Gcaud2616.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2616.t1
Unique NameGcaud2616.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length348
Homology
BLAST of Gcaud2616.t1 vs. uniprot
Match: A0A2V3J3G8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3G8_9FLOR)

HSP 1 Score: 378 bits (971), Expect = 1.010e-128
Identity = 182/274 (66.42%), Postives = 222/274 (81.02%), Query Frame = 0
Query:   80 IED-PIPEGPLPFPRIQQNE-----LTTNVHAGSSWIPSFASTMLPTLPSHWLIDNVPQTMVRERASIFTALQTRGWIGCERPFHLVCKGVYRAIKATNAIRVVDIGCERDAAWLPHIVKKLREEFRMVKLTCIGGKSSGFDDIDVEYVKMNVFEDRFPNETDMLVAYKLVEQETLITAMKFLKNVKRSESVQTLVMETFPNSDNSIQDEKLKINTAIAPFWFPTPVYQYLNAEENEEQQEMKIVAVAVDQLFTDRNTPSMMELVDPRKRVVQE 347
            IED  IP+GPL FP ++  +      +T  HAGSSWIPSFAS ++ +LPSHW+I++ P+T+ R   SIF AL++ GWIGCERPFHLVCKGVYRAIKATNAI V +IGCERD AWLPHIV+KLREEFRMV+LTCIG ++SGFD +DV++V MNV++D FPN+TD+LVAYKL++ ETLI+ MKFLKNVKRS +V  LV+ETFP  DN ++D  LK+NTAIAPFWFP  VYQY NA ENEE + M+IV V V ++F  RNTP+M ELVDPRKRVVQE
Sbjct:    6 IEDIAIPDGPLAFPVLRDEDDATKASSTYAHAGSSWIPSFASNVMNSLPSHWIIESAPKTVERGGVSIFKALRSGGWIGCERPFHLVCKGVYRAIKATNAINVANIGCERDVAWLPHIVRKLREEFRMVQLTCIGDRTSGFDGLDVKFVAMNVYDDAFPNDTDLLVAYKLMQSETLISGMKFLKNVKRSGTVDMLVVETFPQGDNKMRDGVLKVNTAIAPFWFPGAVYQYSNAAENEESEMMQIVTVRVAEMFEGRNTPTMAELVDPRKRVVQE 279          
BLAST of Gcaud2616.t1 vs. uniprot
Match: A0A1X6P1A0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1A0_PORUM)

HSP 1 Score: 108 bits (270), Expect = 2.480e-24
Identity = 62/211 (29.38%), Postives = 107/211 (50.71%), Query Frame = 0
Query:  140 SIFTALQTRGWIGCERPFHLVCKGVYRAIKATNAIRVVDIGCERDAAWLPHIVKKLREEFRMVKLTC-------IGGKSSGFDDIDVE--YVKMNVF--EDRFPNETDMLVAYKLVEQETLITAMKFLKNVKRSESVQTLVMETFPNSDNSIQD-------------EKLKINTAIAPFWFPTPVYQYLNAEENEEQQEMKIVAVAVDQLF 326
            S++T  Q +GW GC+RP+ + CKGVYR+IK  +A+ V+D+ C  +A +LP +   LR EFR ++  C       +    + +  +D +  ++  + F  +  +P   D+++A      ++LI +M+  + +  S + + +V + FP+ DN                  K +IN    PF FP   Y Y NA E    +  +I+A+AV  LF
Sbjct:    7 SVYTVRQPKGWWGCDRPYWVACKGVYRSIKRLDAVAVMDVNCLANADYLPVVFAHLRLEFRYIRFVCAERDADRLAAAQAKYRSVDAKMSFITFDPFAADAAYPPRLDVVLAIGAFAGQSLIRSMRLFRALHTSGAARYVVFDNFPSLDNGPSVGAGGGRVAGVGGVNKGRINVYKGPFMFPPAKYMYENATEVYGTEHSQILALAVADLF 217          
The following BLAST results are available for this feature:
BLAST of Gcaud2616.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J3G8_9FLOR1.010e-12866.42Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P1A0_PORUM2.480e-2429.38Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..347
NoneNo IPR availableTMHMMTMhelixcoord: 19..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2616_length_5163_cov_4.087737contigNODE_2616_length_5163_cov_4.087737:1337..2380 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2616.t1Gcaud2616.t1Gracilaria caudata M_176_S67 malemRNANODE_2616_length_5163_cov_4.087737 1337..2380 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2616.t1 ID=Gcaud2616.t1|Name=Gcaud2616.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=348bp
MGRRKHGRRHRRRKGHTSITTWFPTLLFAISITIFFQTQRRTKLRRSSRS
FTPSSVSTQPVEWFAQPVSVESAAQVVDTIEDPIPEGPLPFPRIQQNELT
TNVHAGSSWIPSFASTMLPTLPSHWLIDNVPQTMVRERASIFTALQTRGW
IGCERPFHLVCKGVYRAIKATNAIRVVDIGCERDAAWLPHIVKKLREEFR
MVKLTCIGGKSSGFDDIDVEYVKMNVFEDRFPNETDMLVAYKLVEQETLI
TAMKFLKNVKRSESVQTLVMETFPNSDNSIQDEKLKINTAIAPFWFPTPV
YQYLNAEENEEQQEMKIVAVAVDQLFTDRNTPSMMELVDPRKRVVQE*
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