHILR+ NTNIDGR+K+MYA+T++KGVGRRFSNL+ KKAD+DLTKRAG LT++EIDR+VTI+Q+PRQ+KIPD+FLNRQ+D KDGK +Q+++NQLD K+RED +R++KIR+HRG+RHY+GLRVRGQHTKTTGRRGRTVGVSKKK
Sbjct:    1 MALVIP-EKFQHILRISNTNIDGRRKIMYAMTAVKGVGRRFSNLICKKADVDLTKRAGELTDDEIDRVVTIMQNPRQYKIPDWFLNRQKDVKDGKFSQVLSNQLDNKLREDTERMKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of Gcaud2566.t1 vs. uniprot
Match: A0A8J5XKX3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKX3_DIALT)

HSP 1 Score: 236 bits (603), Expect = 8.280e-78
Identity = 114/152 (75.00%), Postives = 138/152 (90.79%), Query Frame = 0
Query:    2 AVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKK 153
             +++   DFQHILRVLNTNIDGRQKVM+A+T I+GVGRRF+N+VLKKA++ L KRAG LT EE++RIVTIIQ+PRQFKIPD+FLNR++D KDGK +Q+ AN LD KMREDL+RL+KIR+HRG+RHY+GLRVRGQHTKTTGR+GRTVGVSKKK
Sbjct:    3 TLVVSSADFQHILRVLNTNIDGRQKVMFAMTRIRGVGRRFANVVLKKAEVSLEKRAGELTAEEVERIVTIIQNPRQFKIPDWFLNRKKDNKDGKFSQICANNLDLKMREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRKGRTVGVSKKK 154          
BLAST of Gcaud2566.t1 vs. uniprot
Match: F4PBE5_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium TaxID=100474 RepID=F4PBE5_BATDJ)

HSP 1 Score: 236 bits (603), Expect = 1.160e-77
Identity = 112/151 (74.17%), Postives = 140/151 (92.72%), Query Frame = 0
Query:    3 VIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKADIDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLIANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVSKKK 153
            V+     FQ+I+R+LNTNIDG++K+MYALTSIKG+GRR++NLVLKKADIDL KRAG +TN+E++R+VTI+Q+PRQ+KIPD+FLNRQ+D KDGK TQ+IAN LD K+REDL+RL+KIR+HRG+RHY+G+RVRGQHTKTTGRRGRTVGVSKKK
Sbjct:   14 VVPNSGQFQYIIRLLNTNIDGKRKIMYALTSIKGIGRRYANLVLKKADIDLNKRAGEVTNDELERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYTQVIANALDNKLREDLERLKKIRAHRGLRHYWGVRVRGQHTKTTGRRGRTVGVSKKK 164          
The following BLAST results are available for this feature:
BLAST of Gcaud2566.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXM7_9FLOR8.980e-10096.1040S ribosomal protein S18 n=1 Tax=Gracilariopsis c... [more]
R7QA05_CHOCR4.050e-9894.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1XJJ9_9RHOD5.470e-8682.35Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A1X6NL25_PORUM5.700e-8581.05Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2W5T7_GALSU7.830e-8581.0540S ribosomal protein S18 n=1 Tax=Galdieria sulphu... [more]
A0A7S2ZCH8_9RHOD7.180e-8177.27Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
T2MEP2_HYDVU1.430e-7877.4040S ribosomal protein S18 n=2 Tax=Hydroidolina Tax... [more]
E3PQX3_MICSQ1.840e-7873.8640S ribosomal protein S18 n=3 Tax=Ascidiacea TaxID... [more]
A0A8J5XKX3_DIALT8.280e-7875.00Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
F4PBE5_BATDJ1.160e-7774.17Uncharacterized protein n=2 Tax=Batrachochytrium T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 93..144
e-value: 4.2E-25
score: 89.3
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 15..143
e-value: 5.7E-52
score: 175.5
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 5..154
e-value: 3.4E-39
score: 131.8
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 16..146
score: 33.98941
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 13..153
score: 23.335098
NoneNo IPR availableGENE3D1.10.8.50coord: 1..81
e-value: 5.7E-35
score: 121.4
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 4..153
NoneNo IPR availablePANTHERPTHR10871:SF340S RIBOSOMAL PROTEIN S18-RELATEDcoord: 4..153
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 122..135
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 14..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_296_length_31928_cov_4.500110contigNODE_296_length_31928_cov_4.500110:24307..24771 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2566.t1Gcaud2566.t1Gracilaria caudata M_176_S67 malemRNANODE_296_length_31928_cov_4.500110 24307..24771 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2566.t1 ID=Gcaud2566.t1|Name=Gcaud2566.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=155bp
MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKAD
IDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLI
ANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVS
KKKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR02743730s_Rbsml_prot_S13_C
IPR001892Ribosomal_S13
IPR018269Ribosomal_S13_CS
IPR010979Ribosomal_S13-like_H2TH