Gcaud2333.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2333.t1
Unique NameGcaud2333.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length72
Homology
BLAST of Gcaud2333.t1 vs. uniprot
Match: A0A2V3J5M7_9FLOR (NFACT-R_1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5M7_9FLOR)

HSP 1 Score: 116 bits (291), Expect = 4.310e-32
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 0
Query:    1 MKSVTTSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQLSEAIHECAQL 70
            MKS+ +S D L++RVG+ A ENDTLWRGAKQNDLWFH DGMSSPHV+LSVPGKKK +AQLS+AIHEC QL
Sbjct:    1 MKSLNSS-DGLLIRVGETAAENDTLWRGAKQNDLWFHADGMSSPHVVLSVPGKKKKEAQLSDAIHECTQL 69          
BLAST of Gcaud2333.t1 vs. uniprot
Match: S0F396_CHOCR (NFACT-R_1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F396_CHOCR)

HSP 1 Score: 79.3 bits (194), Expect = 2.380e-17
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0
Query:    6 TSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQ-LSEAIHECAQL 70
            TS D L +RVG+NA EN  L + AKQNDLWFHL+G SSPH +LSV G K+ K   L  ++HEC QL
Sbjct:    5 TSCDGLSIRVGENAAENQRLCKQAKQNDLWFHLEGQSSPHAILSVGGGKQGKNNALRSSLHECQQL 70          
BLAST of Gcaud2333.t1 vs. uniprot
Match: A0A6A5C0H0_NAEFO (NFACT-R_1 domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C0H0_NAEFO)

HSP 1 Score: 73.2 bits (178), Expect = 5.660e-15
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 0
Query:    6 TSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQLSEAIHECAQL 70
            +S+   ++ VG+NAKENDT+ R A QNDLWFHL  +SSPHV+LS   +  T +  SE+IH+ A L
Sbjct:    7 SSDQLYLITVGENAKENDTIRRQAAQNDLWFHLQDVSSPHVILSPVDRSLTTSFSSESIHQAASL 71          
BLAST of Gcaud2333.t1 vs. uniprot
Match: UPI001D03791E (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D03791E)

HSP 1 Score: 71.2 bits (173), Expect = 3.220e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 0
Query:    7 SEDNL-IVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQLSEAIHECAQL 70
            S DNL ++ VG+NAKENDT+ R A Q+DLWFHL  ++SPHV+LS   +  T +  SE+IH+ A L
Sbjct:    7 SSDNLYLITVGENAKENDTIRRQAAQSDLWFHLQDVASPHVILSPLDRTTTSSFSSESIHQAALL 71          
BLAST of Gcaud2333.t1 vs. uniprot
Match: A0A7J7IC17_9RHOD (NFACT-R_1 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IC17_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.260e-11
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    9 DNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQLSEAIHECAQL 70
            D L  R+G+NA EN  L R A+QND WFHL+ + SPH LL  PG+  T+    EA+  CAQL
Sbjct:    9 DGLRARLGENAAENQMLCRQARQNDWWFHLESLPSPHCLLENPGEAWTEPP-REAVLACAQL 69          
BLAST of Gcaud2333.t1 vs. uniprot
Match: D2VTE8_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VTE8_NAEGR)

HSP 1 Score: 60.8 bits (146), Expect = 3.820e-10
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    6 TSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLL 48
            TS++  ++ VG+NAKEND + + A QNDLWFHL+ +SSPHV+L
Sbjct:    7 TSDNQYLIIVGENAKENDKIRQEASQNDLWFHLEDVSSPHVIL 49          
BLAST of Gcaud2333.t1 vs. uniprot
Match: A0A7R9WI93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WI93_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.080e-10
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 0
Query:    7 SEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVP---GKKKTKAQLSE---AIHECAQL 70
            +ED   + VG++A END L R A Q DLWFHLDG  SPHV+L +    GK+K+    S    AI +  QL
Sbjct:   30 AEDGTPILVGESAIENDQLCRRASQRDLWFHLDGRPSPHVILQLSATVGKRKSSTAASTSAAAIRDACQL 99          
BLAST of Gcaud2333.t1 vs. uniprot
Match: M1V6G6_CYAM1 (NFACT-R_1 domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1V6G6_CYAM1)

