Gcaud7666.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7666.t1
Unique Name	Gcaud7666.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	515

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_273_length_32656_cov_4.516229	contig	NODE_273_length_32656_cov_4.516229:29727..31271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7666	Gcaud7666	Gracilaria caudata M_176_S67 male	gene	NODE_273_length_32656_cov_4.516229 29727..31271 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7666.t1.start1	Gcaud7666.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_273_length_32656_cov_4.516229 29727..29729 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7666.t1.CDS1	Gcaud7666.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_273_length_32656_cov_4.516229 29727..31271 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7666.t1.exon1	Gcaud7666.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_273_length_32656_cov_4.516229 29727..31271 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7666.t1.stop1	Gcaud7666.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_273_length_32656_cov_4.516229 31269..31271 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7666.t1	Gcaud7666.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_273_length_32656_cov_4.516229 29727..31271 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_273_length_32656_cov_4.516229:29727..31271+
coding sequence from alignment at NODE_273_length_32656_cov_4.516229:29727..31271+

mRNA sequence

>Gcaud7666.t1 ID=Gcaud7666.t1|Name=Gcaud7666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=515bp
MATPIVSDLPFTERIDMREKALAWISRDTGLQEFLIPDELTTEWSAEQKK
VWTTTVIDRFMSARQHVGREARARVLARENSSWLRRACVRLQQSLADHRD
LTRMAVLLETLWNEVSATFNDSKWAQCSIMFDSALISLRVAYVWLYDKLE
NEDADLQSRQNVFETVVNSFFNSHAPTDDKADKHSANFRALQRVWRTEFE
NYANADDLDAKLKRLEESQNLMKVATAVNRFLNAVNVDASWMWDMQKLQE
DIKAGNVKRRKTPKKAREPAPEPPEPESSGSYEPRVEDSDFDIEIAEKRA
SVEDEDDESEGESDELMRGSMSQRKNNGTMVRRSVRVAQAKSVTYRPTRG
EKRGRHRRAAARRAALRFSESPTPSLSDDSPIARRARVTRRAPTRTHEEL
EMDPNEDVANVGRVSKLTARVGVRRAAPRSGISRGRVLKDTRRRRTIRDP
RNSGKDAEDDDNMGDEYKGLGSGFGIGTDELHGGLGGPTIGGSIPGAPVS
FPDRKTRMAALLES*

spliced messenger RNA

>Gcaud7666.t1 ID=Gcaud7666.t1|Name=Gcaud7666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:29727..31271+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTCCAATCGTTTCCGACTTGCCGTTCACCGAGCGCATAGACAT
GAGAGAGAAGGCGTTGGCTTGGATTTCACGCGATACCGGTCTTCAGGAGT
TTCTCATCCCGGACGAGTTGACAACTGAGTGGAGCGCCGAACAGAAGAAA
GTATGGACTACTACAGTCATTGATCGATTCATGAGTGCGAGACAACACGT
CGGTCGCGAAGCGCGCGCTCGCGTACTCGCGCGTGAAAATTCCAGTTGGT
TGCGACGCGCTTGCGTTCGTTTGCAGCAAAGTCTTGCGGACCATCGAGAC
TTGACCCGTATGGCTGTCTTACTAGAGACTTTGTGGAACGAAGTAAGCGC
TACATTCAACGATTCAAAATGGGCTCAGTGCTCCATCATGTTCGATTCTG
CTCTTATTTCGTTGCGAGTGGCGTATGTTTGGCTTTACGACAAGCTTGAG
AACGAAGACGCCGATTTGCAATCACGCCAAAATGTGTTCGAAACTGTCGT
CAATTCCTTCTTTAACTCTCACGCTCCGACCGATGATAAAGCAGATAAGC
ACTCTGCCAACTTTCGCGCTTTGCAACGCGTGTGGCGCACTGAATTTGAA
AATTACGCCAACGCCGATGATCTCGACGCTAAGCTCAAGCGTTTAGAGGA
GTCTCAAAACTTGATGAAGGTCGCTACAGCTGTAAATAGGTTCCTAAACG
CTGTCAACGTCGATGCCAGCTGGATGTGGGACATGCAAAAACTCCAGGAA
GACATTAAGGCTGGTAACGTCAAGCGACGAAAAACGCCAAAGAAGGCTCG
GGAACCTGCTCCAGAACCCCCAGAACCCGAGTCATCTGGTTCTTATGAGC
CGCGTGTCGAGGACAGCGACTTCGACATCGAAATCGCAGAAAAGAGGGCC
AGCGTTGAGGATGAGGATGACGAGTCGGAAGGAGAATCGGATGAACTCAT
GCGCGGATCCATGTCGCAACGAAAGAATAACGGAACTATGGTCCGCAGGT
CAGTGCGTGTCGCTCAGGCAAAATCGGTCACATACAGACCAACTCGAGGA
GAAAAACGGGGGAGACACAGAAGAGCTGCAGCTCGTCGCGCAGCCCTTCG
TTTTTCAGAATCCCCGACTCCTAGCTTATCCGACGACAGTCCGATAGCAC
GACGGGCACGTGTCACAAGACGAGCCCCCACCCGAACTCACGAAGAGCTA
GAAATGGATCCGAATGAAGACGTTGCCAATGTTGGGCGCGTTTCGAAACT
AACTGCAAGAGTTGGTGTAAGACGTGCAGCACCTCGCTCGGGTATCTCCA
GAGGTCGAGTACTTAAGGATACTCGTAGAAGAAGAACAATCCGCGACCCT
CGAAATTCTGGAAAAGATGCTGAAGATGACGACAATATGGGCGACGAATA
TAAGGGTCTTGGTTCCGGTTTTGGTATTGGAACCGATGAGTTACATGGAG
GTCTCGGTGGTCCTACTATAGGTGGCTCTATTCCTGGCGCACCCGTCTCC
TTTCCAGATCGTAAGACTCGCATGGCAGCATTGTTGGAGTCGTGA

