Gcaud1820.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1820.t1
Unique NameGcaud1820.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length183
Homology
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A2V3IJV1_9FLOR (DNA polymerase I A, chloroplastic/mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJV1_9FLOR)

HSP 1 Score: 330 bits (845), Expect = 3.670e-106
Identity = 159/182 (87.36%), Postives = 172/182 (94.51%), Query Frame = 0
Query:    1 MFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK 182
            MFP ERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVR WQR+CK+FL+ H FVETI GRRRHLPDI S + HER+HAQRAAINAPLQGSAADLVMGAMLKLH+DRVLR LGW +ILQVHDEIILEGPEESADIALPIVV+KMKNP+D++LRVDLTVDAKCA+SWY+AK
Sbjct:  590 MFPVERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRQWQRQCKRFLRDHQFVETITGRRRHLPDIASDRMHERYHAQRAAINAPLQGSAADLVMGAMLKLHQDRVLRALGWNIILQVHDEIILEGPEESADIALPIVVEKMKNPLDIELRVDLTVDAKCAQSWYDAK 771          
BLAST of Gcaud1820.t1 vs. uniprot
Match: R7QQ52_CHOCR (DNA polymerase type I with a mitochondrial signal peptide n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ52_CHOCR)

HSP 1 Score: 275 bits (704), Expect = 5.550e-85
Identity = 134/181 (74.03%), Postives = 158/181 (87.29%), Query Frame = 0
Query:    2 FPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK 182
            F +ERRKAKTLNFSIAYGKT+ GLARDWN S +EA +TL+LWYKERQEV  WQ +CK F++++ +VETILGRRRHLPD+ +    +R HA+RAAINAPLQGSAADLVM AM+KLH++RVLR LGWK+ILQVHDEIILEGP+ESAD+ALPI+V +MK PV   LRVDLTVDAKCAKSW+EAK
Sbjct:  631 FSSERRKAKTLNFSIAYGKTVKGLARDWNVSTKEARDTLDLWYKERQEVLQWQYDCKSFVRENKYVETILGRRRHLPDVDNHIFSKRNHAERAAINAPLQGSAADLVMAAMVKLHKNRVLRGLGWKIILQVHDEIILEGPDESADVALPIIVKEMKTPVGAPLRVDLTVDAKCAKSWFEAK 811          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A7J7IMX3_9RHOD (POLAc domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMX3_9RHOD)

HSP 1 Score: 218 bits (556), Expect = 1.100e-67
Identity = 109/182 (59.89%), Postives = 137/182 (75.27%), Query Frame = 0
Query:    1 MFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK 182
            ++PTERR+AKTLNFSIAYGKT  GLARDW TS +EA ET++ WY++R EVR WQ    +F + H +V+T+LGRRR LP+I +       HA+RAAIN PLQGSAAD+VM AML++HR+  L  LGW++ILQVHDEIILEGP+E+ D A  IV+  M+NP    LRV+L V A  AK+WY AK
Sbjct:  157 VYPTERRRAKTLNFSIAYGKTPAGLARDWGTSLKEARETVDAWYRDRPEVRAWQERAIQFARSHGYVKTLLGRRRPLPEINAQNATVARHAERAAINTPLQGSAADVVMRAMLQIHRNERLAQLGWRMILQVHDEIILEGPQETVDEAEEIVIRLMRNPFREPLRVELAVSAAHAKTWYRAK 338          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A2K3PEX3_TRIPR (DNA polymerase (Fragment) n=3 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PEX3_TRIPR)

HSP 1 Score: 203 bits (516), Expect = 1.370e-62
Identity = 102/183 (55.74%), Postives = 135/183 (73.77%), Query Frame = 0
Query:    2 FPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVD--LRVDLTVDAKCAKSWYEAK 182
            F +ERRKAK LNFSIAYGKT  GL++DW  S +EA  T++LWY +R+EV  WQ++ KK   +H +V T+LGR R   D+     + + H +RAAIN P+QGSAAD+ M AML++ +++ L+ LGWK++LQVHDE+ILEGP ESA++A  IVVD M NP +    LRV LTVDAKCA++WY AK
Sbjct:   82 FASERRKAKMLNFSIAYGKTPQGLSKDWKVSVKEAKNTVDLWYNDRKEVLRWQQKRKKEALEHGYVSTLLGRSRRFHDVFQGHSYYKGHIERAAINTPVQGSAADVAMLAMLEISKNKQLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSNPFNGKNILRVGLTVDAKCAQNWYAAK 264          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A830CQJ5_9LAMI (DNA polymerase i b chloroplastic/mitochondrial n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CQJ5_9LAMI)

