Gcaud2525.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2525.t1
Unique NameGcaud2525.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length623
Homology
BLAST of Gcaud2525.t1 vs. uniprot
Match: A0A2V3J3K1_9FLOR (Histone H2A deubiquitinase MYSM1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3K1_9FLOR)

HSP 1 Score: 475 bits (1223), Expect = 2.000e-161
Identity = 249/357 (69.75%), Postives = 292/357 (81.79%), Query Frame = 0
Query:    8 ELIDLTETPLISEA----PAARPLRRSTRARRQTEPFTVEVDQRTAAKLTPKEQRLEQLPYCTAEQLGIDPLSVPYIRVHPVALALITFHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKDDPFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCYSRLAQHLHPLTPQ---AITFPLDAFMGECYDLISEYSAFGRRVRLEKEWRHQVLGFVKLKRALYEIVQSQQLSEQEQLYRSAVDSLVLAVERAWNDSAEQELERRRQNAAKKRKKRSR 357
            E IDLTE+ +  +A    P+  PLRRSTRARRQTEPFT+EV Q+  +K    +QRLEQ+PY TAEQLG++   VP++RVHPVALA+ITFHAHLTKTEIIGYL GF T V  + EILIAEAFPA+QVKPSDLAKTGRSAF+EVEALPESTIEIA+R  AKGMRVVGWYHSHPDETFTTEPSRVDIENQ+NYQ  VYKD+PFVAAIIAPYNE LPDHRPD++FFRV A+E  L++ YEVCY+ L Q+L   T      I+FPLD+FMGECYDLI+EYS+FGRRVRL+K WR  VLG  KLKRAL ++V      EQ  LYRSAVD++V AV++AW +SA +ELERRR+NAA+KR+KR R
Sbjct:    7 ECIDLTESGITEDANYSSPSNVPLRRSTRARRQTEPFTIEVSQQRESKQAQSQQRLEQVPYQTAEQLGLEASVVPFVRVHPVALAMITFHAHLTKTEIIGYLAGFETEVDNKKEILIAEAFPAKQVKPSDLAKTGRSAFTEVEALPESTIEIAARVSAKGMRVVGWYHSHPDETFTTEPSRVDIENQRNYQHLVYKDEPFVAAIIAPYNEDLPDHRPDVEFFRVWAEECALKLSYEVCYNGLVQYLRATTVGNGGEISFPLDSFMGECYDLITEYSSFGRRVRLDKNWRADVLGVDKLKRALCDLVAEFD-CEQVALYRSAVDAIVEAVDKAWKESAFRELERRRENAARKRRKRRR 362          
BLAST of Gcaud2525.t1 vs. uniprot
Match: A0A2V3J0T1_9FLOR (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0T1_9FLOR)

HSP 1 Score: 348 bits (893), Expect = 5.510e-114
Identity = 169/212 (79.72%), Postives = 194/212 (91.51%), Query Frame = 0
Query:  411 MGAKCVYDISTEGTSPAMVQREIIRRIEAHTGRKSGTWQVSVSIHTTPDKKRPSLELVTLPDVTNRVYIISPPLVTEAEPTLTALLRRISPYVPKVNRSARGLEYDFVDFCVRVGMSFDRHGGAAGVVVEIEYRPCSYSADCEALIAELMERIAAPLVPPPQASSDPGISAAATTAYSYNRIEIDAKKFNEKDLMPFSQRTEALLFAKLLRS 622
            MGAKCVYDISTEG SPAMV+REIIRRIEAHTGR+  +WQV+VS HT PDKKRP++E+V+LPD+ +RV++ISPPLVTEA+PTL  LLRRIS Y PK NRSARGL++DFVDF VRVGMSFDRHGGA GVVV+IEYRPCSY+ADCE LIAELMERIAAPLVPPPQA+ DPGISAAATT+Y+Y R+++DA KFN+KDLMPFS RTEALLFAKLLR+
Sbjct:    1 MGAKCVYDISTEGKSPAMVEREIIRRIEAHTGRRLTSWQVTVSFHTNPDKKRPTIEIVSLPDIKDRVFLISPPLVTEAQPTLVPLLRRISNYSPKYNRSARGLQFDFVDFLVRVGMSFDRHGGATGVVVQIEYRPCSYTADCERLIAELMERIAAPLVPPPQANHDPGISAAATTSYNYTRVDVDATKFNDKDLMPFSHRTEALLFAKLLRA 212          
BLAST of Gcaud2525.t1 vs. uniprot
Match: A0A7S3A9S3_9RHOD (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9S3_9RHOD)

