Gcaud2616.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2616.t1
Unique Name	Gcaud2616.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2616_length_5163_cov_4.087737	contig	NODE_2616_length_5163_cov_4.087737:1337..2380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2616	Gcaud2616	Gracilaria caudata M_176_S67 male	gene	NODE_2616_length_5163_cov_4.087737 1337..2380 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2616.t1.start1	Gcaud2616.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2616_length_5163_cov_4.087737 1337..1339 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2616.t1.CDS1	Gcaud2616.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2616_length_5163_cov_4.087737 1337..2380 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2616.t1.exon1	Gcaud2616.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2616_length_5163_cov_4.087737 1337..2380 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2616.t1.stop1	Gcaud2616.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2616_length_5163_cov_4.087737 2378..2380 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2616.t1	Gcaud2616.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2616_length_5163_cov_4.087737 1337..2380 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2616_length_5163_cov_4.087737:1337..2380+
coding sequence from alignment at NODE_2616_length_5163_cov_4.087737:1337..2380+

mRNA sequence

>Gcaud2616.t1 ID=Gcaud2616.t1|Name=Gcaud2616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp
MGRRKHGRRHRRRKGHTSITTWFPTLLFAISITIFFQTQRRTKLRRSSRS
FTPSSVSTQPVEWFAQPVSVESAAQVVDTIEDPIPEGPLPFPRIQQNELT
TNVHAGSSWIPSFASTMLPTLPSHWLIDNVPQTMVRERASIFTALQTRGW
IGCERPFHLVCKGVYRAIKATNAIRVVDIGCERDAAWLPHIVKKLREEFR
MVKLTCIGGKSSGFDDIDVEYVKMNVFEDRFPNETDMLVAYKLVEQETLI
TAMKFLKNVKRSESVQTLVMETFPNSDNSIQDEKLKINTAIAPFWFPTPV
YQYLNAEENEEQQEMKIVAVAVDQLFTDRNTPSMMELVDPRKRVVQE*

spliced messenger RNA

>Gcaud2616.t1 ID=Gcaud2616.t1|Name=Gcaud2616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:1337..2380+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGAAGAAAGCACGGACGTCGACATCGAAGGCGTAAAGGACACAC
GAGTATCACAACGTGGTTCCCAACTCTGCTATTCGCAATAAGCATTACCA
TCTTTTTCCAGACGCAGCGAAGGACAAAGCTCCGTCGGTCGTCACGCTCA
TTCACTCCATCTTCAGTGTCGACTCAACCGGTGGAATGGTTCGCGCAGCC
CGTTAGTGTAGAGAGCGCTGCACAGGTAGTAGATACAATCGAAGACCCAA
TTCCAGAAGGACCGTTACCATTTCCGCGAATTCAGCAGAATGAACTCACA
ACTAACGTGCACGCAGGATCTTCTTGGATACCATCGTTTGCGAGTACCAT
GCTCCCGACATTACCTTCACATTGGTTGATTGATAACGTGCCACAAACGA
TGGTACGGGAGAGAGCGTCTATTTTTACGGCGTTGCAGACGCGTGGGTGG
ATAGGATGCGAACGACCTTTTCATCTGGTGTGCAAGGGTGTTTACAGGGC
TATCAAGGCGACCAACGCCATTCGTGTGGTTGATATCGGTTGCGAACGTG
ATGCAGCTTGGTTACCGCATATCGTAAAAAAGCTAAGGGAGGAATTCAGA
ATGGTGAAACTGACTTGTATCGGAGGAAAAAGCAGTGGTTTCGACGATAT
TGACGTGGAATATGTGAAGATGAATGTATTTGAAGATCGATTCCCGAATG
AAACAGATATGTTGGTGGCGTATAAACTTGTGGAACAAGAAACGCTGATC
ACTGCGATGAAGTTTCTGAAGAACGTTAAGAGAAGTGAATCGGTACAGAC
TCTGGTGATGGAAACATTCCCAAACAGTGATAACTCGATCCAAGATGAGA
AGCTAAAGATCAACACTGCAATCGCACCGTTTTGGTTTCCAACGCCTGTA
TATCAATACCTCAACGCAGAGGAAAATGAGGAACAACAAGAAATGAAAAT
CGTGGCAGTGGCAGTGGATCAGCTGTTCACGGATCGCAACACGCCAAGCA
TGATGGAGCTAGTGGACCCGAGAAAGCGTGTAGTTCAAGAATAA

protein sequence of Gcaud2616.t1

>Gcaud2616.t1 ID=Gcaud2616.t1|Name=Gcaud2616.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=348bp
MGRRKHGRRHRRRKGHTSITTWFPTLLFAISITIFFQTQRRTKLRRSSRS
FTPSSVSTQPVEWFAQPVSVESAAQVVDTIEDPIPEGPLPFPRIQQNELT
TNVHAGSSWIPSFASTMLPTLPSHWLIDNVPQTMVRERASIFTALQTRGW
IGCERPFHLVCKGVYRAIKATNAIRVVDIGCERDAAWLPHIVKKLREEFR
MVKLTCIGGKSSGFDDIDVEYVKMNVFEDRFPNETDMLVAYKLVEQETLI
TAMKFLKNVKRSESVQTLVMETFPNSDNSIQDEKLKINTAIAPFWFPTPV
YQYLNAEENEEQQEMKIVAVAVDQLFTDRNTPSMMELVDPRKRVVQE*