HSP 1 Score: 216 bits (550), Expect = 4.850e-62
Identity = 111/183 (60.66%), Postives = 134/183 (73.22%), Query Frame = 0
Query:    2 FPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVD--LRVDLTVDAKCAKSWYEAK 182
            F +ERRKAK LNFSIAYGKT VGLARDW  S EEA +T+NLWY +RQEV  WQ E KK  +++  V T+LGR RH P + +     R H +RAAIN P+QGSAAD+ M AML++ R+  L+ LGW++ILQVHDE+ILEGP ESA+ A  IVVD M  P D    LRVDL+VDAKCA +WY AK
Sbjct:  810 FASERRKAKMLNFSIAYGKTTVGLARDWKVSREEAQDTVNLWYSDRQEVLSWQEERKKEARQYQRVYTLLGRARHFPSLKNASSAHRNHIERAAINTPVQGSAADVAMCAMLQISRNARLKELGWRLILQVHDEVILEGPSESAEEAKAIVVDCMSKPFDGKNFLRVDLSVDAKCALNWYAAK 992          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A6J5UMN1_PRUAR (POLAc domain-containing protein n=2 Tax=Prunus TaxID=3754 RepID=A0A6J5UMN1_PRUAR)

HSP 1 Score: 207 bits (527), Expect = 8.000e-62
Identity = 103/183 (56.28%), Postives = 132/183 (72.13%), Query Frame = 0
Query:    2 FPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVD--LRVDLTVDAKCAKSWYEAK 182
            F +ERRKAK LNFSIAYGKT +GL+RDW  S ++A +T+ LWYKERQEV +WQ + K+   KH  V T+LGR R  P I      +R H +RAAIN P+QGSAAD+ M AML++  +  L  LGW+++LQVHDE+ILEGP ESA++A  IVV+ M  P +    L+VDL VDAKCA++WY AK
Sbjct:  290 FASERRKAKMLNFSIAYGKTPIGLSRDWKVSVQDAEQTVKLWYKERQEVSLWQEKRKEEATKHGHVRTLLGRERWFPSIARASRAQRGHIERAAINTPVQGSAADVAMCAMLEISNNAHLNDLGWRLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFNGKNFLKVDLAVDAKCAQNWYSAK 472          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A022R062_ERYGU (POLAc domain-containing protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R062_ERYGU)

HSP 1 Score: 214 bits (545), Expect = 1.020e-61
Identity = 109/183 (59.56%), Postives = 134/183 (73.22%), Query Frame = 0
Query:    2 FPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVD--LRVDLTVDAKCAKSWYEAK 182
            F +ERRKAK LNFSIAYGKT VGLARDW  S EEA +T+NLWY +RQEV  WQ E KK  +K+  V T+LGR RH P + +     R H +RAAIN P+QGSAAD+ M AML++ R+  L+ LGW+++LQVHDE+ILEGP ES + A  IVVD M  P D +  LRV L+VDAKCA++WY AK
Sbjct:  687 FASERRKAKMLNFSIAYGKTTVGLARDWKVSREEAQQTVNLWYSDRQEVLSWQEERKKEARKYGRVYTLLGRARHFPSLKNASSAHRNHIERAAINTPVQGSAADVAMCAMLQISRNARLKELGWRLLLQVHDEVILEGPTESGEEAKDIVVDCMSKPFDGENFLRVGLSVDAKCAQNWYSAK 869          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A4D8YYR2_SALSN (DNA polymerase I n=3 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YYR2_SALSN)

HSP 1 Score: 214 bits (545), Expect = 2.850e-61
Identity = 109/183 (59.56%), Postives = 133/183 (72.68%), Query Frame = 0
Query:    2 FPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVD--LRVDLTVDAKCAKSWYEAK 182
            F +ERRKAK LNFSIAYGKT VGLARDW  S EEA ET+NLWY +RQEV  WQ   KK    +H V T+LGR RH P + +     + H +RAAIN P+QGSAAD+ M AML++ R++ L+ LGW+++LQVHDE+ILEGP ES++ A  IVVD M  P D    LRV L+VDAKCA+SWY AK
Sbjct:  847 FGSERRKAKMLNFSIAYGKTTVGLARDWKVSREEAQETVNLWYSDRQEVLHWQTLRKKQAHNYHCVNTLLGRARHFPSLKNASSAHKAHIERAAINTPVQGSAADVAMCAMLQISRNKRLKELGWRLLLQVHDEVILEGPTESSEEAKAIVVDCMSKPFDGKNILRVGLSVDAKCAQSWYAAK 1029          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A7S1CV22_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CV22_9CHLO)

