Gcaud8412.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8412.t1
Unique Name	Gcaud8412.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	424

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2605_length_5185_cov_7.983903	contig	NODE_2605_length_5185_cov_7.983903:2917..4188 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8412	Gcaud8412	Gracilaria caudata M_176_S67 male	gene	NODE_2605_length_5185_cov_7.983903 2917..4188 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8412.t1.stop1	Gcaud8412.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2605_length_5185_cov_7.983903 2917..2919 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8412.t1.CDS1	Gcaud8412.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2605_length_5185_cov_7.983903 2917..4188 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8412.t1.exon1	Gcaud8412.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2605_length_5185_cov_7.983903 2917..4188 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8412.t1.start1	Gcaud8412.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2605_length_5185_cov_7.983903 4186..4188 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8412.t1	Gcaud8412.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2605_length_5185_cov_7.983903 2917..4188 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2605_length_5185_cov_7.983903:2917..4188-
coding sequence from alignment at NODE_2605_length_5185_cov_7.983903:2917..4188-

mRNA sequence

>Gcaud8412.t1 ID=Gcaud8412.t1|Name=Gcaud8412.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=424bp
MDSRLHSGPPLYDSIPVRPEAAHVSLRGGVRDRLSSFARSSSTPLVIKAV
AALSVVIASVFVLSSPCLSCDLLTFKHRIFNLAPIRFLVAPTYAHQALSY
ARSYDPHLLGSYERHPSKALRHFSKPSASYLERQLPVSQQEDPFVIEEFI
GTRKCSGLRRCRVRLIVRKDEYGVTVQAGYNISSWKATPVDVDDVTQERI
KAITTAEWYRWAFALVSRVSGELLELDCPISIIDVIHAFAETSIPASHCP
STDDPRCHQLITIAKCPHEVEPPPPTPIPKDSCELAFDECEFTFYGESGL
ATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHPITHF
GSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQL
KDPYSNLNHVPRSENKCVVFRTE*

spliced messenger RNA

>Gcaud8412.t1 ID=Gcaud8412.t1|Name=Gcaud8412.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_2605_length_5185_cov_7.983903:2917..4188- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCAGGCTCCACTCTGGTCCTCCTTTGTACGATTCGATTCCGGT
CCGTCCCGAAGCCGCCCACGTGTCTCTTCGCGGTGGTGTACGCGATCGCT
TGAGCTCATTTGCCCGTTCGTCCTCAACTCCGCTTGTGATTAAGGCCGTT
GCAGCGCTCTCCGTTGTTATTGCCTCTGTGTTTGTTCTTTCGAGTCCATG
CCTCTCTTGTGATCTGCTCACCTTCAAGCACCGTATCTTCAACTTGGCTC
CTATCCGCTTTTTGGTTGCACCGACATACGCACACCAAGCCCTCTCCTAC
GCCAGATCTTACGATCCCCATCTGCTTGGCTCGTACGAACGCCACCCTAG
TAAGGCCCTTCGTCACTTCTCTAAACCTTCCGCATCATACTTGGAACGAC
AACTCCCTGTGTCGCAGCAAGAAGATCCTTTTGTCATTGAAGAGTTCATA
GGCACACGCAAATGTTCTGGTCTCAGGAGGTGTCGTGTACGTTTGATTGT
GAGAAAGGACGAATACGGGGTGACCGTTCAAGCTGGCTACAACATCTCCA
GTTGGAAGGCAACTCCGGTTGACGTTGACGACGTCACGCAGGAAAGGATA
AAGGCCATCACGACGGCGGAGTGGTACCGTTGGGCGTTCGCACTGGTGAG
TCGTGTAAGTGGGGAACTATTGGAATTGGATTGCCCTATCTCAATCATAG
ATGTGATCCATGCATTTGCAGAAACGTCAATCCCCGCCTCCCATTGTCCG
AGCACAGATGACCCTCGTTGTCATCAATTGATCACCATCGCGAAGTGTCC
CCATGAAGTTGAACCTCCACCTCCAACTCCGATTCCGAAGGACAGCTGCG
AGCTGGCTTTCGACGAATGCGAGTTCACATTTTACGGTGAGAGCGGCTTG
GCCACGTTCAGTGTGGACGGACCACCGGACAAGAGCTTCACGCCGGTGAT
TGTTGCGAAGGACCCCGACGTACATCTCGGTACCTTGAACTCAAACAACG
TGGTTCCGGAGTTCATCGACGATTCTGGCGCGCACCCCATCACCCACTTC
GGATCTCAGCGCTTCGCTCCAACTCAGTTCAAGCCGTATTACATATGGCA
GCAACAAGGCTCCGGAATCGGTCATCAAACGTTCCACGCTGACCAGCAGG
AGCTCTCCAAGGGCAGGTGCATCCGAATTTTCTTCACGCATATCCAGTTG
AAGGATCCTTATTCCAATCTGAACCATGTGCCGAGATCTGAGAACAAGTG
TGTGGTGTTCCGCACCGAGTAG

