Gcaud1437.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1437.t1
Unique NameGcaud1437.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1082_length_14096_cov_4.305677contigNODE_1082_length_14096_cov_4.305677:9838..10443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1437Gcaud1437Gracilaria caudata M_176_S67 malegeneNODE_1082_length_14096_cov_4.305677 9838..10443 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1437.t1.start1Gcaud1437.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1082_length_14096_cov_4.305677 9838..9840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1437.t1.CDS1Gcaud1437.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1082_length_14096_cov_4.305677 9838..10443 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1437.t1.exon1Gcaud1437.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1082_length_14096_cov_4.305677 9838..10443 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1437.t1.stop1Gcaud1437.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1082_length_14096_cov_4.305677 10441..10443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1437.t1Gcaud1437.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1082_length_14096_cov_4.305677 9838..10443 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1437.t1 ID=Gcaud1437.t1|Name=Gcaud1437.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=202bp
MTLPPPSFVQSSALSPFQTRHARLVAPEKQRTAFHSVPKAPRRRPQMQIP
PPSYEHPPLTPEEKGPPGYKWNPDFPGTLKPGLEPDNYPLEDVLNSGVYE
RMEYTEMDIDERDPRIFEPEEDLLEWLAKQGRLIPRGASDDEFETEAERQ
ISGITEEDLDFGDDDSRMIAYYSRQGEGTGAGAGQDFGGFSEPAGDTGFD
I*
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spliced messenger RNA

>Gcaud1437.t1 ID=Gcaud1437.t1|Name=Gcaud1437.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_1082_length_14096_cov_4.305677:9838..10443+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTTCCTCCGCCCTCCTTCGTCCAAAGCAGTGCACTTTCGCCGTT
TCAGACGAGACACGCAAGGTTGGTTGCACCCGAAAAACAACGGACCGCGT
TTCATAGCGTCCCAAAAGCGCCGCGACGACGTCCCCAAATGCAAATCCCT
CCGCCCAGTTACGAGCACCCGCCTCTTACGCCAGAAGAAAAGGGTCCACC
CGGCTACAAATGGAACCCAGATTTTCCCGGAACTCTGAAGCCGGGCCTGG
AACCAGACAACTACCCTCTAGAAGACGTTTTGAACTCTGGCGTGTACGAG
CGCATGGAGTACACCGAAATGGACATTGACGAGAGAGATCCGCGAATTTT
CGAGCCGGAGGAAGACCTTCTGGAATGGCTTGCAAAACAAGGACGACTGA
TTCCGCGCGGCGCCTCGGACGACGAGTTTGAAACCGAGGCGGAACGGCAA
ATAAGCGGCATTACTGAAGAAGACTTGGATTTTGGAGATGATGATAGCAG
AATGATTGCGTATTATTCGCGTCAGGGAGAAGGAACTGGCGCCGGAGCTG
GACAAGACTTTGGAGGATTTTCGGAACCTGCAGGAGATACCGGGTTTGAT
ATTTGA
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protein sequence of Gcaud1437.t1

>Gcaud1437.t1 ID=Gcaud1437.t1|Name=Gcaud1437.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MTLPPPSFVQSSALSPFQTRHARLVAPEKQRTAFHSVPKAPRRRPQMQIP
PPSYEHPPLTPEEKGPPGYKWNPDFPGTLKPGLEPDNYPLEDVLNSGVYE
RMEYTEMDIDERDPRIFEPEEDLLEWLAKQGRLIPRGASDDEFETEAERQ
ISGITEEDLDFGDDDSRMIAYYSRQGEGTGAGAGQDFGGFSEPAGDTGFD
I*
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mRNA from alignment at NODE_1082_length_14096_cov_4.305677:9838..10443+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1437.t1 ID=Gcaud1437.t1|Name=Gcaud1437.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_1082_length_14096_cov_4.305677:9838..10443+ (Gracilaria caudata M_176_S67 male)
ATGACTCTTCCTCCGCCCTCCTTCGTCCAAAGCAGTGCACTTTCGCCGTT
TCAGACGAGACACGCAAGGTTGGTTGCACCCGAAAAACAACGGACCGCGT
TTCATAGCGTCCCAAAAGCGCCGCGACGACGTCCCCAAATGCAAATCCCT
CCGCCCAGTTACGAGCACCCGCCTCTTACGCCAGAAGAAAAGGGTCCACC
CGGCTACAAATGGAACCCAGATTTTCCCGGAACTCTGAAGCCGGGCCTGG
AACCAGACAACTACCCTCTAGAAGACGTTTTGAACTCTGGCGTGTACGAG
CGCATGGAGTACACCGAAATGGACATTGACGAGAGAGATCCGCGAATTTT
CGAGCCGGAGGAAGACCTTCTGGAATGGCTTGCAAAACAAGGACGACTGA
TTCCGCGCGGCGCCTCGGACGACGAGTTTGAAACCGAGGCGGAACGGCAA
ATAAGCGGCATTACTGAAGAAGACTTGGATTTTGGAGATGATGATAGCAG
AATGATTGCGTATTATTCGCGTCAGGGAGAAGGAACTGGCGCCGGAGCTG
GACAAGACTTTGGAGGATTTTCGGAACCTGCAGGAGATACCGGGTTTGAT
ATTTGA
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Coding sequence (CDS) from alignment at NODE_1082_length_14096_cov_4.305677:9838..10443+

>Gcaud1437.t1 ID=Gcaud1437.t1|Name=Gcaud1437.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=606bp|location=Sequence derived from alignment at NODE_1082_length_14096_cov_4.305677:9838..10443+ (Gracilaria caudata M_176_S67 male)
ATGACTCTTCCTCCGCCCTCCTTCGTCCAAAGCAGTGCACTTTCGCCGTT
TCAGACGAGACACGCAAGGTTGGTTGCACCCGAAAAACAACGGACCGCGT
TTCATAGCGTCCCAAAAGCGCCGCGACGACGTCCCCAAATGCAAATCCCT
CCGCCCAGTTACGAGCACCCGCCTCTTACGCCAGAAGAAAAGGGTCCACC
CGGCTACAAATGGAACCCAGATTTTCCCGGAACTCTGAAGCCGGGCCTGG
AACCAGACAACTACCCTCTAGAAGACGTTTTGAACTCTGGCGTGTACGAG
CGCATGGAGTACACCGAAATGGACATTGACGAGAGAGATCCGCGAATTTT
CGAGCCGGAGGAAGACCTTCTGGAATGGCTTGCAAAACAAGGACGACTGA
TTCCGCGCGGCGCCTCGGACGACGAGTTTGAAACCGAGGCGGAACGGCAA
ATAAGCGGCATTACTGAAGAAGACTTGGATTTTGGAGATGATGATAGCAG
AATGATTGCGTATTATTCGCGTCAGGGAGAAGGAACTGGCGCCGGAGCTG
GACAAGACTTTGGAGGATTTTCGGAACCTGCAGGAGATACCGGGTTTGAT
ATTTGA
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