HSP 1 Score: 199 bits (507), Expect = 3.060e-61
Identity = 103/187 (55.08%), Postives = 131/187 (70.05%), Query Frame = 0
Query:    1 MFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVD-----LRVDLTVDAKCAKSWYEAK 182
            MF  ERR+AK LNFSIAYGKT  GL++DW  + +EA ET+  WY ER EVR WQ E         +V TILGRRR LPD  S     R H+ RAAIN P+QGSAAD+   AML+++ +  LR LGWK++LQVHDE+ILEGP+ESA++A  IV++ MK+P   D     LRV+L+VD+K A +WY+AK
Sbjct:   77 MFSAERRRAKVLNFSIAYGKTAHGLSKDWGVTLKEAEETVERWYAERAEVRTWQHEQHALALSEGYVCTILGRRRQLPDARSKNKALRAHSLRAAINTPIQGSAADVATAAMLRINNNPTLRQLGWKLLLQVHDEVILEGPKESAEVAQDIVIECMKSPFGDDCGPMPLRVELSVDSKYADTWYDAK 263          
BLAST of Gcaud1820.t1 vs. uniprot
Match: A0A7S2TK95_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TK95_9EUKA)

HSP 1 Score: 197 bits (500), Expect = 3.290e-61
Identity = 96/182 (52.75%), Postives = 132/182 (72.53%), Query Frame = 0
Query:    1 MFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEVRIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPLQGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALPIVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK 182
            +F  ERRKAKTLNFSIAYGKT  GLA+DW  S +EA +T++LW+ +R EV  WQ + K   +K     T++GR R LP I+  +   R H +RAAIN P+QG AAD+V+ AMLK+H +  LR LG++++LQ+HDE+I+EGPEE  D A+ I+ D M++P +  L+VDL VDAK A++WY+AK
Sbjct:    6 VFGAERRKAKTLNFSIAYGKTAFGLAKDWGVSLQEAKDTVDLWFSDRPEVLRWQDDIKATARKQKCTRTLMGRYRPLPGIMHRERARRSHFERAAINTPIQGGAADIVIMAMLKIHSNERLRELGYRLLLQIHDEVIIEGPEEHVDEAMRILRDCMEHPFENPLKVDLVVDAKAARTWYDAK 187          
The following BLAST results are available for this feature:
BLAST of Gcaud1820.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJV1_9FLOR3.670e-10687.36DNA polymerase I A, chloroplastic/mitochondrial n=... [more]
R7QQ52_CHOCR5.550e-8574.03DNA polymerase type I with a mitochondrial signal ... [more]
A0A7J7IMX3_9RHOD1.100e-6759.89POLAc domain-containing protein n=1 Tax=Cyanidioco... [more]
A0A2K3PEX3_TRIPR1.370e-6255.74DNA polymerase (Fragment) n=3 Tax=Trifolium praten... [more]
A0A830CQJ5_9LAMI4.850e-6260.66DNA polymerase i b chloroplastic/mitochondrial n=1... [more]
A0A6J5UMN1_PRUAR8.000e-6256.28POLAc domain-containing protein n=2 Tax=Prunus Tax... [more]
A0A022R062_ERYGU1.020e-6159.56POLAc domain-containing protein n=2 Tax=Erythranth... [more]
A0A4D8YYR2_SALSN2.850e-6159.56DNA polymerase I n=3 Tax=Salvia splendens TaxID=18... [more]
A0A7S1CV22_9CHLO3.060e-6155.08Hypothetical protein n=1 Tax=Picochlorum oklahomen... [more]
A0A7S2TK95_9EUKA3.290e-6152.75Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002298DNA polymerase APRINTSPR00868DNAPOLIcoord: 6..31
score: 41.57
coord: 65..76
score: 50.0
coord: 127..140
score: 56.59
coord: 97..113
score: 57.24
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 2..182
IPR001098DNA-directed DNA polymerase, family A, palm domainSMARTSM00482polaultra3coord: 1..144
e-value: 2.1E-10
score: 34.0
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 3..180
e-value: 1.8E-44
score: 152.3
NoneNo IPR availableGENE3D1.10.150.20coord: 1..70
e-value: 1.6E-8
score: 36.6
NoneNo IPR availableGENE3D3.30.70.370coord: 71..182
e-value: 1.2E-21
score: 78.7
NoneNo IPR availablePANTHERPTHR10133:SF55DNA POLYMERASE I B, MITOCHONDRIALcoord: 2..182
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 3..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_23_length_76035_cov_4.613123contigNODE_23_length_76035_cov_4.613123:30070..30618 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1820.t1Gcaud1820.t1Gracilaria caudata M_176_S67 malemRNANODE_23_length_76035_cov_4.613123 30070..30618 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1820.t1 ID=Gcaud1820.t1|Name=Gcaud1820.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=183bp
MFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEV
RIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPL
QGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALP
IVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002298DNA_polymerase_A
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR043502DNA/RNA_pol_sf