Gcaud2333.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2333.t1
Unique NameGcaud2333.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length72
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1080_length_14143_cov_5.034515contigNODE_1080_length_14143_cov_5.034515:13209..13604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002672593.1
PFAMsDUF814
Max annot lvl2759|Eukaryota
Evalue2.36e-11
EggNOG OGsCOG1293@1|root,2SCHS@2759|Eukaryota
DescriptionDomain of unknown function (DUF814)
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2333Gcaud2333Gracilaria caudata M_176_S67 malegeneNODE_1080_length_14143_cov_5.034515 13209..13604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2333.t1Gcaud2333.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1080_length_14143_cov_5.034515 13209..13604 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2333.t1.stop1Gcaud2333.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1080_length_14143_cov_5.034515 13209..13211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2333.t1.CDS1Gcaud2333.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1080_length_14143_cov_5.034515 13209..13214 -
Gcaud2333.t1.CDS2Gcaud2333.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1080_length_14143_cov_5.034515 13395..13604 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2333.t1.exon1Gcaud2333.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1080_length_14143_cov_5.034515 13209..13214 -
Gcaud2333.t1.exon2Gcaud2333.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1080_length_14143_cov_5.034515 13395..13604 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2333.t1.intron1Gcaud2333.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1080_length_14143_cov_5.034515 13215..13394 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2333.t1.start1Gcaud2333.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1080_length_14143_cov_5.034515 13602..13604 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2333.t1 ID=Gcaud2333.t1|Name=Gcaud2333.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=72bp
MKSVTTSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSV
PGKKKTKAQLSEAIHECAQLK*
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spliced messenger RNA

>Gcaud2333.t1 ID=Gcaud2333.t1|Name=Gcaud2333.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=216bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:13209..13604- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCGTAACTACTTCCGAGGACAACCTTATTGTCCGCGTTGGTGA
CAACGCCAAGGAAAACGACACGCTGTGGCGAGGCGCCAAACAGAATGACC
TTTGGTTCCATTTGGACGGAATGTCGTCTCCTCATGTCCTTCTTTCCGTC
CCGGGCAAGAAGAAGACAAAAGCACAGCTCAGCGAAGCTATACATGAGTG
CGCGCAACTGAAATAG
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protein sequence of Gcaud2333.t1

>Gcaud2333.t1 ID=Gcaud2333.t1|Name=Gcaud2333.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=72bp
MKSVTTSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSV
PGKKKTKAQLSEAIHECAQLK*
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mRNA from alignment at NODE_1080_length_14143_cov_5.034515:13209..13604-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2333.t1 ID=Gcaud2333.t1|Name=Gcaud2333.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=396bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:13209..13604- (Gracilaria caudata M_176_S67 male)
ATGAAGAGCGTAACTACTTCCGAGGACAACCTTATTGTCCGCGTTGGTGA
CAACGCCAAGGAAAACGACACGCTGTGGCGAGGCGCCAAACAGAATGACC
TTTGGTTCCATTTGGACGGAATGTCGTCTCCTCATGTCCTTCTTTCCGTC
CCGGGCAAGAAGAAGACAAAAGCACAGCTCAGCGAAGCTATACATGAGTG
CGCGCAACTGGTAAAGTATTTCTCAAAGGCGCGCGAAATGGCACAAGTTA
CAGTGATGTATATTGAGGCTAAATGGGTATCCGCGGACCCCTCCGGGAAA
GCGGGTTCAGTCATTCTGAAGAAGGAGCCTACAAGAATGAAGGTGGTGTT
TGACGAGAGATGTATTGCATACTTTCTGACACAGTTGAAGAAATAG
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Coding sequence (CDS) from alignment at NODE_1080_length_14143_cov_5.034515:13209..13604-

>Gcaud2333.t1 ID=Gcaud2333.t1|Name=Gcaud2333.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=216bp|location=Sequence derived from alignment at NODE_1080_length_14143_cov_5.034515:13209..13604- (Gracilaria caudata M_176_S67 male)
ATGAAGAGCGTAACTACTTCCGAGGACAACCTTATTGTCCGCGTTGGTGA
CAACGCCAAGGAAAACGACACGCTGTGGCGAGGCGCCAAACAGAATGACC
TTTGGTTCCATTTGGACGGAATGTCGTCTCCTCATGTCCTTCTTTCCGTC
CCGGGCAAGAAGAAGACAAAAGCACAGCTCAGCGAAGCTATACATGAGTG
CGCGCAACTGAAATAG
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