mRNA from alignment at NODE_2616_length_5163_cov_4.087737:1337..2380+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2616.t1 ID=Gcaud2616.t1|Name=Gcaud2616.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:1337..2380+ (Gracilaria caudata M_176_S67 male)
ATGGGCCGAAGAAAGCACGGACGTCGACATCGAAGGCGTAAAGGACACAC
GAGTATCACAACGTGGTTCCCAACTCTGCTATTCGCAATAAGCATTACCA
TCTTTTTCCAGACGCAGCGAAGGACAAAGCTCCGTCGGTCGTCACGCTCA
TTCACTCCATCTTCAGTGTCGACTCAACCGGTGGAATGGTTCGCGCAGCC
CGTTAGTGTAGAGAGCGCTGCACAGGTAGTAGATACAATCGAAGACCCAA
TTCCAGAAGGACCGTTACCATTTCCGCGAATTCAGCAGAATGAACTCACA
ACTAACGTGCACGCAGGATCTTCTTGGATACCATCGTTTGCGAGTACCAT
GCTCCCGACATTACCTTCACATTGGTTGATTGATAACGTGCCACAAACGA
TGGTACGGGAGAGAGCGTCTATTTTTACGGCGTTGCAGACGCGTGGGTGG
ATAGGATGCGAACGACCTTTTCATCTGGTGTGCAAGGGTGTTTACAGGGC
TATCAAGGCGACCAACGCCATTCGTGTGGTTGATATCGGTTGCGAACGTG
ATGCAGCTTGGTTACCGCATATCGTAAAAAAGCTAAGGGAGGAATTCAGA
ATGGTGAAACTGACTTGTATCGGAGGAAAAAGCAGTGGTTTCGACGATAT
TGACGTGGAATATGTGAAGATGAATGTATTTGAAGATCGATTCCCGAATG
AAACAGATATGTTGGTGGCGTATAAACTTGTGGAACAAGAAACGCTGATC
ACTGCGATGAAGTTTCTGAAGAACGTTAAGAGAAGTGAATCGGTACAGAC
TCTGGTGATGGAAACATTCCCAAACAGTGATAACTCGATCCAAGATGAGA
AGCTAAAGATCAACACTGCAATCGCACCGTTTTGGTTTCCAACGCCTGTA
TATCAATACCTCAACGCAGAGGAAAATGAGGAACAACAAGAAATGAAAAT
CGTGGCAGTGGCAGTGGATCAGCTGTTCACGGATCGCAACACGCCAAGCA
TGATGGAGCTAGTGGACCCGAGAAAGCGTGTAGTTCAAGAATAA

Coding sequence (CDS) from alignment at NODE_2616_length_5163_cov_4.087737:1337..2380+

>Gcaud2616.t1 ID=Gcaud2616.t1|Name=Gcaud2616.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1044bp|location=Sequence derived from alignment at NODE_2616_length_5163_cov_4.087737:1337..2380+ (Gracilaria caudata M_176_S67 male)
ATGGGCCGAAGAAAGCACGGACGTCGACATCGAAGGCGTAAAGGACACAC
GAGTATCACAACGTGGTTCCCAACTCTGCTATTCGCAATAAGCATTACCA
TCTTTTTCCAGACGCAGCGAAGGACAAAGCTCCGTCGGTCGTCACGCTCA
TTCACTCCATCTTCAGTGTCGACTCAACCGGTGGAATGGTTCGCGCAGCC
CGTTAGTGTAGAGAGCGCTGCACAGGTAGTAGATACAATCGAAGACCCAA
TTCCAGAAGGACCGTTACCATTTCCGCGAATTCAGCAGAATGAACTCACA
ACTAACGTGCACGCAGGATCTTCTTGGATACCATCGTTTGCGAGTACCAT
GCTCCCGACATTACCTTCACATTGGTTGATTGATAACGTGCCACAAACGA
TGGTACGGGAGAGAGCGTCTATTTTTACGGCGTTGCAGACGCGTGGGTGG
ATAGGATGCGAACGACCTTTTCATCTGGTGTGCAAGGGTGTTTACAGGGC
TATCAAGGCGACCAACGCCATTCGTGTGGTTGATATCGGTTGCGAACGTG
ATGCAGCTTGGTTACCGCATATCGTAAAAAAGCTAAGGGAGGAATTCAGA
ATGGTGAAACTGACTTGTATCGGAGGAAAAAGCAGTGGTTTCGACGATAT
TGACGTGGAATATGTGAAGATGAATGTATTTGAAGATCGATTCCCGAATG
AAACAGATATGTTGGTGGCGTATAAACTTGTGGAACAAGAAACGCTGATC
ACTGCGATGAAGTTTCTGAAGAACGTTAAGAGAAGTGAATCGGTACAGAC
TCTGGTGATGGAAACATTCCCAAACAGTGATAACTCGATCCAAGATGAGA
AGCTAAAGATCAACACTGCAATCGCACCGTTTTGGTTTCCAACGCCTGTA
TATCAATACCTCAACGCAGAGGAAAATGAGGAACAACAAGAAATGAAAAT
CGTGGCAGTGGCAGTGGATCAGCTGTTCACGGATCGCAACACGCCAAGCA
TGATGGAGCTAGTGGACCCGAGAAAGCGTGTAGTTCAAGAATAA