Gcaud2529.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2529.t1
Unique NameGcaud2529.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_290_length_32094_cov_4.541512contigNODE_290_length_32094_cov_4.541512:10924..11646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002504499.1
PFAMsRRM_1
Max annot lvl3041|Chlorophyta
KEGG koko:K11094
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Evalue2.33e-33
EggNOG OGsKOG4206@1|root,KOG4206@2759|Eukaryota,37HTB@33090|Viridiplantae,34KHZ@3041|Chlorophyta
DescriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2529Gcaud2529Gracilaria caudata M_176_S67 malegeneNODE_290_length_32094_cov_4.541512 10924..11646 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2529.t1.stop1Gcaud2529.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_290_length_32094_cov_4.541512 10924..10926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2529.t1.CDS1Gcaud2529.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_290_length_32094_cov_4.541512 10924..11646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2529.t1.exon1Gcaud2529.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_290_length_32094_cov_4.541512 10924..11646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2529.t1.start1Gcaud2529.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_290_length_32094_cov_4.541512 11644..11646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2529.t1Gcaud2529.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_290_length_32094_cov_4.541512 10924..11646 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2529.t1 ID=Gcaud2529.t1|Name=Gcaud2529.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=241bp
MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALR
GQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGD
SKLPRKKRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVREPPPMP
APAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPAN
DTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK*
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spliced messenger RNA

>Gcaud2529.t1 ID=Gcaud2529.t1|Name=Gcaud2529.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:10924..11646- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCCCCGCACCCTGCAGAACGCTGTACGTGCGAAATCTACCAGA
CAAGCTCAAAAAAGTGCGTCTTCGTCGTCTCCTTCACGCCGCCTTCAGTC
CGTATGGCCAAGTCGTTCACATCGTCGCCGAGAAATCTCTCGCACTTCGC
GGCCAAGCGTTTATAACCTTTCTCACGCAGGCCTCCGCAACAGCCGCGCT
ACGAAAGCTACACGCTACCGAATTCATGGGGAAGCAAATCTCCGTAAGTT
ATGCGCGCTCTTTATCGGACAAAGCGGGCAGTGACAAGTTAGGAGGCGAT
TCGAAACTGCCCAGAAAGAAAAGGGCTGCCAAGCGACGCGCCGATCAACA
AGCCACAAAGCGCGCCCGGATGGAAGCCGCTTCCAATATCGCGCCCGTAC
AGCCGCCAACGAATGGGGTTACTGCTGTGCGCGAGCCACCTCCTATGCCG
GCGCCTGCTGTGCCCAATCGCATTCTGTTCGCGCAGAACCTGCCGAGAAG
CGTGGAACGAGAGGGCAAGAAAGTGTCGTTGGTGGATGTGCTTTCGGATT
TGTTTGCGCGCTTTGCGGGCTTTGTTGAGGTGCGGTCCGTACCGGCCAAC
GATACGATTGCGTTTGTCGAGTTTGGGAATGAGGCGGAGGCTGCGGTTGC
GCTTTCGGGTTTGCAACATCATCCACTGGGTATTCCTCCTCAGCCAATAA
CTCTTTCGTTTGCTAATAAATGA
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protein sequence of Gcaud2529.t1