HSP 1 Score: 143 bits (361), Expect = 1.040e-35
Identity = 84/211 (39.81%), Postives = 120/211 (56.87%), Query Frame = 0
Query:  411 MGAKCVYDIS-TEGTSPAMVQREIIRRIEAHTGRKSGTWQVSVSIHTTPDKKRPSLELVTLPDVTNRVYIISPPLVTEAEPTLTALLRRISPYVPKVNRSARGLEYDFVDFCVRVGMSFDRHGGAAGVVVEIEYRPCSYSADCEALIAELMERIAAPLVPPPQASSDPGISAAATTAYSYNRIEIDAKKFNEKDLMPFSQRTEALLFAKLL 620
            MGAKC++ I   E  + A V +E+ RR+EAHTGR+ G WQVS   + +    RP + + T  +   + Y ++     E +  L+ALL +I    P  +   +G+EYD VDF VRVGM F++ G  + VV EI Y PCS   +C  LI ELM++IAAPLV P  +  D   +AAA T Y +  +  D +K       PFS R  A+L++ +L
Sbjct:    1 MGAKCLFRIQINEYYNSAQVHKELQRRVEAHTGRRVGPWQVSAQQYGSKGNVRPPVVVFTTSEEPEKRYFLTGKHAIETDDGLSALLSKIPALTPTQSFMVKGIEYDLVDFTVRVGMVFEKSGPTSNVV-EIGYLPCSIVDNCVGLITELMDKIAAPLVAPQDSRQDSQANAAAETNYEFRLVPDDFQKVEGLANTPFSMRHTAMLYSAML 210          
BLAST of Gcaud2525.t1 vs. uniprot
Match: M1V9P6_CYAM1 (Myb-like, SWIRM and MPN domain-containing protein 1 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V9P6_CYAM1)

HSP 1 Score: 111 bits (278), Expect = 5.010e-22
Identity = 69/167 (41.32%), Postives = 94/167 (56.29%), Query Frame = 0
Query:   70 LGIDPLSVPY-IRVHPVALALITFHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKDD---PFVAAIIAPYNEQLPDHRPDIQFFRVSADEA 232
            L  +P + P+ I V P AL ++  HAHL   E+IG+LGG   +   R ++ I +AF  R       A  GR+   +VE  PES +E  +  E  G+ VV WYHSHP  TF  EPS  D++NQ+NYQ+    +    PF+AAII+PY+  LP  R  IQ+F V    A
Sbjct:  377 LSYEPDAQPFRIVVQPRALFMMDLHAHLDLREVIGFLGG--RYDTTRKQLEIIDAFACR-------AAQGRAGHLDVELDPESAVEARNTIEVSGLAVVAWYHSHP--TFPPEPSVRDLDNQRNYQKQFESEGAPYPFLAAIISPYDPNLPSVRSAIQWFHVGLSPA 532          
BLAST of Gcaud2525.t1 vs. uniprot
Match: A0A7S0IDA4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IDA4_MICPS)

HSP 1 Score: 106 bits (264), Expect = 9.270e-22
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 0
Query:   89 LITFHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKDD----PFVAAIIAPYNEQLPDHRPDIQFFRVS 228
            L+ FH+H+ + EIIG+LGG  T       + +  A PAR++    L   G +A  EVE  PES  +I    +  G+RVVGWYHSHP   F T PS  D+ENQ NYQ+ +++DD    PFV AI+ PY  + PD   D+++F V+
Sbjct:  130 LMDFHSHICRHEIIGFLGG--TWDPRTKSLAVKRALPARRLV---LGAPGENANVEVELDPESVPDIVEALDRDGLRVVGWYHSHP--VFDTHPSLRDVENQANYQR-LFRDDEGGVPFVGAIVGPYATRNPDLSSDVRWFHVA 265          
BLAST of Gcaud2525.t1 vs. uniprot
Match: A0A367K1D4_RHIST (Myb-like, SWIRM and MPN domain-containing protein 1 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367K1D4_RHIST)

HSP 1 Score: 108 bits (271), Expect = 2.140e-21
Identity = 69/178 (38.76%), Postives = 96/178 (53.93%), Query Frame = 0
Query:   70 LGIDPLSVPYIRVHPVALALITFHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQ-----QHVYKDDPFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCY 242
            LG  P     + V    L  + FHAHL  TEIIG+L G         ++++ EA+P R ++      TG++  + VE  P S IE     E + M+VVGWYHSHP  TF  +PS VDIENQ+NYQ     +HV+  +PFV AI+ PY+  LP     I +F V+   +   +P  + Y
Sbjct:  319 LGSQPFE---LAVESNVLLAMDFHAHLMTTEIIGFLAGDWDKDTK--QLVVKEAYPCRSIE------TGQNDVN-VEMDPTSAIETRQLIEERNMKVVGWYHSHP--TFIPDPSLVDIENQRNYQILCREEHVHSLEPFVGAIVGPYDPALPGSASVINWFHVNNAHSDRPIPKRLVY 482          
BLAST of Gcaud2525.t1 vs. uniprot
Match: A0A2G4SG84_RHIZD (Myb-like, SWIRM and MPN domain-containing protein 1 n=3 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A2G4SG84_RHIZD)

HSP 1 Score: 108 bits (270), Expect = 2.610e-21
Identity = 68/168 (40.48%), Postives = 90/168 (53.57%), Query Frame = 0
Query:   79 YIRVHPVALALITFHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQ----QHVYKDDPFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCY 242
            +I V    L  + FHAHL  TEIIG+L G       R  I++ EA+P R ++      TGR+  + VE  P S IE     E + ++VVGWYHSHP  TF  +PS VDIENQ+NYQ          +PFV AI+ PY+  LP     I +F VS   +   +P  + Y
Sbjct:  268 HITVQSNVLLAMDFHAHLMTTEIIGFLAGDWDKETMR--IIVREAYPCRSIE------TGRNDVN-VEMDPTSAIETRQLIEERNLKVVGWYHSHP--TFVPDPSLVDIENQRNYQVLCRDEQASSEPFVGAIVGPYDPNLPGSASVINWFHVSNTNSERPIPKRLIY 424          
BLAST of Gcaud2525.t1 vs. uniprot
Match: I1CSN6_RHIO9 (MPN domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CSN6_RHIO9)

HSP 1 Score: 108 bits (270), Expect = 3.140e-21
Identity = 71/205 (34.63%), Postives = 101/205 (49.27%), Query Frame = 0
Query:   92 FHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQ----QHVYKDDPFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCYSRLAQHLHPLTPQAITFPLDAFMGECYDLISEYSAFGRRVRLEKEWRHQV 292
            FHAHL  TEIIG+L G       R  I++ EA+P R ++      TGR+  + VE  P S IE     E + ++VVGWYHSHP  TF  +PS VDIENQ+NYQ          +PFV AI+ PY+  LP     I +F V +  +   +P  + Y  L +  H    ++            + L+  Y     +  L ++WR  +
Sbjct:  309 FHAHLMTTEIIGFLAGDWDKETMR--IVVREAYPCRSIE------TGRNDVN-VEMDPTSAIETRQMIEERNLKVVGWYHSHP--TFIPDPSLVDIENQRNYQILCRDEENSTEPFVGAIVGPYDPNLPGSASVINWFHVDSSNSERPIPKRLIYD-LQEDEHISNEES---------DRLFKLLEMYKDSPEKSMLNEQWRQDI 492          
BLAST of Gcaud2525.t1 vs. uniprot
Match: C1EDW4_MICCC (MPN domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EDW4_MICCC)

HSP 1 Score: 105 bits (261), Expect = 5.080e-21
Identity = 65/152 (42.76%), Postives = 88/152 (57.89%), Query Frame = 0
Query:   84 PVALALITFHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKDD-------PFVAAIIAPYNEQLPDHRPDIQFFRVS 228
            P A  L+ FH+HL + EIIG+LGG       +C + +  A PAR++    L   G +A  EVE  PES  +I    +  G+RVVGWYHSHP   F+T PS  DIENQ NYQ+ +++DD       PFV AI+ PY     D   D+++F V+
Sbjct:  189 PEASFLMDFHSHLCRHEIIGFLGG-TWDPRTKC-LTVKRALPARRLV---LGAPGENANVEVELDPESVPDIVEALDRDGLRVVGWYHSHP--VFSTHPSLRDIENQSNYQR-LFRDDEAKGGGTPFVGAIVGPYATTNKDLSSDVRWFHVA 332          
BLAST of Gcaud2525.t1 vs. uniprot
Match: A0A1Y2GTF5_9FUNG (Myb-like, SWIRM and MPN domain-containing protein 1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GTF5_9FUNG)

