Gcaud8412.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8412.t1
Unique NameGcaud8412.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length424
Homology
BLAST of Gcaud8412.t1 vs. uniprot
Match: A0A2V3IGK2_9FLOR (Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGK2_9FLOR)

HSP 1 Score: 199 bits (507), Expect = 9.320e-57
Identity = 93/143 (65.03%), Postives = 113/143 (79.02%), Query Frame = 0
Query:  283 CELAFDECEFTFYGESGLATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHPITHFGSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQ--LKDPYSNLNHVPRSENKCVVFRTE 423
            C  AFDECEFTF G++GL+TFS+ G PD+SFTP IV+KD  V LG LNSNN+VPEFI+D+G  PIT+FGSQRF PT FKPY +   QGSGIGHQTFH +Q++++K RCIR++FTH Q    +   N N VPRSENKCVVFRT+
Sbjct:  211 CSKAFDECEFTFRGKTGLSTFSIAGRPDRSFTPRIVSKDASVRLGVLNSNNIVPEFIEDNGVFPITNFGSQRFTPTHFKPYTLMNGQGSGIGHQTFHGNQKQVAKDRCIRVYFTHFQEIRNNKLINRNDVPRSENKCVVFRTQ 353          
BLAST of Gcaud8412.t1 vs. uniprot
Match: A0A2V3IQI6_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQI6_9FLOR)

HSP 1 Score: 167 bits (423), Expect = 2.410e-44
Identity = 82/149 (55.03%), Postives = 104/149 (69.80%), Query Frame = 0
Query:  280 KDSCELAFDECEFTFYGESGL--ATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHPITHFGSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQLKDPYS---NLNHVPRSENKCVVFRTE 423
            K  CE A+D+C F F G +G   A FS+ G PDKSFTP +V K     LGTLN+NNVVPEFI+ +   PIT FGSQRF PT FKPY+I +++GSG+GHQTF  +Q E++  +C+R++FT  Q   P     N N+VP SENKCVVFRT+
Sbjct:  211 KTECEKAYDKCLFKFSGVNGFNNAIFSIAGEPDKSFTPRVVPKATTYSLGTLNTNNVVPEFIEGNQGRPITEFGSQRFTPTHFKPYWISEERGSGVGHQTFQGNQLEVANDKCVRVYFTSFQEVPPNGQVVNRNNVPTSENKCVVFRTK 359          
BLAST of Gcaud8412.t1 vs. uniprot
Match: A0A2V3IGH1_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGH1_9FLOR)

HSP 1 Score: 154 bits (388), Expect = 2.890e-39
Identity = 77/149 (51.68%), Postives = 101/149 (67.79%), Query Frame = 0
Query:  280 KDSCELAFDECEFTFYG--ESGLATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHPITHFGSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQ---LKDPYSNLNHVPRSENKCVVFRTE 423
            K  CE A+++C F F G  +   A FS+ G PDKS TP +V K     LGTLN+NNVVPEFI+++    IT FGSQRF PT FKPY+I +++GSG+GHQTF  +Q EL+  +C+R++FT  Q         N N+VP SE+KCVVFRT+
Sbjct:  212 KTECEKAYNKCLFKFSGIDDFNNAIFSIAGEPDKSMTPQVVPKATTYSLGTLNTNNVVPEFIEENQVSLITEFGSQRFTPTHFKPYWISEERGSGVGHQTFQGNQLELANDKCVRLYFTSFQEISQNGQVVNRNNVPTSEHKCVVFRTK 360          
BLAST of Gcaud8412.t1 vs. uniprot
Match: A0A2V3IP66_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP66_9FLOR)

HSP 1 Score: 135 bits (339), Expect = 6.410e-31
Identity = 73/158 (46.20%), Postives = 106/158 (67.09%), Query Frame = 0
Query:  273 PPPTPIPK-DSCELAFDECEFTFYGESGLATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHP-ITHF-GSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQLKD---PYSNLNHVP--RSENKCVVFRT 422
            P PTP P  D C+ A+D C F F  E+ +  FSVDGP + +F+PVI +++ + +LG LNSNN+  E  +  G +  IT    SQ F+ TQFKP+ +   +GSGIGH+TF ADQ+E+ +GRC+R+FF+H QL +   P++ + +V   R +NKCVVF+T
Sbjct:  444 PTPTPEPVVDKCQQAYDLCGFYFGNETDVPVFSVDGPDNVAFSPVIESRNDNENLGVLNSNNLEVEIFEGDGNYVGITSLPASQTFSRTQFKPFSLSNTKGSGIGHETFQADQREVIRGRCVRVFFSHFQLLELTPPFNVVGNVVAGREDNKCVVFKT 601          
BLAST of Gcaud8412.t1 vs. uniprot
Match: A0A2V3J5W6_9FLOR (Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5W6_9FLOR)

