Gcaud7654.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7654.t1
Unique NameGcaud7654.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length78
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_273_length_32656_cov_4.516229contigNODE_273_length_32656_cov_4.516229:5291..5816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog57918.XP_004291939.1
PFAMsRibosomal_L39
Max annot lvl33090|Viridiplantae
KEGG koko:K02924
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue4.09e-15
EggNOG OGsCOG0008@1|root,KOG0002@2759|Eukaryota,37WNV@33090|Viridiplantae
Description60s ribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7654Gcaud7654Gracilaria caudata M_176_S67 malegeneNODE_273_length_32656_cov_4.516229 5291..5816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7654.t1Gcaud7654.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_273_length_32656_cov_4.516229 5291..5816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7654.t1.CDS1Gcaud7654.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 5291..5293 +
Gcaud7654.t1.CDS2Gcaud7654.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 5398..5518 +
Gcaud7654.t1.CDS3Gcaud7654.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 5596..5685 +
Gcaud7654.t1.CDS4Gcaud7654.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_273_length_32656_cov_4.516229 5797..5816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7654.t1.exon1Gcaud7654.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 5291..5293 +
Gcaud7654.t1.exon2Gcaud7654.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 5398..5518 +
Gcaud7654.t1.exon3Gcaud7654.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 5596..5685 +
Gcaud7654.t1.exon4Gcaud7654.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_273_length_32656_cov_4.516229 5797..5816 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7654.t1.start1Gcaud7654.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_273_length_32656_cov_4.516229 5291..5293 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7654.t1.intron1Gcaud7654.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_273_length_32656_cov_4.516229 5294..5397 +
Gcaud7654.t1.intron2Gcaud7654.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_273_length_32656_cov_4.516229 5519..5595 +
Gcaud7654.t1.intron3Gcaud7654.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_273_length_32656_cov_4.516229 5686..5796 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7654.t1.stop1Gcaud7654.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_273_length_32656_cov_4.516229 5814..5816 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7654.t1 ID=Gcaud7654.t1|Name=Gcaud7654.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=78bp
MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKRLLNKYFTPS
SLLPIVRSLDIMCLRVDCHSLRFCCAI*
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spliced messenger RNA

>Gcaud7654.t1 ID=Gcaud7654.t1|Name=Gcaud7654.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=234bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:5291..5816+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCCACAAGACTTTTCTCATCAAGAAGAAGCTTGCCAAGAAGGC
GCGACAGAACCGACAGGCGCCTCATTGGTTTCGACTGAAGACGGACAACA
AGATTCGATACAACAACAAGCGTCTTCTGAACAAGTATTTCACTCCTTCT
TCACTGCTTCCGATAGTGCGGAGCTTGGATATTATGTGTTTGCGTGTTGA
TTGTCATTCGTTGCGATTTTGTTGTGCGATTTGA
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protein sequence of Gcaud7654.t1

>Gcaud7654.t1 ID=Gcaud7654.t1|Name=Gcaud7654.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=78bp
MPAHKTFLIKKKLAKKARQNRQAPHWFRLKTDNKIRYNNKRLLNKYFTPS
SLLPIVRSLDIMCLRVDCHSLRFCCAI*
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mRNA from alignment at NODE_273_length_32656_cov_4.516229:5291..5816+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7654.t1 ID=Gcaud7654.t1|Name=Gcaud7654.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=526bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:5291..5816+ (Gracilaria caudata M_176_S67 male)
ATGGTAAGTTCGAATCCCAATAAGATCGAAGCGTGTGAGTGCTTCTCGAT
GAATGCGAATCACTAATCAACTCGTCGTCGGTTATCTGTGTTTGTGTGTG
TTTACAGCCGGCCCACAAGACTTTTCTCATCAAGAAGAAGCTTGCCAAGA
AGGCGCGACAGAACCGACAGGCGCCTCATTGGTTTCGACTGAAGACGGAC
AACAAGATTCGATACAACAACAAGCGTCGTCACTGGCGTCGCACAAAGCT
TGGTTTCTAAATTCGGCTCGTTCTTACTCGTCTCGCTATGGTTGTCATGC
GTTAGTTCTGAACAAGTATTTCACTCCTTCTTCACTGCTTCCGATAGTGC
GGAGCTTGGATATTATGTGTTTGCGTGTTGATTGTCATTCGTTGCGTACA
TGCATCCAAACTTGCGTACATGCTTGTAACGTTGCGTATTATGTCTCATG
TTCTGCGTCTATGAGATTGGGGAGCTGATTTTGGTAGATCGCATGTTGTG
TTGAAGGATTTTGTTGTGCGATTTGA
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Coding sequence (CDS) from alignment at NODE_273_length_32656_cov_4.516229:5291..5816+

>Gcaud7654.t1 ID=Gcaud7654.t1|Name=Gcaud7654.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=234bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:5291..5816+ (Gracilaria caudata M_176_S67 male)
ATGCCGGCCCACAAGACTTTTCTCATCAAGAAGAAGCTTGCCAAGAAGGC
GCGACAGAACCGACAGGCGCCTCATTGGTTTCGACTGAAGACGGACAACA
AGATTCGATACAACAACAAGCGTCTTCTGAACAAGTATTTCACTCCTTCT
TCACTGCTTCCGATAGTGCGGAGCTTGGATATTATGTGTTTGCGTGTTGA
TTGTCATTCGTTGCGATTTTGTTGTGCGATTTGA
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