Gcaud2566.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2566.t1
Unique Name	Gcaud2566.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	155

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_296_length_31928_cov_4.500110	contig	NODE_296_length_31928_cov_4.500110:24307..24771 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707661.1
Preferred name	RPS18
PFAMs	Ribosomal_S13
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02964
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022613,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue	6.78e-86
EggNOG OGs	COG0099@1\|root,KOG3311@2759\|Eukaryota
Description	rRNA binding
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2566	Gcaud2566	Gracilaria caudata M_176_S67 male	gene	NODE_296_length_31928_cov_4.500110 24307..24771 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2566.t1.stop1	Gcaud2566.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_296_length_31928_cov_4.500110 24307..24309 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2566.t1.CDS1	Gcaud2566.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_296_length_31928_cov_4.500110 24307..24771 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2566.t1.exon1	Gcaud2566.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_296_length_31928_cov_4.500110 24307..24771 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2566.t1.start1	Gcaud2566.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_296_length_31928_cov_4.500110 24769..24771 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2566.t1	Gcaud2566.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_296_length_31928_cov_4.500110 24307..24771 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_296_length_31928_cov_4.500110:24307..24771-
coding sequence from alignment at NODE_296_length_31928_cov_4.500110:24307..24771-

mRNA sequence

>Gcaud2566.t1 ID=Gcaud2566.t1|Name=Gcaud2566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=155bp
MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKAD
IDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLI
ANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVS
KKKA*

spliced messenger RNA

>Gcaud2566.t1 ID=Gcaud2566.t1|Name=Gcaud2566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:24307..24771- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTTATCATGGAAGGCGAGGACTTTCAGCACATCCTTCGTGTGCT
GAATACAAACATCGATGGCCGCCAAAAGGTTATGTACGCCCTCACTTCGA
TCAAGGGTGTCGGTCGCCGCTTTTCCAACCTCGTACTCAAGAAGGCAGAT
ATAGATCTCACAAAACGCGCTGGTTCTCTCACCAACGAAGAAATCGACCG
CATCGTCACTATCATTCAAAGTCCGCGCCAGTTCAAGATCCCGGACTATT
TTCTGAACAGGCAACGCGACTTCAAGGACGGAAAGACCACACAACTTATC
GCAAATCAGCTGGATTTTAAGATGAGAGAAGATCTCGATCGCCTGAGAAA
GATTCGTTCTCATCGTGGTATGCGACACTACTTCGGTCTTCGCGTCCGTG
GTCAGCATACGAAGACCACTGGCCGCCGCGGACGCACAGTGGGTGTATCC
AAGAAGAAGGCATAA

protein sequence of Gcaud2566.t1

>Gcaud2566.t1 ID=Gcaud2566.t1|Name=Gcaud2566.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=155bp
MAVIMEGEDFQHILRVLNTNIDGRQKVMYALTSIKGVGRRFSNLVLKKAD
IDLTKRAGSLTNEEIDRIVTIIQSPRQFKIPDYFLNRQRDFKDGKTTQLI
ANQLDFKMREDLDRLRKIRSHRGMRHYFGLRVRGQHTKTTGRRGRTVGVS
KKKA*

mRNA from alignment at NODE_296_length_31928_cov_4.500110:24307..24771-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2566.t1 ID=Gcaud2566.t1|Name=Gcaud2566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:24307..24771- (Gracilaria caudata M_176_S67 male)
ATGGCAGTTATCATGGAAGGCGAGGACTTTCAGCACATCCTTCGTGTGCT
GAATACAAACATCGATGGCCGCCAAAAGGTTATGTACGCCCTCACTTCGA
TCAAGGGTGTCGGTCGCCGCTTTTCCAACCTCGTACTCAAGAAGGCAGAT
ATAGATCTCACAAAACGCGCTGGTTCTCTCACCAACGAAGAAATCGACCG
CATCGTCACTATCATTCAAAGTCCGCGCCAGTTCAAGATCCCGGACTATT
TTCTGAACAGGCAACGCGACTTCAAGGACGGAAAGACCACACAACTTATC
GCAAATCAGCTGGATTTTAAGATGAGAGAAGATCTCGATCGCCTGAGAAA
GATTCGTTCTCATCGTGGTATGCGACACTACTTCGGTCTTCGCGTCCGTG
GTCAGCATACGAAGACCACTGGCCGCCGCGGACGCACAGTGGGTGTATCC
AAGAAGAAGGCATAA

Coding sequence (CDS) from alignment at NODE_296_length_31928_cov_4.500110:24307..24771-

>Gcaud2566.t1 ID=Gcaud2566.t1|Name=Gcaud2566.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=465bp|location=Sequence derived from alignment at NODE_296_length_31928_cov_4.500110:24307..24771- (Gracilaria caudata M_176_S67 male)
ATGGCAGTTATCATGGAAGGCGAGGACTTTCAGCACATCCTTCGTGTGCT
GAATACAAACATCGATGGCCGCCAAAAGGTTATGTACGCCCTCACTTCGA
TCAAGGGTGTCGGTCGCCGCTTTTCCAACCTCGTACTCAAGAAGGCAGAT
ATAGATCTCACAAAACGCGCTGGTTCTCTCACCAACGAAGAAATCGACCG
CATCGTCACTATCATTCAAAGTCCGCGCCAGTTCAAGATCCCGGACTATT
TTCTGAACAGGCAACGCGACTTCAAGGACGGAAAGACCACACAACTTATC
GCAAATCAGCTGGATTTTAAGATGAGAGAAGATCTCGATCGCCTGAGAAA
GATTCGTTCTCATCGTGGTATGCGACACTACTTCGGTCTTCGCGTCCGTG
GTCAGCATACGAAGACCACTGGCCGCCGCGGACGCACAGTGGGTGTATCC
AAGAAGAAGGCATAA