HSP 1 Score: 130 bits (326), Expect = 1.950e-29
Identity = 69/158 (43.67%), Postives = 99/158 (62.66%), Query Frame = 0
Query:  274 PPTPIPKDSCELAFDECEFTFYGESGLATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHPITHF--GSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQLKDP------YSNLNHVPRSENKCVVFRTE 423
            PPT    D+CE A+ +C+F F+    + TF++ G PDK FTP IV++ P V +G LN+N ++PEFI+  G+  +         FAPTQFKP  I    GSG+G+QTF  +Q   ++ RC+R+FFT  QL +P       +N+N   R++NKCVVFRT+
Sbjct:  372 PPT---LDACEQAYQDCDFAFFDTPVVPTFTLGGNPDKPFTPRIVSRIPGVVVGVLNTNGIIPEFIESDGSVDLITSTPAIPMFAPTQFKPLSIPDDIGSGVGYQTFQGNQLVEARNRCVRLFFTSFQLLEPTPPFSVIANIN-ADRTDNKCVVFRTD 525          
BLAST of Gcaud8412.t1 vs. uniprot
Match: A0A2V3ITP9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITP9_9FLOR)

HSP 1 Score: 98.6 bits (244), Expect = 7.350e-19
Identity = 75/268 (27.99%), Postives = 137/268 (51.12%), Query Frame = 0
Query:   12 YDSIPVRPEAAHVS----LRGGVRDRLSS-FARSSSTPLVIKAVAALSVVIASVFVLSSPCLSCDLLTFKHRIFNLAPIRFLVAPTYAHQALSYARSYDPHLLGSYERH--PSKALRHF-SKPSASYLERQLPVSQQEDPFVIEEFIGTRKCSGLRRCRVRLIVRKDEYGVTVQAGYNISSWKATPVDVDDVTQERIKAITTAEWYRWAFALVSRVSGELLELDCPISIIDVIHAFAETSIPASHCPSTDDPRCHQLITIAKCPHEVE 271
            Y+SIP  P   +V+    L+ G R++ +  F+  S    ++  +   + ++A +F++++  L  +L  F +    L P             LS +R+ +P    +   H    +   H+ ++ S S L   +  +  E   V +E + TR CS    CR RL+V K++ G+TVQAGY I + ++  + +   T++R+KA+T  E  +WA  L+ ++  +L E+DC +S+  +  A  ET    + C +TDD  C +L+T+ +C  +VE
Sbjct:    6 YNSIPQNPAPGNVTAASPLKHGSRNQANGRFSFPSVGRKLLSLLTIAAALVAVIFLVNNYVL--ELPRFSYHESRLVP------------RLSTSRNSNPFHFDAVHSHLYSDRKFSHWKARSSVSLLHSAIRSNICEVDSVTQEAVPTRDCSVGLWCRARLVVTKNDAGITVQAGYYIYTKRSKTMPITAQTKKRVKAVTPNEATKWAETLLEQLGTKLGEVDCNVSVSMIADAIMETKDVVASCSNTDDSLCSELVTLRECSCQVE 259          
The following BLAST results are available for this feature:
BLAST of Gcaud8412.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IGK2_9FLOR9.320e-5765.03Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariop... [more]
A0A2V3IQI6_9FLOR2.410e-4455.03VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IGH1_9FLOR2.890e-3951.68VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IP66_9FLOR6.410e-3146.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5W6_9FLOR1.950e-2943.67Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis... [more]
A0A2V3ITP9_9FLOR7.350e-1927.99Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..423
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2605_length_5185_cov_7.983903contigNODE_2605_length_5185_cov_7.983903:2917..4188 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8412.t1Gcaud8412.t1Gracilaria caudata M_176_S67 malemRNANODE_2605_length_5185_cov_7.983903 2917..4188 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8412.t1 ID=Gcaud8412.t1|Name=Gcaud8412.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=424bp
MDSRLHSGPPLYDSIPVRPEAAHVSLRGGVRDRLSSFARSSSTPLVIKAV
AALSVVIASVFVLSSPCLSCDLLTFKHRIFNLAPIRFLVAPTYAHQALSY
ARSYDPHLLGSYERHPSKALRHFSKPSASYLERQLPVSQQEDPFVIEEFI
GTRKCSGLRRCRVRLIVRKDEYGVTVQAGYNISSWKATPVDVDDVTQERI
KAITTAEWYRWAFALVSRVSGELLELDCPISIIDVIHAFAETSIPASHCP
STDDPRCHQLITIAKCPHEVEPPPPTPIPKDSCELAFDECEFTFYGESGL
ATFSVDGPPDKSFTPVIVAKDPDVHLGTLNSNNVVPEFIDDSGAHPITHF
GSQRFAPTQFKPYYIWQQQGSGIGHQTFHADQQELSKGRCIRIFFTHIQL
KDPYSNLNHVPRSENKCVVFRTE*
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