Gcaud2525.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2525.t1
Unique Name	Gcaud2525.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_290_length_32094_cov_4.541512	contig	NODE_290_length_32094_cov_4.541512:3361..5686 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMO347CT
PFAMs	JAB,Myb_DNA-binding,PWWP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11865,ko:K12133
KEGG Pathway	ko04712,map04712
Evalue	8.24e-22
EggNOG OGs	COG1310@1\|root,KOG0724@1\|root,KOG0724@2759\|Eukaryota,KOG1555@2759\|Eukaryota
Description	metallopeptidase activity
COG category	ADK
BRITE	ko00000,ko00001,ko01002,ko03000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2525	Gcaud2525	Gracilaria caudata M_176_S67 male	gene	NODE_290_length_32094_cov_4.541512 3361..5686 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2525.t1	Gcaud2525.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_290_length_32094_cov_4.541512 3361..5686 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2525.t1.stop1	Gcaud2525.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_290_length_32094_cov_4.541512 3361..3363 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2525.t1.CDS1	Gcaud2525.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 3361..3985 -
Gcaud2525.t1.CDS2	Gcaud2525.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 4056..4116 -
Gcaud2525.t1.CDS3	Gcaud2525.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 4302..4374 -
Gcaud2525.t1.CDS4	Gcaud2525.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 4468..4501 -
Gcaud2525.t1.CDS5	Gcaud2525.t1.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_290_length_32094_cov_4.541512 4611..5686 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2525.t1.exon1	Gcaud2525.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 3361..3985 -
Gcaud2525.t1.exon2	Gcaud2525.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 4056..4116 -
Gcaud2525.t1.exon3	Gcaud2525.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 4302..4374 -
Gcaud2525.t1.exon4	Gcaud2525.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 4468..4501 -
Gcaud2525.t1.exon5	Gcaud2525.t1.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_290_length_32094_cov_4.541512 4611..5686 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2525.t1.intron1	Gcaud2525.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_290_length_32094_cov_4.541512 3986..4055 -
Gcaud2525.t1.intron2	Gcaud2525.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_290_length_32094_cov_4.541512 4117..4301 -
Gcaud2525.t1.intron3	Gcaud2525.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_290_length_32094_cov_4.541512 4375..4467 -
Gcaud2525.t1.intron4	Gcaud2525.t1.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_290_length_32094_cov_4.541512 4502..4610 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2525.t1.start1	Gcaud2525.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_290_length_32094_cov_4.541512 5684..5686 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_290_length_32094_cov_4.541512:3361..5686-
coding sequence from alignment at NODE_290_length_32094_cov_4.541512:3361..5686-

mRNA sequence

>Gcaud2525.t1 ID=Gcaud2525.t1|Name=Gcaud2525.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=623bp
MSRQQRTELIDLTETPLISEAPAARPLRRSTRARRQTEPFTVEVDQRTAA
KLTPKEQRLEQLPYCTAEQLGIDPLSVPYIRVHPVALALITFHAHLTKTE
IIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPE
STIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKD
DPFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCYSRLAQHLH
PLTPQAITFPLDAFMGECYDLISEYSAFGRRVRLEKEWRHQVLGFVKLKR
ALYEIVQSQQLSEQEQLYRSAVDSLVLAVERAWNDSAEQELERRRQNAAK
KRKKRSRRCFALLTMIRNRSDQIQFLPFSSAPSFAEGSVLPSYKAHASVI
PSVPRPVDGIMGAKCVYDISTEGTSPAMVQREIIRRIEAHTGRKSGTWQV
SVSIHTTPDKKRPSLELVTLPDVTNRVYIISPPLVTEAEPTLTALLRRIS
PYVPKVNRSARGLEYDFVDFCVRVGMSFDRHGGAAGVVVEIEYRPCSYSA
DCEALIAELMERIAAPLVPPPQASSDPGISAAATTAYSYNRIEIDAKKFN
EKDLMPFSQRTEALLFAKLLRS*

