Gcaud7344.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7344.t1
Unique NameGcaud7344.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length360
Homology
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BLAST of Gcaud7344.t1 vs. uniprot
Match: A0A2V3IGJ4_9FLOR (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGJ4_9FLOR)

HSP 1 Score: 301 bits (771), Expect = 9.980e-98
Identity = 198/300 (66.00%), Postives = 230/300 (76.67%), Query Frame = 0 
Query:   62 QNGQPQKPVQLHPIISSFPDVHYTPIYPSKILRLEEPSSVPHVYALMHAVMKTSERGARTQELAAVAIEHNSGNPTAWLLRRQSAEVLAEKDKSVWEKEMAYCGSIINENAKNYQAWEYRRYSATHFGLQHEREFTDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWMVLTTTDALERRGEQEMKYALHVMRKASKNEAVWNFIRALCERGVGSELALDAVYQTLVDDQRCLPARRMLVYGPLK---RGNEEVKKHCEFLAKYDWIRERYWQSISEKCEE 358
            QN   Q     HPI S F D  YTP  PS +LR +EP  +PHVY L+ AV+ +SER +RT  LA VAIEHN  NPTAWL+RRQSAE LA+ DKS+WEKEMAYC SII  +AKNYQAWEYRR+ AT FG QHEREF DIV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX W+VLT T ALE RGE+EM++AL  M+ A +NEAVWNFI+AL ERG+G ELAL+A  + +  D+ CLPARR +V+  LK    GNE+VKKHC FLA+ D +R +YWQS+    +E
Sbjct:    4 QNSDAQYSKDQHPIFSEFSDFKYTPTDPSDVLRFDEPPFIPHVYGLLQAVLHSSERSSRTHRLATVAIEHNQSNPTAWLIRRQSAETLAKDDKSIWEKEMAYCASIITNSAKNYQAWEYRRFCATKFGHQHEREFADIVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWVVLTLTGALEERGEEEMQFALSQMKLADRNEAVWNFIQALYERGIGCELALEAAREAIAKDELCLPARRFVVWATLKPGKEGNEDVKKHCAFLAEKDAVRRKYWQSLVGDADE 303
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BLAST of Gcaud7344.t1 vs. uniprot
Match: R7QBF6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBF6_CHOCR)

HSP 1 Score: 136 bits (342), Expect = 2.970e-33
Identity = 129/268 (48.13%), Postives = 169/268 (63.06%), Query Frame = 0 
Query:   84 YTPIYPSKILRLEEPSSVPHVYALMHAVMKTSERGARTQELAAVAIEHNSGNPTAWLLRRQSAEVLAEKDKSVWEKEMAYCGSIINENAKNYQAWEYRRYSATHFGLQHEREFTDIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWMVLTTTDALERRGEQEMKYALHVMRKASKNEAVWNFIRALCERGVGSELALDAVYQTLVDDQRCLPARRMLVYGPLKRGNEEVKKHCEFLAK-YDWIRERYWQ 350
            Y+P+  S +L +       HV+ L++AV K+ ER  R  +L + AI   + +PTAW+LRR+    LAE + ++W  E+ +   II++N KNYQAWE+RR++A    L          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   L T      R + EM +AL ++ KA +NEAVWN+I A+ + G+    A     + L  D  C+PARR LV         EV+KHC+ LA   D IR++YW+
Sbjct:   83 YSPVEFSPVLTINLSDEFRHVFGLLYAVKKSKERSKRALDLTSRAIILQNSSPTAWMLRREVVATLAENNPALWAIELGFTAKIISKNEKNYQAWEHRRFAAESGNLLQTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLVTGLVEGARNDDEMTFALEIVEKAPRNEAVWNYIHAMGKSGLSIAAAKAKAVECLEVDAGCIPARRFLVLNASSSEASEVRKHCQILASGVDPIRKKYWE 350
The following BLAST results are available for this feature:
BLAST of Gcaud7344.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGJ4_9FLOR9.980e-9866.00Protein farnesyltransferase/geranylgeranyltransfer... [more]
R7QBF6_CHOCR2.970e-3348.13Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002088Protein prenyltransferase, alpha subunitPFAMPF01239PPTAcoord: 190..219
e-value: 5.5E-7
score: 29.1
coord: 157..183
e-value: 6.1E-7
score: 28.9
coord: 232..252
e-value: 0.0023
score: 17.6
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 222..256
score: 10.398718
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 156..190
score: 15.886523
NoneNo IPR availableGENE3D1.25.40.120Protein prenylyltransferasecoord: 78..359
e-value: 1.6E-52
score: 180.5
NoneNo IPR availablePANTHERPTHR11129:SF1PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHAcoord: 102..357
NoneNo IPR availablePANTHERPTHR11129PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNITcoord: 102..357
NoneNo IPR availableSUPERFAMILY48439Protein prenylyltransferasecoord: 103..351

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1084_length_14023_cov_4.104579contigNODE_1084_length_14023_cov_4.104579:5082..6161 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7344.t1Gcaud7344.t1Gracilaria caudata M_176_S67 malemRNANODE_1084_length_14023_cov_4.104579 5082..6161 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7344.t1 ID=Gcaud7344.t1|Name=Gcaud7344.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MLAARVTESDVDQICNALEPRTERVRFTEKVSTSCVFASRRRERTIASVE
AEDDHFCFEMTQNGQPQKPVQLHPIISSFPDVHYTPIYPSKILRLEEPSS
VPHVYALMHAVMKTSERGARTQELAAVAIEHNSGNPTAWLLRRQSAEVLA
EKDKSVWEKEMAYCGSIINENAKNYQAWEYRRYSATHFGLQHEREFTDIV
LAEDEKNYHAWAHRAWLVRKGLTDGELHSTEWYISRDIRNNSAWNHRWMV
LTTTDALERRGEQEMKYALHVMRKASKNEAVWNFIRALCERGVGSELALD
AVYQTLVDDQRCLPARRMLVYGPLKRGNEEVKKHCEFLAKYDWIRERYWQ
SISEKCEEQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002088Prenyl_trans_a