HSP 1 Score: 57.4 bits (137), Expect = 6.510e-9
Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 0
Query:    6 TSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQLSEAIHECAQL 70
            T    L  RVG+NA EN  L R A+QND WFHL+ + SPH +L  P     +    EA+  CAQL
Sbjct:    6 TVAGGLRARVGENALENQALCRSARQNDWWFHLESLPSPHCVLENPNGAWREPP-REAVLACAQL 69          
BLAST of Gcaud2333.t1 vs. uniprot
Match: A0A7D3UUG3_9VIRU (DUF814 protein n=1 Tax=Fadolivirus 1 TaxID=2740746 RepID=A0A7D3UUG3_9VIRU)

HSP 1 Score: 54.7 bits (130), Expect = 6.330e-8
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 0
Query:    1 MKSVTTSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQLSEAIHECAQL 70
            +K   T E+NLI R+G NA+END +   AKQ DLWFHL  + S H+++S   +     Q+   I  C QL
Sbjct:    2 VKEDNTFENNLI-RIGQNAEENDQIISEAKQTDLWFHLANLPSCHIIMSCSNEFPVTKQM---ITYCCQL 67          
BLAST of Gcaud2333.t1 vs. uniprot
Match: A0A5K0U8M7_9VIRU (NFACT-R_1 domain-containing protein n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U8M7_9VIRU)

HSP 1 Score: 51.2 bits (121), Expect = 1.550e-6
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 0
Query:   13 VRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSVPGKKKTKAQLSEAIHECAQL 70
            +RVG++A+EN  L   + QND+WFH++G  S HV+LS+  +KK   +    I+ CA L
Sbjct:   17 IRVGESAQENWDLIDASNQNDVWFHVEGHPSCHVVLSLEDRKKKPHK--SVINYCASL 72          
The following BLAST results are available for this feature:
BLAST of Gcaud2333.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2V3J5M7_9FLOR4.310e-3277.14NFACT-R_1 domain-containing protein n=1 Tax=Gracil... [more]
S0F396_CHOCR2.380e-1759.09NFACT-R_1 domain-containing protein n=1 Tax=Chondr... [more]
A0A6A5C0H0_NAEFO5.660e-1552.31NFACT-R_1 domain-containing protein n=1 Tax=Naegle... [more]
UPI001D03791E3.220e-1453.85uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7J7IC17_9RHOD1.260e-1151.61NFACT-R_1 domain-containing protein n=1 Tax=Cyanid... [more]
D2VTE8_NAEGR3.820e-1058.14Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A7R9WI93_9STRA8.080e-1047.14Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
M1V6G6_CYAM16.510e-946.15NFACT-R_1 domain-containing protein n=2 Tax=cellul... [more]
A0A7D3UUG3_9VIRU6.330e-842.86DUF814 protein n=1 Tax=Fadolivirus 1 TaxID=2740746... [more]
A0A5K0U8M7_9VIRU1.550e-643.10NFACT-R_1 domain-containing protein n=1 Tax=Yasmin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008532NFACT, RNA-binding domainPFAMPF05670NFACT-R_1coord: 6..70
e-value: 4.7E-11
score: 43.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1080_length_14143_cov_5.034515contigNODE_1080_length_14143_cov_5.034515:13209..13604 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2333.t1Gcaud2333.t1Gracilaria caudata M_176_S67 malemRNANODE_1080_length_14143_cov_5.034515 13209..13604 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2333.t1 ID=Gcaud2333.t1|Name=Gcaud2333.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=72bp
MKSVTTSEDNLIVRVGDNAKENDTLWRGAKQNDLWFHLDGMSSPHVLLSV
PGKKKTKAQLSEAIHECAQLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008532NFACT_RNA-bd