spliced messenger RNA

>Gcaud2525.t1 ID=Gcaud2525.t1|Name=Gcaud2525.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:3361..5686- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGTCAACAACGTACAGAGCTAATCGATCTCACCGAAACACCGTT
GATATCCGAAGCGCCGGCGGCGCGTCCGTTGCGTCGCTCCACGCGCGCGC
GTCGACAGACGGAGCCGTTTACCGTGGAGGTGGACCAGCGCACGGCCGCA
AAGCTCACCCCGAAGGAGCAGCGTTTGGAGCAGTTGCCGTATTGTACCGC
CGAGCAGCTCGGCATTGACCCGCTGTCCGTGCCGTACATCCGCGTGCATC
CGGTCGCGCTCGCCTTGATCACATTTCACGCGCATCTCACCAAGACCGAG
ATCATCGGCTATTTGGGCGGCTTTGTTACGCACGTCGGTGCCAGATGCGA
GATTCTCATAGCCGAGGCGTTTCCGGCGCGACAGGTCAAGCCTAGCGACT
TGGCGAAGACGGGGCGCTCTGCTTTCAGTGAGGTGGAGGCTCTGCCGGAG
AGCACCATCGAGATCGCCAGTCGCGCCGAGGCCAAGGGCATGCGAGTGGT
GGGATGGTATCATAGCCACCCCGACGAGACCTTTACAACCGAACCGTCGC
GCGTCGACATTGAGAATCAGCAGAATTACCAGCAGCATGTGTACAAGGAT
GATCCTTTTGTAGCAGCCATCATTGCGCCATACAACGAACAACTTCCGGA
TCACCGTCCGGACATCCAGTTTTTCCGCGTGTCGGCGGACGAAGCGCCTT
TGCAGATGCCGTACGAGGTCTGTTACTCGCGCCTTGCCCAACACCTGCAC
CCGTTGACACCCCAGGCGATCACTTTTCCGTTGGATGCTTTCATGGGCGA
ATGCTATGACCTCATTTCAGAGTACTCTGCGTTTGGACGTCGGGTACGAC
TGGAAAAGGAATGGCGACATCAAGTGTTGGGTTTTGTGAAACTCAAACGC
GCCCTTTACGAAATTGTGCAATCCCAACAACTTTCGGAACAGGAGCAGTT
GTATCGTTCGGCGGTTGATTCGCTTGTTTTGGCTGTCGAACGCGCTTGGA
ACGATAGCGCGGAACAAGAACTGGAGAGACGTAGACAGAACGCGGCCAAG
AAACGCAAAAAGCGTAGCCGACGATGTTTTGCGCTGTTGACCATGATACG
AAACCGCTCTGATCAAATTCAATTTTTGCCATTTTCATCAGCGCCCTCCT
TCGCAGAAGGTAGCGTTCTACCGTCGTACAAAGCGCATGCGTCCGTCATT
CCGAGTGTTCCTCGCCCCGTCGACGGAATCATGGGTGCCAAGTGCGTTTA
CGACATTTCAACAGAGGGCACCTCGCCGGCAATGGTGCAGCGAGAAATCA
TCCGTCGCATCGAAGCACACACCGGTCGCAAGTCTGGAACATGGCAGGTC
AGTGTGTCCATCCACACCACGCCAGACAAGAAGCGACCGTCATTAGAGCT
CGTCACGCTTCCAGATGTGACCAATCGCGTGTATATCATCTCGCCCCCGC
TCGTAACAGAGGCTGAACCCACTCTCACCGCGCTTCTGCGTCGCATCTCG
CCATACGTGCCTAAGGTGAATCGCTCAGCGCGTGGGTTGGAGTACGATTT
CGTGGACTTTTGCGTGCGAGTGGGAATGTCATTTGATCGGCATGGCGGCG
CCGCTGGCGTGGTGGTTGAAATTGAATATCGTCCTTGTTCTTATAGTGCC
GACTGTGAGGCGCTTATTGCGGAGCTTATGGAACGCATTGCGGCACCGCT
TGTGCCTCCTCCGCAGGCGAGCAGTGATCCTGGCATCAGTGCGGCTGCCA
CCACTGCTTATAGCTACAACAGAATTGAGATCGATGCCAAGAAATTCAAT
GAGAAGGATTTGATGCCGTTTTCACAACGAACGGAGGCTCTTCTGTTTGC
AAAGCTGCTCAGATCATAA