protein sequence of Gcaud8412.t1

>Gcaud8412.t1 ID=Gcaud8412.t1|Name=Gcaud8412.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=424bp
MDSRLHSGPPLYDSIPVRPEAAHVSLRGGVRDRLSSFARSSSTPLVIKAV
AALSVVIASVFVLSSPCLSCDLLTFKHRIFNLAPIRFLVAPTYAHQALSY
ARSYDPHLLGSYERHPSKALRHFSKPSASYLERQLPVSQQEDPFVIEEFI
GTRKCSGLRRCRVRLIVRKDEYGVTVQAGYNISSWKATPVDVDDVTQERI
KAITTAEWYRWAFALVSRVSGELLELDCPISIIDVIHAFAETSIPASHCP
STDDPRCHQLITIAKCPHEVEPPPPTPIPKDSCELAFDECEFTFYGESGL
ATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHPITHF
GSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQL
KDPYSNLNHVPRSENKCVVFRTE*

mRNA from alignment at NODE_2605_length_5185_cov_7.983903:2917..4188-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8412.t1 ID=Gcaud8412.t1|Name=Gcaud8412.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_2605_length_5185_cov_7.983903:2917..4188- (Gracilaria caudata M_176_S67 male)
ATGGATTCCAGGCTCCACTCTGGTCCTCCTTTGTACGATTCGATTCCGGT
CCGTCCCGAAGCCGCCCACGTGTCTCTTCGCGGTGGTGTACGCGATCGCT
TGAGCTCATTTGCCCGTTCGTCCTCAACTCCGCTTGTGATTAAGGCCGTT
GCAGCGCTCTCCGTTGTTATTGCCTCTGTGTTTGTTCTTTCGAGTCCATG
CCTCTCTTGTGATCTGCTCACCTTCAAGCACCGTATCTTCAACTTGGCTC
CTATCCGCTTTTTGGTTGCACCGACATACGCACACCAAGCCCTCTCCTAC
GCCAGATCTTACGATCCCCATCTGCTTGGCTCGTACGAACGCCACCCTAG
TAAGGCCCTTCGTCACTTCTCTAAACCTTCCGCATCATACTTGGAACGAC
AACTCCCTGTGTCGCAGCAAGAAGATCCTTTTGTCATTGAAGAGTTCATA
GGCACACGCAAATGTTCTGGTCTCAGGAGGTGTCGTGTACGTTTGATTGT
GAGAAAGGACGAATACGGGGTGACCGTTCAAGCTGGCTACAACATCTCCA
GTTGGAAGGCAACTCCGGTTGACGTTGACGACGTCACGCAGGAAAGGATA
AAGGCCATCACGACGGCGGAGTGGTACCGTTGGGCGTTCGCACTGGTGAG
TCGTGTAAGTGGGGAACTATTGGAATTGGATTGCCCTATCTCAATCATAG
ATGTGATCCATGCATTTGCAGAAACGTCAATCCCCGCCTCCCATTGTCCG
AGCACAGATGACCCTCGTTGTCATCAATTGATCACCATCGCGAAGTGTCC
CCATGAAGTTGAACCTCCACCTCCAACTCCGATTCCGAAGGACAGCTGCG
AGCTGGCTTTCGACGAATGCGAGTTCACATTTTACGGTGAGAGCGGCTTG
GCCACGTTCAGTGTGGACGGACCACCGGACAAGAGCTTCACGCCGGTGAT
TGTTGCGAAGGACCCCGACGTACATCTCGGTACCTTGAACTCAAACAACG
TGGTTCCGGAGTTCATCGACGATTCTGGCGCGCACCCCATCACCCACTTC
GGATCTCAGCGCTTCGCTCCAACTCAGTTCAAGCCGTATTACATATGGCA
GCAACAAGGCTCCGGAATCGGTCATCAAACGTTCCACGCTGACCAGCAGG
AGCTCTCCAAGGGCAGGTGCATCCGAATTTTCTTCACGCATATCCAGTTG
AAGGATCCTTATTCCAATCTGAACCATGTGCCGAGATCTGAGAACAAGTG
TGTGGTGTTCCGCACCGAGTAG