>Gcaud2529.t1 ID=Gcaud2529.t1|Name=Gcaud2529.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=241bp
MDAPAPCRTLYVRNLPDKLKKVRLRRLLHAAFSPYGQVVHIVAEKSLALR
GQAFITFLTQASATAALRKLHATEFMGKQISVSYARSLSDKAGSDKLGGD
SKLPRKKRAAKRRADQQATKRARMEAASNIAPVQPPTNGVTAVREPPPMP
APAVPNRILFAQNLPRSVEREGKKVSLVDVLSDLFARFAGFVEVRSVPAN
DTIAFVEFGNEAEAAVALSGLQHHPLGIPPQPITLSFANK*
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mRNA from alignment at NODE_290_length_32094_cov_4.541512:10924..11646-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2529.t1 ID=Gcaud2529.t1|Name=Gcaud2529.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:10924..11646- (Gracilaria caudata M_176_S67 male)
ATGGACGCCCCCGCACCCTGCAGAACGCTGTACGTGCGAAATCTACCAGA
CAAGCTCAAAAAAGTGCGTCTTCGTCGTCTCCTTCACGCCGCCTTCAGTC
CGTATGGCCAAGTCGTTCACATCGTCGCCGAGAAATCTCTCGCACTTCGC
GGCCAAGCGTTTATAACCTTTCTCACGCAGGCCTCCGCAACAGCCGCGCT
ACGAAAGCTACACGCTACCGAATTCATGGGGAAGCAAATCTCCGTAAGTT
ATGCGCGCTCTTTATCGGACAAAGCGGGCAGTGACAAGTTAGGAGGCGAT
TCGAAACTGCCCAGAAAGAAAAGGGCTGCCAAGCGACGCGCCGATCAACA
AGCCACAAAGCGCGCCCGGATGGAAGCCGCTTCCAATATCGCGCCCGTAC
AGCCGCCAACGAATGGGGTTACTGCTGTGCGCGAGCCACCTCCTATGCCG
GCGCCTGCTGTGCCCAATCGCATTCTGTTCGCGCAGAACCTGCCGAGAAG
CGTGGAACGAGAGGGCAAGAAAGTGTCGTTGGTGGATGTGCTTTCGGATT
TGTTTGCGCGCTTTGCGGGCTTTGTTGAGGTGCGGTCCGTACCGGCCAAC
GATACGATTGCGTTTGTCGAGTTTGGGAATGAGGCGGAGGCTGCGGTTGC
GCTTTCGGGTTTGCAACATCATCCACTGGGTATTCCTCCTCAGCCAATAA
CTCTTTCGTTTGCTAATAAATGA
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Coding sequence (CDS) from alignment at NODE_290_length_32094_cov_4.541512:10924..11646-

>Gcaud2529.t1 ID=Gcaud2529.t1|Name=Gcaud2529.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=723bp|location=Sequence derived from alignment at NODE_290_length_32094_cov_4.541512:10924..11646- (Gracilaria caudata M_176_S67 male)
ATGGACGCCCCCGCACCCTGCAGAACGCTGTACGTGCGAAATCTACCAGA
CAAGCTCAAAAAAGTGCGTCTTCGTCGTCTCCTTCACGCCGCCTTCAGTC
CGTATGGCCAAGTCGTTCACATCGTCGCCGAGAAATCTCTCGCACTTCGC
GGCCAAGCGTTTATAACCTTTCTCACGCAGGCCTCCGCAACAGCCGCGCT
ACGAAAGCTACACGCTACCGAATTCATGGGGAAGCAAATCTCCGTAAGTT
ATGCGCGCTCTTTATCGGACAAAGCGGGCAGTGACAAGTTAGGAGGCGAT
TCGAAACTGCCCAGAAAGAAAAGGGCTGCCAAGCGACGCGCCGATCAACA
AGCCACAAAGCGCGCCCGGATGGAAGCCGCTTCCAATATCGCGCCCGTAC
AGCCGCCAACGAATGGGGTTACTGCTGTGCGCGAGCCACCTCCTATGCCG
GCGCCTGCTGTGCCCAATCGCATTCTGTTCGCGCAGAACCTGCCGAGAAG
CGTGGAACGAGAGGGCAAGAAAGTGTCGTTGGTGGATGTGCTTTCGGATT
TGTTTGCGCGCTTTGCGGGCTTTGTTGAGGTGCGGTCCGTACCGGCCAAC
GATACGATTGCGTTTGTCGAGTTTGGGAATGAGGCGGAGGCTGCGGTTGC
GCTTTCGGGTTTGCAACATCATCCACTGGGTATTCCTCCTCAGCCAATAA
CTCTTTCGTTTGCTAATAAATGA
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