protein sequence of Gcaud2525.t1

>Gcaud2525.t1 ID=Gcaud2525.t1|Name=Gcaud2525.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=623bp
MSRQQRTELIDLTETPLISEAPAARPLRRSTRARRQTEPFTVEVDQRTAA
KLTPKEQRLEQLPYCTAEQLGIDPLSVPYIRVHPVALALITFHAHLTKTE
IIGYLGGFVTHVGARCEILIAEAFPARQVKPSDLAKTGRSAFSEVEALPE
STIEIASRAEAKGMRVVGWYHSHPDETFTTEPSRVDIENQQNYQQHVYKD
DPFVAAIIAPYNEQLPDHRPDIQFFRVSADEAPLQMPYEVCYSRLAQHLH
PLTPQAITFPLDAFMGECYDLISEYSAFGRRVRLEKEWRHQVLGFVKLKR
ALYEIVQSQQLSEQEQLYRSAVDSLVLAVERAWNDSAEQELERRRQNAAK
KRKKRSRRCFALLTMIRNRSDQIQFLPFSSAPSFAEGSVLPSYKAHASVI
PSVPRPVDGIMGAKCVYDISTEGTSPAMVQREIIRRIEAHTGRKSGTWQV
SVSIHTTPDKKRPSLELVTLPDVTNRVYIISPPLVTEAEPTLTALLRRIS
PYVPKVNRSARGLEYDFVDFCVRVGMSFDRHGGAAGVVVEIEYRPCSYSA
DCEALIAELMERIAAPLVPPPQASSDPGISAAATTAYSYNRIEIDAKKFN
EKDLMPFSQRTEALLFAKLLRS*