Coding sequence (CDS) from alignment at NODE_2605_length_5185_cov_7.983903:2917..4188-

>Gcaud8412.t1 ID=Gcaud8412.t1|Name=Gcaud8412.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1272bp|location=Sequence derived from alignment at NODE_2605_length_5185_cov_7.983903:2917..4188- (Gracilaria caudata M_176_S67 male)
ATGGATTCCAGGCTCCACTCTGGTCCTCCTTTGTACGATTCGATTCCGGT
CCGTCCCGAAGCCGCCCACGTGTCTCTTCGCGGTGGTGTACGCGATCGCT
TGAGCTCATTTGCCCGTTCGTCCTCAACTCCGCTTGTGATTAAGGCCGTT
GCAGCGCTCTCCGTTGTTATTGCCTCTGTGTTTGTTCTTTCGAGTCCATG
CCTCTCTTGTGATCTGCTCACCTTCAAGCACCGTATCTTCAACTTGGCTC
CTATCCGCTTTTTGGTTGCACCGACATACGCACACCAAGCCCTCTCCTAC
GCCAGATCTTACGATCCCCATCTGCTTGGCTCGTACGAACGCCACCCTAG
TAAGGCCCTTCGTCACTTCTCTAAACCTTCCGCATCATACTTGGAACGAC
AACTCCCTGTGTCGCAGCAAGAAGATCCTTTTGTCATTGAAGAGTTCATA
GGCACACGCAAATGTTCTGGTCTCAGGAGGTGTCGTGTACGTTTGATTGT
GAGAAAGGACGAATACGGGGTGACCGTTCAAGCTGGCTACAACATCTCCA
GTTGGAAGGCAACTCCGGTTGACGTTGACGACGTCACGCAGGAAAGGATA
AAGGCCATCACGACGGCGGAGTGGTACCGTTGGGCGTTCGCACTGGTGAG
TCGTGTAAGTGGGGAACTATTGGAATTGGATTGCCCTATCTCAATCATAG
ATGTGATCCATGCATTTGCAGAAACGTCAATCCCCGCCTCCCATTGTCCG
AGCACAGATGACCCTCGTTGTCATCAATTGATCACCATCGCGAAGTGTCC
CCATGAAGTTGAACCTCCACCTCCAACTCCGATTCCGAAGGACAGCTGCG
AGCTGGCTTTCGACGAATGCGAGTTCACATTTTACGGTGAGAGCGGCTTG
GCCACGTTCAGTGTGGACGGACCACCGGACAAGAGCTTCACGCCGGTGAT
TGTTGCGAAGGACCCCGACGTACATCTCGGTACCTTGAACTCAAACAACG
TGGTTCCGGAGTTCATCGACGATTCTGGCGCGCACCCCATCACCCACTTC
GGATCTCAGCGCTTCGCTCCAACTCAGTTCAAGCCGTATTACATATGGCA
GCAACAAGGCTCCGGAATCGGTCATCAAACGTTCCACGCTGACCAGCAGG
AGCTCTCCAAGGGCAGGTGCATCCGAATTTTCTTCACGCATATCCAGTTG
AAGGATCCTTATTCCAATCTGAACCATGTGCCGAGATCTGAGAACAAGTG
TGTGGTGTTCCGCACCGAGTAG