protein sequence of Gcaud7666.t1

>Gcaud7666.t1 ID=Gcaud7666.t1|Name=Gcaud7666.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=515bp
MATPIVSDLPFTERIDMREKALAWISRDTGLQEFLIPDELTTEWSAEQKK
VWTTTVIDRFMSARQHVGREARARVLARENSSWLRRACVRLQQSLADHRD
LTRMAVLLETLWNEVSATFNDSKWAQCSIMFDSALISLRVAYVWLYDKLE
NEDADLQSRQNVFETVVNSFFNSHAPTDDKADKHSANFRALQRVWRTEFE
NYANADDLDAKLKRLEESQNLMKVATAVNRFLNAVNVDASWMWDMQKLQE
DIKAGNVKRRKTPKKAREPAPEPPEPESSGSYEPRVEDSDFDIEIAEKRA
SVEDEDDESEGESDELMRGSMSQRKNNGTMVRRSVRVAQAKSVTYRPTRG
EKRGRHRRAAARRAALRFSESPTPSLSDDSPIARRARVTRRAPTRTHEEL
EMDPNEDVANVGRVSKLTARVGVRRAAPRSGISRGRVLKDTRRRRTIRDP
RNSGKDAEDDDNMGDEYKGLGSGFGIGTDELHGGLGGPTIGGSIPGAPVS
FPDRKTRMAALLES*

mRNA from alignment at NODE_273_length_32656_cov_4.516229:29727..31271+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7666.t1 ID=Gcaud7666.t1|Name=Gcaud7666.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:29727..31271+ (Gracilaria caudata M_176_S67 male)
ATGGCCACTCCAATCGTTTCCGACTTGCCGTTCACCGAGCGCATAGACAT
GAGAGAGAAGGCGTTGGCTTGGATTTCACGCGATACCGGTCTTCAGGAGT
TTCTCATCCCGGACGAGTTGACAACTGAGTGGAGCGCCGAACAGAAGAAA
GTATGGACTACTACAGTCATTGATCGATTCATGAGTGCGAGACAACACGT
CGGTCGCGAAGCGCGCGCTCGCGTACTCGCGCGTGAAAATTCCAGTTGGT
TGCGACGCGCTTGCGTTCGTTTGCAGCAAAGTCTTGCGGACCATCGAGAC
TTGACCCGTATGGCTGTCTTACTAGAGACTTTGTGGAACGAAGTAAGCGC
TACATTCAACGATTCAAAATGGGCTCAGTGCTCCATCATGTTCGATTCTG
CTCTTATTTCGTTGCGAGTGGCGTATGTTTGGCTTTACGACAAGCTTGAG
AACGAAGACGCCGATTTGCAATCACGCCAAAATGTGTTCGAAACTGTCGT
CAATTCCTTCTTTAACTCTCACGCTCCGACCGATGATAAAGCAGATAAGC
ACTCTGCCAACTTTCGCGCTTTGCAACGCGTGTGGCGCACTGAATTTGAA
AATTACGCCAACGCCGATGATCTCGACGCTAAGCTCAAGCGTTTAGAGGA
GTCTCAAAACTTGATGAAGGTCGCTACAGCTGTAAATAGGTTCCTAAACG
CTGTCAACGTCGATGCCAGCTGGATGTGGGACATGCAAAAACTCCAGGAA
GACATTAAGGCTGGTAACGTCAAGCGACGAAAAACGCCAAAGAAGGCTCG
GGAACCTGCTCCAGAACCCCCAGAACCCGAGTCATCTGGTTCTTATGAGC
CGCGTGTCGAGGACAGCGACTTCGACATCGAAATCGCAGAAAAGAGGGCC
AGCGTTGAGGATGAGGATGACGAGTCGGAAGGAGAATCGGATGAACTCAT
GCGCGGATCCATGTCGCAACGAAAGAATAACGGAACTATGGTCCGCAGGT
CAGTGCGTGTCGCTCAGGCAAAATCGGTCACATACAGACCAACTCGAGGA
GAAAAACGGGGGAGACACAGAAGAGCTGCAGCTCGTCGCGCAGCCCTTCG
TTTTTCAGAATCCCCGACTCCTAGCTTATCCGACGACAGTCCGATAGCAC
GACGGGCACGTGTCACAAGACGAGCCCCCACCCGAACTCACGAAGAGCTA
GAAATGGATCCGAATGAAGACGTTGCCAATGTTGGGCGCGTTTCGAAACT
AACTGCAAGAGTTGGTGTAAGACGTGCAGCACCTCGCTCGGGTATCTCCA
GAGGTCGAGTACTTAAGGATACTCGTAGAAGAAGAACAATCCGCGACCCT
CGAAATTCTGGAAAAGATGCTGAAGATGACGACAATATGGGCGACGAATA
TAAGGGTCTTGGTTCCGGTTTTGGTATTGGAACCGATGAGTTACATGGAG
GTCTCGGTGGTCCTACTATAGGTGGCTCTATTCCTGGCGCACCCGTCTCC
TTTCCAGATCGTAAGACTCGCATGGCAGCATTGTTGGAGTCGTGA

