Gcaud2529.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2529.t1
Unique NameGcaud2529.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length241
Homology
BLAST of Gcaud2529.t1 vs. uniprot
Match: A0A2V3J0Q8_9FLOR (U2 small nuclear ribonucleoprotein B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0Q8_9FLOR)

HSP 1 Score: 311 bits (797), Expect = 2.010e-104
Identity = 178/256 (69.53%), Postives = 194/256 (75.78%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRKKRAAKRRADQQATKRARMEAA----------------SNIAPVQPPTNGVTAVREPPPMPAPAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            MDAPAPCRTLYVRNLPDKLKK RLRRLLHAA SPYG+VVHIVAEKS+ LRGQAFITF TQASATAALRKLHA+EFMG  ISVSYAR+LSDKA S+KLGGDS L R KRAAKRRAD  A KR  + AA                S   P  PP   + A   P P+ APAVPNRILF QN+P ++++  KK  + DVLSDLFARFAGFVEVRSVP   TIAFVEF +E EAAVALSGL  HPLG PPQPI +SFANK
Sbjct:    1 MDAPAPCRTLYVRNLPDKLKKHRLRRLLHAACSPYGRVVHIVAEKSIPLRGQAFITFHTQASATAALRKLHASEFMGNHISVSYARALSDKAASEKLGGDSTLSRNKRAAKRRADALAVKRDHIAAAEQQQQQHALASTAVPSSTAMPNAPP---IVAAIVPHPIAAPAVPNRILFVQNIPTALDKHAKKELVSDVLSDLFARFAGFVEVRSVPGKHTIAFVEFSSEQEAAVALSGLNAHPLGDPPQPIHVSFANK 253          
BLAST of Gcaud2529.t1 vs. uniprot
Match: R7QCR0_CHOCR (\Probable U2 small nuclear ribonucleoprotein B (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCR0_CHOCR)

HSP 1 Score: 151 bits (381), Expect = 2.150e-43
Identity = 78/106 (73.58%), Postives = 90/106 (84.91%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRK 106
            MDA  PCRTLYVRNLPDKL K +LRRLLHAAF+P+G VV IVAEK+L LRGQAFITF  Q+SAT ALRK HATEF+G+ +SV+YAR++SD+A S KLGGDS L RK
Sbjct:    1 MDANPPCRTLYVRNLPDKLAKAKLRRLLHAAFTPHGHVVWIVAEKTLKLRGQAFITFEQQSSATQALRKTHATEFLGRVLSVTYARAVSDRAASAKLGGDSALSRK 106          
BLAST of Gcaud2529.t1 vs. uniprot
Match: C1EBP4_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBP4_MICCC)

HSP 1 Score: 132 bits (331), Expect = 2.200e-34
Identity = 101/246 (41.06%), Postives = 134/246 (54.47%), Query Frame = 0
Query:    2 DAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRKKRAAKRRADQQATKR------ARMEAASNIAPVQPPTNGVTA-VREPPPMPAPAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            D P PC T+YV NL +K KK  L + L A F  +G+++ IVA KS  LRGQA++ F   ASATAA+R +    F  K + ++YA++ SD     +   D      +  AKR+A+ QA ++      A  +AAS          GVTA VR  P  P    PN ILF Q LP +        +   +LS LF +F GF EVR V A   IAFVEF  +A+A+VALSGLQ   +  P   +TL+FA K
Sbjct:    3 DIP-PCATIYVNNLNEKTKKDELVKSLQAIFGQFGKIIDIVASKSYKLRGQAWVVFADVASATAAMRAMQEFPFYDKPMRIAYAKTKSDATAKAEGTFDPSARDPEMRAKRKAESQAAEKESXXXXAERDAAS----------GVTAKVRTDPSAP----PNEILFVQGLPGA--------TTAAMLSMLFQQFPGFKEVRMVEAKPGIAFVEFETDAQASVALSGLQGFKIN-PTHSMTLAFAAK 224          
BLAST of Gcaud2529.t1 vs. uniprot
Match: D0N2K1_PHYIT (U1 small nuclear ribonucleoprotein A n=10 Tax=Phytophthora TaxID=4783 RepID=D0N2K1_PHYIT)