HSP 1 Score: 108 bits (271), Expect = 5.460e-21
Identity = 78/232 (33.62%), Postives = 107/232 (46.12%), Query Frame = 0
Query:   63 PYCTAEQLGIDPLSVPYIRVHPVALALITFHAHLTKTEIIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPESTIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKDD-----PFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCYSRLAQHLHPLTPQAITFPLDAFMGECYDLISEYSAFGRRVRLEKEWR 289
            P+C     G+       I+V    L  + FHAHL  TEIIG+L G          I I   FP R ++      TG++  + VE  P S  E+    E + MR+VGWYHSHP  TFT +PS VDIENQ +YQ  ++KD+     PFV AI+ PY+E+LP     I +F +S        P  + Y  +     P     +   L            EY     R   +++WR
Sbjct:  433 PFCGQPNSGVQGCQPFAIKVQSNVLLGMDFHAHLMTTEIIGFLAGDWDRETRT--IHIKAIFPCRSLQ------TGQNHVN-VEMDPTSEFEVRQEIEKRNMRIVGWYHSHP--TFTPDPSLVDIENQTSYQS-LFKDESMNEEPFVGAIVGPYDERLPGLSSVINWFYISQSAQERGHPKRLLYDLIEDTELPAEEADLWIKL----------FDEYRDSPERTNFKEQWR 642          
The following BLAST results are available for this feature:
BLAST of Gcaud2525.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3K1_9FLOR2.000e-16169.75Histone H2A deubiquitinase MYSM1 n=1 Tax=Gracilari... [more]
A0A2V3J0T1_9FLOR5.510e-11479.72Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3A9S3_9RHOD1.040e-3539.81Mediator of RNA polymerase II transcription subuni... [more]
M1V9P6_CYAM15.010e-2241.32Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A7S0IDA4_MICPS9.270e-2243.06Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A367K1D4_RHIST2.140e-2138.76Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A2G4SG84_RHIZD2.610e-2140.48Myb-like, SWIRM and MPN domain-containing protein ... [more]
I1CSN6_RHIO93.140e-2134.63MPN domain-containing protein n=1 Tax=Rhizopus del... [more]
C1EDW4_MICCC5.080e-2142.76MPN domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A1Y2GTF5_9FUNG5.460e-2133.62Myb-like, SWIRM and MPN domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 334..358
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 75..240
e-value: 9.1E-29
score: 102.0
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 80..249
NoneNo IPR availableSUPERFAMILY102712JAB1/MPN domaincoord: 81..228
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 431..565
e-value: 2.3E-9
score: 37.0
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 79..195
e-value: 4.9E-12
score: 45.9
IPR033497Histone H2A deubiquitinase MYSM1PANTHERPTHR12802:SF126HISTONE H2A DEUBIQUITINASE MYSM1coord: 80..249
IPR037518MPN domainPROSITEPS50249MPNcoord: 80..222
score: 12.279486

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:3361..5686 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2525.t1Gcaud2525.t1Gracilaria caudata M_176_S67 malemRNANODE_290_length_32094_cov_4.541512 3361..5686 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2525.t1 ID=Gcaud2525.t1|Name=Gcaud2525.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=623bp
MSRQQRTELIDLTETPLISEAPAARPLRRSTRARRQTEPFTVEVDQRTAA
KLTPKEQRLEQLPYCTAEQLGIDPLSVPYIRVHPVALALITFHAHLTKTE
IIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPE
STIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKD
DPFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCYSRLAQHLH
PLTPQAITFPLDAFMGECYDLISEYSAFGRRVRLEKEWRHQVLGFVKLKR
ALYEIVQSQQLSEQEQLYRSAVDSLVLAVERAWNDSAEQELERRRQNAAK
KRKKRSRRCFALLTMIRNRSDQIQFLPFSSAPSFAEGSVLPSYKAHASVI
PSVPRPVDGIMGAKCVYDISTEGTSPAMVQREIIRRIEAHTGRKSGTWQV
SVSIHTTPDKKRPSLELVTLPDVTNRVYIISPPLVTEAEPTLTALLRRIS
PYVPKVNRSARGLEYDFVDFCVRVGMSFDRHGGAAGVVVEIEYRPCSYSA
DCEALIAELMERIAAPLVPPPQASSDPGISAAATTAYSYNRIEIDAKKFN
EKDLMPFSQRTEALLFAKLLRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20
IPR000555JAMM/MPN+_dom
IPR033497MYSM1
IPR037518MPN