Gcaud7654.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7654.t1
Unique NameGcaud7654.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length78
Homology
BLAST of Gcaud7654.t1 vs. uniprot
Match: UPI001929E926 (60S ribosomal protein L39-2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929E926)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-14
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF+IKKKLAKK RQNR  PHW RL+TDNKIRYN KR
Sbjct:   25 MPSHKTFVIKKKLAKKMRQNRPIPHWIRLRTDNKIRYNAKR 65          
BLAST of Gcaud7654.t1 vs. uniprot
Match: L1IX18_GUITC (Large subunit ribosomal protein L39e, cytoplasmic n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IX18_GUITC)

HSP 1 Score: 68.9 bits (167), Expect = 4.730e-14
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MPAHK+F IKK LAKKARQNRQ P W RL+TDNKIRYN+KR
Sbjct:    1 MPAHKSFKIKKILAKKARQNRQIPQWIRLRTDNKIRYNSKR 41          
BLAST of Gcaud7654.t1 vs. uniprot
Match: A0A166B2T5_DAUCS (Uncharacterized protein n=11 Tax=Pentapetalae TaxID=1437201 RepID=A0A166B2T5_DAUCS)

HSP 1 Score: 68.6 bits (166), Expect = 6.720e-14
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF+IKKKLAKK RQNR  PHW R++TDN IRYN KR
Sbjct:    1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKR 41          
BLAST of Gcaud7654.t1 vs. uniprot
Match: F6HCK9_VITVI (Uncharacterized protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=F6HCK9_VITVI)

HSP 1 Score: 68.6 bits (166), Expect = 8.310e-14
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF+IKKKLAKK RQNR  PHW R++TDN IRYN KR
Sbjct:   10 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKR 50          
BLAST of Gcaud7654.t1 vs. uniprot
Match: A0A0B0NQR1_GOSAR (60S ribosomal L39-1-like protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A0B0NQR1_GOSAR)

HSP 1 Score: 68.6 bits (166), Expect = 8.730e-14
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF+IKKKLAKK RQNR  PHW R++TDN IRYN KR
Sbjct:    1 MPSHKTFIIKKKLAKKKRQNRPIPHWIRMRTDNTIRYNAKR 41          
BLAST of Gcaud7654.t1 vs. uniprot
Match: B9SC04_RICCO (Ribosomal protein L39e, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9SC04_RICCO)

HSP 1 Score: 68.6 bits (166), Expect = 9.880e-14
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF+IKKKLAKK RQNR  PHW R++TDN IRYN KR
Sbjct:   17 MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKR 57          
BLAST of Gcaud7654.t1 vs. uniprot
Match: A0A1R3J7F3_9ROSI (Ribosomal protein L39e n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3J7F3_9ROSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.150e-13
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF+IKKKLAKK RQNR  PHW R++TDN IRYN KR
Sbjct:   23 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKR 63          
BLAST of Gcaud7654.t1 vs. uniprot
Match: F6HCL0_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=F6HCL0_VITVI)

HSP 1 Score: 68.6 bits (166), Expect = 1.310e-13
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF+IKKKLAKK RQNR  PHW R++TDN IRYN KR
Sbjct:   22 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKR 62          
BLAST of Gcaud7654.t1 vs. uniprot
Match: A0A0D3BLW0_BRAOL (Uncharacterized protein n=9 Tax=rosids TaxID=71275 RepID=A0A0D3BLW0_BRAOL)

HSP 1 Score: 67.8 bits (164), Expect = 1.350e-13
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HK+F+IKKKLAKK RQNR  PHW RL+TDN IRYN KR
Sbjct:    1 MPSHKSFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKR 41          
BLAST of Gcaud7654.t1 vs. uniprot
Match: A0A0A0LYE1_CUCSA (Uncharacterized protein n=9 Tax=fabids TaxID=91835 RepID=A0A0A0LYE1_CUCSA)

HSP 1 Score: 67.8 bits (164), Expect = 1.350e-13
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKR 41
            MP+HKTF IKKKLAKK RQNR  PHW RL+TDN IRYN KR
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKR 41          
The following BLAST results are available for this feature:
BLAST of Gcaud7654.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001929E9261.040e-1480.4960S ribosomal protein L39-2 n=1 Tax=Dioscorea caye... [more]
L1IX18_GUITC4.730e-1480.49Large subunit ribosomal protein L39e, cytoplasmic ... [more]
A0A166B2T5_DAUCS6.720e-1475.61Uncharacterized protein n=11 Tax=Pentapetalae TaxI... [more]
F6HCK9_VITVI8.310e-1475.61Uncharacterized protein n=3 Tax=Mesangiospermae Ta... [more]
A0A0B0NQR1_GOSAR8.730e-1475.6160S ribosomal L39-1-like protein n=2 Tax=Gossypium... [more]
B9SC04_RICCO9.880e-1475.61Ribosomal protein L39e, putative n=1 Tax=Ricinus c... [more]
A0A1R3J7F3_9ROSI1.150e-1375.61Ribosomal protein L39e n=1 Tax=Corchorus olitorius... [more]
F6HCL0_VITVI1.310e-1375.61Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A0D3BLW0_BRAOL1.350e-1375.61Uncharacterized protein n=9 Tax=rosids TaxID=71275... [more]
A0A0A0LYE1_CUCSA1.350e-1378.05Uncharacterized protein n=9 Tax=fabids TaxID=91835... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..41
e-value: 5.3E-13
score: 48.4
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 1..42
e-value: 5.6E-19
score: 69.9
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 3..41
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 1..41
NoneNo IPR availablePANTHERPTHR19970:SF31SUBFAMILY NOT NAMEDcoord: 1..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_273_length_32656_cov_4.516229contigNODE_273_length_32656_cov_4.516229:5291..5816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7654.t1Gcaud7654.t1Gracilaria caudata M_176_S67 malemRNANODE_273_length_32656_cov_4.516229 5291..5816 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7654.t1 ID=Gcaud7654.t1|Name=Gcaud7654.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=78bp
MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKRLLNKYFTPS
SLLPIVRSLDIMCLRVDCHSLRFCCAI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000077Ribosomal_L39
IPR023626Ribosomal_L39e_dom_sf