HSP 1 Score: 130 bits (327), Expect = 1.100e-33
Identity = 92/239 (38.49%), Postives = 138/239 (57.74%), Query Frame = 0
Query:    2 DAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRKKRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVREPPPMPAPAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            D P P  TLY+ NL DK+K  R++  L+A  S YG+++ IV  ++  LRGQA++TF    SA++ALR ++ T    K + + +A+  +D     +    S +PR+KR    + +QQ TK+   +A++N +     T   TA +  P MPA  +PN+ILF + LP S  +E        +L  LF ++ GF EVR VP    +AFVEFG+EA+AA+AL GL    L  P + + +SFA K
Sbjct:   15 DVP-PNHTLYLNNLNDKIKADRMKATLYATLSQYGKILEIVMGRARRLRGQAWVTFDDVPSASSALRTVNGTTLFDKPVVIHFAKEKADVIARRE---GSFVPREKRKRDPKPEQQTTKK---QASANGSAAA--TGSSTAAQ--PRMPAQNLPNKILFLEELPESCNKE--------MLGVLFKQYQGFKEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKL-TPTEALKVSFAKK 233          
BLAST of Gcaud2529.t1 vs. uniprot
Match: A0A662Y965_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y965_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.990e-31
Identity = 92/239 (38.49%), Postives = 132/239 (55.23%), Query Frame = 0
Query:    2 DAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRKKRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVREPPPMPAPAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            D P P  TLY+ NL DK+K+ R++  L++ FS +G+++ IV  ++  LRGQA++TF   ASA+ ALR ++ +    K   V +A+   DKA        + +PR+KR  KR     A K  ++  A             + V  PPP PA  VP++ILF Q LP S  +E        +LS LF ++ GF EVR VP    +AFVEFG+EA+A++AL GL    L  P   + +SFA K
Sbjct:   13 DVP-PNHTLYLNNLNDKIKQDRMKAALYSGFSQHGKILEIVMGRARRLRGQAWLTFDDIASASNALRAMNGSVLFDKPAVVRFAK---DKADVIARREGTFVPREKR--KREPKPAADKATQLPGAKKQVGENGSAAAPSPVALPPPPPAQNVPHKILFLQELPESCNKE--------MLSVLFKQYHGFKEVRMVPGKKGLAFVEFGDEAQASIALQGLFGFKL-TPTDALKVSFAKK 236          
BLAST of Gcaud2529.t1 vs. uniprot
Match: A0A5B8MSV7_9CHLO (U1 small nuclear ribonucleoprotein A n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSV7_9CHLO)

HSP 1 Score: 120 bits (302), Expect = 5.410e-30
Identity = 86/235 (36.60%), Postives = 125/235 (53.19%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSD-------------KAGSDKLGGDSKLPRKKRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVREPPPMPAPAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQ 222
            +D   P +T+YV NL +KL K  LR+ LHA FS +G+++ IV  K+  LRGQA++ F    SAT ALR +    F  K + ++YA++ SD             KA + ++  + +   +KRAA R+   +  ++A   A + +A       G     EP        P+ ILF QNLP +  +         +++ LF +F GF EVR V     IAFVEFGNE E++VALSGLQ
Sbjct:    3 IDGSLPNQTVYVSNLYEKLSKDELRKSLHAVFSQFGKILDIVCMKNYRLRGQAWVVFEDITSATNALRLMQGFPFYDKPMKIAYAKTKSDAVAKLDGTYVSRDKAETARVNKEKREALQKRAAMRKGGSRPDQQAPFAAGAALA-------GTLDSEEP--------PHNILFVQNLPPATSQA--------MIAMLFEQFPGFKEVRMVETRPGIAFVEFGNEMESSVALSGLQ 214          
BLAST of Gcaud2529.t1 vs. uniprot
Match: A0A8B7YWT6_ACAPL (U1 small nuclear ribonucleoprotein A-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7YWT6_ACAPL)