Coding sequence (CDS) from alignment at NODE_273_length_32656_cov_4.516229:29727..31271+

>Gcaud7666.t1 ID=Gcaud7666.t1|Name=Gcaud7666.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1545bp|location=Sequence derived from alignment at NODE_273_length_32656_cov_4.516229:29727..31271+ (Gracilaria caudata M_176_S67 male)
ATGGCCACTCCAATCGTTTCCGACTTGCCGTTCACCGAGCGCATAGACAT
GAGAGAGAAGGCGTTGGCTTGGATTTCACGCGATACCGGTCTTCAGGAGT
TTCTCATCCCGGACGAGTTGACAACTGAGTGGAGCGCCGAACAGAAGAAA
GTATGGACTACTACAGTCATTGATCGATTCATGAGTGCGAGACAACACGT
CGGTCGCGAAGCGCGCGCTCGCGTACTCGCGCGTGAAAATTCCAGTTGGT
TGCGACGCGCTTGCGTTCGTTTGCAGCAAAGTCTTGCGGACCATCGAGAC
TTGACCCGTATGGCTGTCTTACTAGAGACTTTGTGGAACGAAGTAAGCGC
TACATTCAACGATTCAAAATGGGCTCAGTGCTCCATCATGTTCGATTCTG
CTCTTATTTCGTTGCGAGTGGCGTATGTTTGGCTTTACGACAAGCTTGAG
AACGAAGACGCCGATTTGCAATCACGCCAAAATGTGTTCGAAACTGTCGT
CAATTCCTTCTTTAACTCTCACGCTCCGACCGATGATAAAGCAGATAAGC
ACTCTGCCAACTTTCGCGCTTTGCAACGCGTGTGGCGCACTGAATTTGAA
AATTACGCCAACGCCGATGATCTCGACGCTAAGCTCAAGCGTTTAGAGGA
GTCTCAAAACTTGATGAAGGTCGCTACAGCTGTAAATAGGTTCCTAAACG
CTGTCAACGTCGATGCCAGCTGGATGTGGGACATGCAAAAACTCCAGGAA
GACATTAAGGCTGGTAACGTCAAGCGACGAAAAACGCCAAAGAAGGCTCG
GGAACCTGCTCCAGAACCCCCAGAACCCGAGTCATCTGGTTCTTATGAGC
CGCGTGTCGAGGACAGCGACTTCGACATCGAAATCGCAGAAAAGAGGGCC
AGCGTTGAGGATGAGGATGACGAGTCGGAAGGAGAATCGGATGAACTCAT
GCGCGGATCCATGTCGCAACGAAAGAATAACGGAACTATGGTCCGCAGGT
CAGTGCGTGTCGCTCAGGCAAAATCGGTCACATACAGACCAACTCGAGGA
GAAAAACGGGGGAGACACAGAAGAGCTGCAGCTCGTCGCGCAGCCCTTCG
TTTTTCAGAATCCCCGACTCCTAGCTTATCCGACGACAGTCCGATAGCAC
GACGGGCACGTGTCACAAGACGAGCCCCCACCCGAACTCACGAAGAGCTA
GAAATGGATCCGAATGAAGACGTTGCCAATGTTGGGCGCGTTTCGAAACT
AACTGCAAGAGTTGGTGTAAGACGTGCAGCACCTCGCTCGGGTATCTCCA
GAGGTCGAGTACTTAAGGATACTCGTAGAAGAAGAACAATCCGCGACCCT
CGAAATTCTGGAAAAGATGCTGAAGATGACGACAATATGGGCGACGAATA
TAAGGGTCTTGGTTCCGGTTTTGGTATTGGAACCGATGAGTTACATGGAG
GTCTCGGTGGTCCTACTATAGGTGGCTCTATTCCTGGCGCACCCGTCTCC
TTTCCAGATCGTAAGACTCGCATGGCAGCATTGTTGGAGTCGTGA