Gcaud7344.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7344.t1
Unique NameGcaud7344.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1084_length_14023_cov_4.104579contigNODE_1084_length_14023_cov_4.104579:5082..6161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009041912.1
Preferred nameRAM2
PFAMsPPTA
Max annot lvl2759|Eukaryota
KEGG rclassRC00069,RC03004
KEGG koko:K05955
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0004661,GO:0004662,GO:0004663,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005953,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0007323,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0008360,GO:0009414,GO:0009415,GO:0009628,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010467,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0018344,GO:0019538,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048509,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051604,GO:0051641,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
Evalue4.53e-08
EggNOG OGsCOG5536@1|root,KOG0530@2759|Eukaryota
EC2.5.1.58,2.5.1.59
DescriptionCAAX-protein geranylgeranyltransferase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7344Gcaud7344Gracilaria caudata M_176_S67 malegeneNODE_1084_length_14023_cov_4.104579 5082..6161 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7344.t1.stop1Gcaud7344.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1084_length_14023_cov_4.104579 5082..5084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7344.t1.CDS1Gcaud7344.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1084_length_14023_cov_4.104579 5082..6161 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7344.t1.exon1Gcaud7344.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1084_length_14023_cov_4.104579 5082..6161 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7344.t1.start1Gcaud7344.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1084_length_14023_cov_4.104579 6159..6161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7344.t1Gcaud7344.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1084_length_14023_cov_4.104579 5082..6161 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7344.t1 ID=Gcaud7344.t1|Name=Gcaud7344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp
MLAARVTESDVDQICNALEPRTERVRFTEKVSTSCVFASRRRERTIASVE
AEDDHFCFEMTQNGQPQKPVQLHPIISSFPDVHYTPIYPSKILRLEEPSS
VPHVYALMHAVMKTSERGARTQELAAVAIEHNSGNPTAWLLRRQSAEVLA
EKDKSVWEKEMAYCGSIINENAKNYQAWEYRRYSATHFGLQHEREFTDIV
LAEDEKNYHAWAHRAWLVRKGLTDGELHSTEWYISRDIRNNSAWNHRWMV
LTTTDALERRGEQEMKYALHVMRKASKNEAVWNFIRALCERGVGSELALD
AVYQTLVDDQRCLPARRMLVYGPLKRGNEEVKKHCEFLAKYDWIRERYWQ
SISEKCEEQ*
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spliced messenger RNA

>Gcaud7344.t1 ID=Gcaud7344.t1|Name=Gcaud7344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:5082..6161- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCAGCACGTGTAACAGAATCTGACGTTGATCAGATTTGCAATGC
TCTTGAGCCTCGCACGGAGCGCGTCCGCTTCACCGAAAAGGTGTCCACGA
GTTGTGTATTCGCAAGCCGCCGAAGAGAACGAACTATTGCATCTGTTGAA
GCCGAAGACGACCATTTTTGTTTCGAGATGACCCAAAACGGCCAGCCGCA
GAAGCCGGTGCAGCTTCATCCCATCATCTCCTCGTTTCCTGATGTACACT
ACACTCCAATATATCCTTCAAAAATTCTACGGCTTGAGGAGCCTTCGTCC
GTTCCTCACGTGTACGCGTTGATGCACGCCGTGATGAAGACATCCGAAAG
AGGTGCACGCACCCAGGAGCTAGCCGCTGTGGCGATTGAACACAACAGTG
GGAATCCGACTGCGTGGCTTCTTCGACGCCAGTCTGCTGAAGTTCTGGCG
GAGAAGGACAAGTCCGTGTGGGAAAAGGAAATGGCCTATTGTGGCTCAAT
TATTAATGAGAACGCCAAGAACTACCAGGCCTGGGAGTATCGACGCTACA
GCGCCACTCATTTTGGACTTCAGCACGAACGAGAATTTACCGACATTGTG
CTGGCAGAAGACGAGAAAAACTATCACGCTTGGGCACATCGCGCATGGCT
CGTTCGGAAAGGACTCACAGATGGCGAACTACACTCTACGGAATGGTACA
TCAGCCGGGATATACGCAACAATTCGGCTTGGAATCATCGTTGGATGGTG
CTCACAACCACTGATGCACTTGAGCGTCGGGGTGAGCAGGAAATGAAATA
CGCTCTGCACGTGATGAGAAAAGCTAGCAAGAATGAGGCGGTGTGGAACT
TTATAAGAGCTCTGTGTGAACGAGGAGTTGGATCAGAGTTGGCACTGGAT
GCGGTGTACCAAACACTTGTGGACGATCAAAGGTGTTTGCCTGCAAGAAG
GATGTTGGTGTACGGTCCTCTGAAAAGGGGCAATGAAGAGGTGAAGAAGC
ACTGTGAGTTTCTCGCAAAATACGACTGGATCCGAGAAAGGTACTGGCAG
AGCATTAGCGAAAAGTGCGAGGAGCAGTAA
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protein sequence of Gcaud7344.t1

>Gcaud7344.t1 ID=Gcaud7344.t1|Name=Gcaud7344.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MLAARVTESDVDQICNALEPRTERVRFTEKVSTSCVFASRRRERTIASVE
AEDDHFCFEMTQNGQPQKPVQLHPIISSFPDVHYTPIYPSKILRLEEPSS
VPHVYALMHAVMKTSERGARTQELAAVAIEHNSGNPTAWLLRRQSAEVLA
EKDKSVWEKEMAYCGSIINENAKNYQAWEYRRYSATHFGLQHEREFTDIV
LAEDEKNYHAWAHRAWLVRKGLTDGELHSTEWYISRDIRNNSAWNHRWMV
LTTTDALERRGEQEMKYALHVMRKASKNEAVWNFIRALCERGVGSELALD
AVYQTLVDDQRCLPARRMLVYGPLKRGNEEVKKHCEFLAKYDWIRERYWQ
SISEKCEEQ*
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mRNA from alignment at NODE_1084_length_14023_cov_4.104579:5082..6161-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7344.t1 ID=Gcaud7344.t1|Name=Gcaud7344.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:5082..6161- (Gracilaria caudata M_176_S67 male)
ATGCTGGCAGCACGTGTAACAGAATCTGACGTTGATCAGATTTGCAATGC
TCTTGAGCCTCGCACGGAGCGCGTCCGCTTCACCGAAAAGGTGTCCACGA
GTTGTGTATTCGCAAGCCGCCGAAGAGAACGAACTATTGCATCTGTTGAA
GCCGAAGACGACCATTTTTGTTTCGAGATGACCCAAAACGGCCAGCCGCA
GAAGCCGGTGCAGCTTCATCCCATCATCTCCTCGTTTCCTGATGTACACT
ACACTCCAATATATCCTTCAAAAATTCTACGGCTTGAGGAGCCTTCGTCC
GTTCCTCACGTGTACGCGTTGATGCACGCCGTGATGAAGACATCCGAAAG
AGGTGCACGCACCCAGGAGCTAGCCGCTGTGGCGATTGAACACAACAGTG
GGAATCCGACTGCGTGGCTTCTTCGACGCCAGTCTGCTGAAGTTCTGGCG
GAGAAGGACAAGTCCGTGTGGGAAAAGGAAATGGCCTATTGTGGCTCAAT
TATTAATGAGAACGCCAAGAACTACCAGGCCTGGGAGTATCGACGCTACA
GCGCCACTCATTTTGGACTTCAGCACGAACGAGAATTTACCGACATTGTG
CTGGCAGAAGACGAGAAAAACTATCACGCTTGGGCACATCGCGCATGGCT
CGTTCGGAAAGGACTCACAGATGGCGAACTACACTCTACGGAATGGTACA
TCAGCCGGGATATACGCAACAATTCGGCTTGGAATCATCGTTGGATGGTG
CTCACAACCACTGATGCACTTGAGCGTCGGGGTGAGCAGGAAATGAAATA
CGCTCTGCACGTGATGAGAAAAGCTAGCAAGAATGAGGCGGTGTGGAACT
TTATAAGAGCTCTGTGTGAACGAGGAGTTGGATCAGAGTTGGCACTGGAT
GCGGTGTACCAAACACTTGTGGACGATCAAAGGTGTTTGCCTGCAAGAAG
GATGTTGGTGTACGGTCCTCTGAAAAGGGGCAATGAAGAGGTGAAGAAGC
ACTGTGAGTTTCTCGCAAAATACGACTGGATCCGAGAAAGGTACTGGCAG
AGCATTAGCGAAAAGTGCGAGGAGCAGTAA
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Coding sequence (CDS) from alignment at NODE_1084_length_14023_cov_4.104579:5082..6161-

>Gcaud7344.t1 ID=Gcaud7344.t1|Name=Gcaud7344.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1080bp|location=Sequence derived from alignment at NODE_1084_length_14023_cov_4.104579:5082..6161- (Gracilaria caudata M_176_S67 male)
ATGCTGGCAGCACGTGTAACAGAATCTGACGTTGATCAGATTTGCAATGC
TCTTGAGCCTCGCACGGAGCGCGTCCGCTTCACCGAAAAGGTGTCCACGA
GTTGTGTATTCGCAAGCCGCCGAAGAGAACGAACTATTGCATCTGTTGAA
GCCGAAGACGACCATTTTTGTTTCGAGATGACCCAAAACGGCCAGCCGCA
GAAGCCGGTGCAGCTTCATCCCATCATCTCCTCGTTTCCTGATGTACACT
ACACTCCAATATATCCTTCAAAAATTCTACGGCTTGAGGAGCCTTCGTCC
GTTCCTCACGTGTACGCGTTGATGCACGCCGTGATGAAGACATCCGAAAG
AGGTGCACGCACCCAGGAGCTAGCCGCTGTGGCGATTGAACACAACAGTG
GGAATCCGACTGCGTGGCTTCTTCGACGCCAGTCTGCTGAAGTTCTGGCG
GAGAAGGACAAGTCCGTGTGGGAAAAGGAAATGGCCTATTGTGGCTCAAT
TATTAATGAGAACGCCAAGAACTACCAGGCCTGGGAGTATCGACGCTACA
GCGCCACTCATTTTGGACTTCAGCACGAACGAGAATTTACCGACATTGTG
CTGGCAGAAGACGAGAAAAACTATCACGCTTGGGCACATCGCGCATGGCT
CGTTCGGAAAGGACTCACAGATGGCGAACTACACTCTACGGAATGGTACA
TCAGCCGGGATATACGCAACAATTCGGCTTGGAATCATCGTTGGATGGTG
CTCACAACCACTGATGCACTTGAGCGTCGGGGTGAGCAGGAAATGAAATA
CGCTCTGCACGTGATGAGAAAAGCTAGCAAGAATGAGGCGGTGTGGAACT
TTATAAGAGCTCTGTGTGAACGAGGAGTTGGATCAGAGTTGGCACTGGAT
GCGGTGTACCAAACACTTGTGGACGATCAAAGGTGTTTGCCTGCAAGAAG
GATGTTGGTGTACGGTCCTCTGAAAAGGGGCAATGAAGAGGTGAAGAAGC
ACTGTGAGTTTCTCGCAAAATACGACTGGATCCGAGAAAGGTACTGGCAG
AGCATTAGCGAAAAGTGCGAGGAGCAGTAA
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