HSP 1 Score: 120 bits (302), Expect = 6.590e-30
Identity = 95/254 (37.40%), Postives = 131/254 (51.57%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRKKRAAKRRADQ---QATKRARMEAASNIAPVQPPTNG-----------VTAVREPPPMPAPAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            M+ P P +T+Y+ NL +K+KK  L++ L+A FS +GQ++ IVA K+L +RGQAF+ F    SAT ALR +    F  K + + YA+S SD     KL G + +PR+KR  KR+ D    Q+ K  +  A +N AP  PP  G                       P  PN ILF  NLP     +        +L  LF +F GF EVR VP    IAFVEF NE ++ +A   LQ   +  P   + +S+A K
Sbjct:    1 MNVP-PNQTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDINSATNALRSMQGFPFYEKPMRIQYAKSQSDAVA--KLQG-TYVPREKRPEKRKPDPTPAQSKKSKKQAANANQAP--PPMMGQXXXXXXXXXXXXXXXXXXXXXLPDQPNAILFLTNLPEETNEQ--------MLKMLFTQFQGFKEVRLVPGRHDIAFVEFENETQSGIAKDALQGFKI-TPTAAMKISYAKK 239          
BLAST of Gcaud2529.t1 vs. uniprot
Match: A0A1B6J3Y7_9HEMI (Uncharacterized protein n=4 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6J3Y7_9HEMI)

HSP 1 Score: 120 bits (301), Expect = 8.820e-30
Identity = 86/243 (35.39%), Postives = 126/243 (51.85%), Query Frame = 0
Query:    6 PCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRKKRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVREPPPMPAPAV--------PNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            P  T+Y+ NL +K+KK  L++ L+A FS +GQ++ I+A K++ +RGQAF+ F   AS+T ALR +    F  K + + YA++ SD     K G  ++ P+K +      D    K+ + +AA   A V    +  T V++PPP+             PN+ILF  NLP              +LS LF +F GF EVR VP    IAFVEF NE ++  A   L    +  P   + +SFA K
Sbjct:    5 PSHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIIALKTMKMRGQAFVIFKEIASSTNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMK-GTYAERPKKPKKTVPHDDPAEAKKVKRKAAKEQARVYQQQSAPTPVQQPPPLQTGVAAASVPEQPPNQILFLTNLPDETSEM--------MLSMLFNQFPGFKEVRLVPNRHDIAFVEFENELQSGAAKVALNGFKI-TPTHAMKISFAKK 237          
BLAST of Gcaud2529.t1 vs. uniprot
Match: A0A7S0HCA2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HCA2_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 9.960e-30
Identity = 89/253 (35.18%), Postives = 131/253 (51.78%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRK-KRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVRE------------PPPMPAPAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            M  PAP  T+YV N+ +K+ K  L++ L+AAFS +G ++ ++A K+  +RGQAF+ F    +AT A+R++    F  K + +SYA S SD     KL G  +   K +RA+KR+A           A +    V        AV E            PP  P  A+PN+ILF +NLP  V           +LS LF +F GF EVR VP    IAFVEF N+ ++  A+ GLQ+  +  P   + +++A +
Sbjct:   30 MAEPAPRETIYVNNINEKVSKDELKKSLYAAFSQFGPILDVIALKTFKMRGQAFVVFRDITAATQAVRQMQGFPFYEKPMMISYANSKSDAVA--KLDGSYEAKDKAERASKRKAXXXXXXXXXXXALAKPKEVAEAGVATPAVGEAVAAAPVERKKAPPSAPTVALPNQILFVENLPDQVNEM--------MLSMLFQQFPGFKEVRLVPGKAGIAFVEFENDVQSGTAMQGLQNFKI-TPTNLMKITYAKR 271          
BLAST of Gcaud2529.t1 vs. uniprot
Match: A0A1Y1IC41_KLENI (Putative RNA recognition motif containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IC41_KLENI)