mRNA from alignment at NODE_290_length_32094_cov_4.541512:3361..5686-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2525.t1 ID=Gcaud2525.t1|Name=Gcaud2525.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2326bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:3361..5686- (Gracilaria caudata M_176_S67 male)
ATGTCGCGTCAACAACGTACAGAGCTAATCGATCTCACCGAAACACCGTT
GATATCCGAAGCGCCGGCGGCGCGTCCGTTGCGTCGCTCCACGCGCGCGC
GTCGACAGACGGAGCCGTTTACCGTGGAGGTGGACCAGCGCACGGCCGCA
AAGCTCACCCCGAAGGAGCAGCGTTTGGAGCAGTTGCCGTATTGTACCGC
CGAGCAGCTCGGCATTGACCCGCTGTCCGTGCCGTACATCCGCGTGCATC
CGGTCGCGCTCGCCTTGATCACATTTCACGCGCATCTCACCAAGACCGAG
ATCATCGGCTATTTGGGCGGCTTTGTTACGCACGTCGGTGCCAGATGCGA
GATTCTCATAGCCGAGGCGTTTCCGGCGCGACAGGTCAAGCCTAGCGACT
TGGCGAAGACGGGGCGCTCTGCTTTCAGTGAGGTGGAGGCTCTGCCGGAG
AGCACCATCGAGATCGCCAGTCGCGCCGAGGCCAAGGGCATGCGAGTGGT
GGGATGGTATCATAGCCACCCCGACGAGACCTTTACAACCGAACCGTCGC
GCGTCGACATTGAGAATCAGCAGAATTACCAGCAGCATGTGTACAAGGAT
GATCCTTTTGTAGCAGCCATCATTGCGCCATACAACGAACAACTTCCGGA
TCACCGTCCGGACATCCAGTTTTTCCGCGTGTCGGCGGACGAAGCGCCTT
TGCAGATGCCGTACGAGGTCTGTTACTCGCGCCTTGCCCAACACCTGCAC
CCGTTGACACCCCAGGCGATCACTTTTCCGTTGGATGCTTTCATGGGCGA
ATGCTATGACCTCATTTCAGAGTACTCTGCGTTTGGACGTCGGGTACGAC
TGGAAAAGGAATGGCGACATCAAGTGTTGGGTTTTGTGAAACTCAAACGC
GCCCTTTACGAAATTGTGCAATCCCAACAACTTTCGGAACAGGAGCAGTT
GTATCGTTCGGCGGTTGATTCGCTTGTTTTGGCTGTCGAACGCGCTTGGA
ACGATAGCGCGGAACAAGAACTGGAGAGACGTAGACAGAACGCGGCCAAG
AAACGCAAAAAGCGTAGCCGACGATGGTGAGTGTGACTTTTAAGAACTCT
TTTCGTTTCTCTTCTGCTTAACTTGAACTCTGTACACTACGCCAGCATCA
ACAAGCTCGACATCATCATCTGCTTGAATCGCTAGTTTTGCGCTGTTGAC
CATGATACGAAACCGCTCTGTACGTCTTGTGTTTAGTTCGAAGGTAGATA
CCCAATAAACCCTTTTTTTGTTAACAACCCACGTTTTGAACTTTGCGTTT
CATCTTGGGGAGGATCAAATTCAATTTTTGCCATTTTCATCAGCGCCCTC
CTTCGCAGAAGGTAGCGTTCTACCGTCGTACAAAGGTACGCTACCGTCGG
TAAGCACAGGGCTCAGTTCGTTTTCGGGAAAAGGCCCTGGAGGATAGGTC
CACCCGCCAACTCCCACCAAGCCTTTCAAACAATTCGTTCCCGCGTCGGT
GACTGCGGTGAATGGTGAGCACCTGCTTCTTGGTGCAGCCGGCGGTAACT
TGACAATCGCACAAACACAGCGCATGCGTCCGTCATTCCGAGTGTTCCTC
GCCCCGTCGACGGAATCATGGGTGCCAAGTGGTGAGTTCTCCACAACGCG
GACCATGGAATCATGTATCTTTGCCAGCGTCTCTGACTAACATTCCCGCA
GCGTTTACGACATTTCAACAGAGGGCACCTCGCCGGCAATGGTGCAGCGA
GAAATCATCCGTCGCATCGAAGCACACACCGGTCGCAAGTCTGGAACATG
GCAGGTCAGTGTGTCCATCCACACCACGCCAGACAAGAAGCGACCGTCAT
TAGAGCTCGTCACGCTTCCAGATGTGACCAATCGCGTGTATATCATCTCG
CCCCCGCTCGTAACAGAGGCTGAACCCACTCTCACCGCGCTTCTGCGTCG
CATCTCGCCATACGTGCCTAAGGTGAATCGCTCAGCGCGTGGGTTGGAGT
ACGATTTCGTGGACTTTTGCGTGCGAGTGGGAATGTCATTTGATCGGCAT
GGCGGCGCCGCTGGCGTGGTGGTTGAAATTGAATATCGTCCTTGTTCTTA
TAGTGCCGACTGTGAGGCGCTTATTGCGGAGCTTATGGAACGCATTGCGG
CACCGCTTGTGCCTCCTCCGCAGGCGAGCAGTGATCCTGGCATCAGTGCG
GCTGCCACCACTGCTTATAGCTACAACAGAATTGAGATCGATGCCAAGAA
ATTCAATGAGAAGGATTTGATGCCGTTTTCACAACGAACGGAGGCTCTTC
TGTTTGCAAAGCTGCTCAGATCATAA

Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:3361..5686-

>Gcaud2525.t1 ID=Gcaud2525.t1|Name=Gcaud2525.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1869bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:3361..5686- (Gracilaria caudata M_176_S67 male)
ATGTCGCGTCAACAACGTACAGAGCTAATCGATCTCACCGAAACACCGTT
GATATCCGAAGCGCCGGCGGCGCGTCCGTTGCGTCGCTCCACGCGCGCGC
GTCGACAGACGGAGCCGTTTACCGTGGAGGTGGACCAGCGCACGGCCGCA
AAGCTCACCCCGAAGGAGCAGCGTTTGGAGCAGTTGCCGTATTGTACCGC
CGAGCAGCTCGGCATTGACCCGCTGTCCGTGCCGTACATCCGCGTGCATC
CGGTCGCGCTCGCCTTGATCACATTTCACGCGCATCTCACCAAGACCGAG
ATCATCGGCTATTTGGGCGGCTTTGTTACGCACGTCGGTGCCAGATGCGA
GATTCTCATAGCCGAGGCGTTTCCGGCGCGACAGGTCAAGCCTAGCGACT
TGGCGAAGACGGGGCGCTCTGCTTTCAGTGAGGTGGAGGCTCTGCCGGAG
AGCACCATCGAGATCGCCAGTCGCGCCGAGGCCAAGGGCATGCGAGTGGT
GGGATGGTATCATAGCCACCCCGACGAGACCTTTACAACCGAACCGTCGC
GCGTCGACATTGAGAATCAGCAGAATTACCAGCAGCATGTGTACAAGGAT
GATCCTTTTGTAGCAGCCATCATTGCGCCATACAACGAACAACTTCCGGA
TCACCGTCCGGACATCCAGTTTTTCCGCGTGTCGGCGGACGAAGCGCCTT
TGCAGATGCCGTACGAGGTCTGTTACTCGCGCCTTGCCCAACACCTGCAC
CCGTTGACACCCCAGGCGATCACTTTTCCGTTGGATGCTTTCATGGGCGA
ATGCTATGACCTCATTTCAGAGTACTCTGCGTTTGGACGTCGGGTACGAC
TGGAAAAGGAATGGCGACATCAAGTGTTGGGTTTTGTGAAACTCAAACGC
GCCCTTTACGAAATTGTGCAATCCCAACAACTTTCGGAACAGGAGCAGTT
GTATCGTTCGGCGGTTGATTCGCTTGTTTTGGCTGTCGAACGCGCTTGGA
ACGATAGCGCGGAACAAGAACTGGAGAGACGTAGACAGAACGCGGCCAAG
AAACGCAAAAAGCGTAGCCGACGATGTTTTGCGCTGTTGACCATGATACG
AAACCGCTCTGATCAAATTCAATTTTTGCCATTTTCATCAGCGCCCTCCT
TCGCAGAAGGTAGCGTTCTACCGTCGTACAAAGCGCATGCGTCCGTCATT
CCGAGTGTTCCTCGCCCCGTCGACGGAATCATGGGTGCCAAGTGCGTTTA
CGACATTTCAACAGAGGGCACCTCGCCGGCAATGGTGCAGCGAGAAATCA
TCCGTCGCATCGAAGCACACACCGGTCGCAAGTCTGGAACATGGCAGGTC
AGTGTGTCCATCCACACCACGCCAGACAAGAAGCGACCGTCATTAGAGCT
CGTCACGCTTCCAGATGTGACCAATCGCGTGTATATCATCTCGCCCCCGC
TCGTAACAGAGGCTGAACCCACTCTCACCGCGCTTCTGCGTCGCATCTCG
CCATACGTGCCTAAGGTGAATCGCTCAGCGCGTGGGTTGGAGTACGATTT
CGTGGACTTTTGCGTGCGAGTGGGAATGTCATTTGATCGGCATGGCGGCG
CCGCTGGCGTGGTGGTTGAAATTGAATATCGTCCTTGTTCTTATAGTGCC
GACTGTGAGGCGCTTATTGCGGAGCTTATGGAACGCATTGCGGCACCGCT
TGTGCCTCCTCCGCAGGCGAGCAGTGATCCTGGCATCAGTGCGGCTGCCA
CCACTGCTTATAGCTACAACAGAATTGAGATCGATGCCAAGAAATTCAAT
GAGAAGGATTTGATGCCGTTTTCACAACGAACGGAGGCTCTTCTGTTTGC
AAAGCTGCTCAGATCATAA