HSP 1 Score: 120 bits (301), Expect = 1.180e-29
Identity = 93/256 (36.33%), Postives = 139/256 (54.30%), Query Frame = 0
Query:    5 APCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALRGQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGDSKLPRKKRAAKRRADQQATKRARMEAASNIAPVQ-----------------PPTNGVTAVREPPPMP---APAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPANDTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK 240
            AP +T+YV NL +K+KK  +++ L+A FS +G+++ IV  K+L LRGQA++ F    +AT ALR++    F  K + ++YA++ SD     K  G      K++A + R  ++A KRA   AA+   P                    P  G      PPPM    APA PN +LF +NLP     E  K+    +LS LF +F GF EVR + +   IAFVEF +E ++ VA+SGLQ + +  P  P+ +++A K
Sbjct:   11 APNQTIYVSNLNEKIKKEEMKKSLYAVFSQFGKILDIVNLKTLKLRGQAWVVFDDITAATNALRQMQGFPFYDKPMKIAYAKTKSDAVS--KADGTFVPREKRKAIEEREKEKARKRA---AAAGPVPAALXXXXXXXXXXXXXXXXXPAYGYGM---PPPMAVPEAPAPPNNLLFVENLPL----EASKL----MLSTLFNQFPGFKEVRMIESKPGIAFVEFSDENQSTVAMSGLQGYRI-TPTNPMLITYAKK 249          
The following BLAST results are available for this feature:
BLAST of Gcaud2529.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0Q8_9FLOR2.010e-10469.53U2 small nuclear ribonucleoprotein B n=1 Tax=Graci... [more]
R7QCR0_CHOCR2.150e-4373.58\Probable U2 small nuclear ribonucleoprotein B (Fr... [more]
C1EBP4_MICCC2.200e-3441.06Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
D0N2K1_PHYIT1.100e-3338.49U1 small nuclear ribonucleoprotein A n=10 Tax=Phyt... [more]
A0A662Y965_9STRA3.990e-3138.49Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A5B8MSV7_9CHLO5.410e-3036.60U1 small nuclear ribonucleoprotein A n=1 Tax=Chlor... [more]
A0A8B7YWT6_ACAPL6.590e-3037.40U1 small nuclear ribonucleoprotein A-like n=2 Tax=... [more]
A0A1B6J3Y7_9HEMI8.820e-3035.39Uncharacterized protein n=4 Tax=Cicadellinae TaxID... [more]
A0A7S0HCA2_9EUKA9.960e-3035.18Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A1Y1IC41_KLENI1.180e-2936.33Putative RNA recognition motif containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 158..236
e-value: 0.18
score: 13.2
coord: 9..83
e-value: 6.7E-13
score: 58.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 180..224
e-value: 7.7E-5
score: 22.4
coord: 10..80
e-value: 8.0E-10
score: 38.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..87
score: 14.91398
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..240
score: 9.592695
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 149..240
e-value: 1.9E-11
score: 45.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..97
e-value: 3.3E-24
score: 87.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..123
NoneNo IPR availablePANTHERPTHR10501:SF13U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 5..240
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 5..240
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 9..86
e-value: 2.40457E-32
score: 111.081
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 156..222
e-value: 9.11725E-18
score: 72.9867
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:10924..11646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2529.t1Gcaud2529.t1Gracilaria caudata M_176_S67 malemRNANODE_290_length_32094_cov_4.541512 10924..11646 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2529.t1 ID=Gcaud2529.t1|Name=Gcaud2529.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=241bp
MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALR
GQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGD
SKLPRKKRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVREPPPMP
APAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPAN
DTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf