Gcaud1820.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1820.t1
Unique Name	Gcaud1820.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:30070..30618 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4155.Migut.H01840.1.p
PFAMs	DNA_pol_A,DNA_pol_A_exo1
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC02795
KEGG ko	ko:K02335
KEGG Reaction	R00375,R00376,R00377,R00378
KEGG Pathway	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOs	GO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Evalue	6.5e-62
EggNOG OGs	COG0749@1\|root,KOG0950@2759\|Eukaryota,37SRP@33090\|Viridiplantae,3GH7Y@35493\|Streptophyta,44FD2@71274\|asterids
EC	2.7.7.7
Description	DNA polymerase A domain
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1820	Gcaud1820	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 30070..32430 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1820.t1.stop1	Gcaud1820.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 30070..30072 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1820.t1.CDS1	Gcaud1820.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 30070..30618 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1820.t1.exon1	Gcaud1820.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 30070..30618 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1820.t1.start1	Gcaud1820.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 30616..30618 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1820.t1	Gcaud1820.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 30070..30618 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:30070..30618-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:30070..30618-

mRNA sequence

>Gcaud1820.t1 ID=Gcaud1820.t1|Name=Gcaud1820.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=183bp
MFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEV
RIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPL
QGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALP
IVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK*

spliced messenger RNA

>Gcaud1820.t1 ID=Gcaud1820.t1|Name=Gcaud1820.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=549bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:30070..30618- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCTACCGAAAGAAGAAAAGCGAAGACATTAAATTTTTCAATTGC
CTATGGAAAAACAATTGTTGGCCTTGCTCGAGACTGGAACACAAGTGAAG
AGGAAGCAGCTGAAACATTGAACTTGTGGTACAAAGAGCGTCAGGAGGTA
AGAATATGGCAGCGGGAGTGCAAGAAGTTCCTCCAGAAGCACCATTTTGT
TGAAACTATACTCGGCAGAAGAAGGCATTTACCTGACATAGTTTCCGTGA
AACCACACGAGAGATTCCACGCACAACGAGCAGCAATAAATGCCCCTCTT
CAAGGATCTGCGGCCGATCTGGTTATGGGTGCGATGCTTAAACTGCATAG
AGATCGAGTTCTGAGAACTTTGGGTTGGAAGGTAATTCTACAAGTTCACG
ACGAAATCATTCTTGAAGGTCCAGAAGAGTCGGCTGACATCGCCTTGCCA
ATCGTAGTGGATAAAATGAAGAATCCTGTTGACGTTGACCTTCGTGTCGA
TTTGACTGTGGATGCGAAGTGTGCAAAATCTTGGTACGAAGCGAAATGA

protein sequence of Gcaud1820.t1

>Gcaud1820.t1 ID=Gcaud1820.t1|Name=Gcaud1820.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=183bp
MFPTERRKAKTLNFSIAYGKTIVGLARDWNTSEEEAAETLNLWYKERQEV
RIWQRECKKFLQKHHFVETILGRRRHLPDIVSVKPHERFHAQRAAINAPL
QGSAADLVMGAMLKLHRDRVLRTLGWKVILQVHDEIILEGPEESADIALP
IVVDKMKNPVDVDLRVDLTVDAKCAKSWYEAK*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:30070..30618-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1820.t1 ID=Gcaud1820.t1|Name=Gcaud1820.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=549bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:30070..30618- (Gracilaria caudata M_176_S67 male)
ATGTTTCCTACCGAAAGAAGAAAAGCGAAGACATTAAATTTTTCAATTGC
CTATGGAAAAACAATTGTTGGCCTTGCTCGAGACTGGAACACAAGTGAAG
AGGAAGCAGCTGAAACATTGAACTTGTGGTACAAAGAGCGTCAGGAGGTA
AGAATATGGCAGCGGGAGTGCAAGAAGTTCCTCCAGAAGCACCATTTTGT
TGAAACTATACTCGGCAGAAGAAGGCATTTACCTGACATAGTTTCCGTGA
AACCACACGAGAGATTCCACGCACAACGAGCAGCAATAAATGCCCCTCTT
CAAGGATCTGCGGCCGATCTGGTTATGGGTGCGATGCTTAAACTGCATAG
AGATCGAGTTCTGAGAACTTTGGGTTGGAAGGTAATTCTACAAGTTCACG
ACGAAATCATTCTTGAAGGTCCAGAAGAGTCGGCTGACATCGCCTTGCCA
ATCGTAGTGGATAAAATGAAGAATCCTGTTGACGTTGACCTTCGTGTCGA
TTTGACTGTGGATGCGAAGTGTGCAAAATCTTGGTACGAAGCGAAATGA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:30070..30618-

>Gcaud1820.t1 ID=Gcaud1820.t1|Name=Gcaud1820.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=549bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:30070..30618- (Gracilaria caudata M_176_S67 male)
ATGTTTCCTACCGAAAGAAGAAAAGCGAAGACATTAAATTTTTCAATTGC
CTATGGAAAAACAATTGTTGGCCTTGCTCGAGACTGGAACACAAGTGAAG
AGGAAGCAGCTGAAACATTGAACTTGTGGTACAAAGAGCGTCAGGAGGTA
AGAATATGGCAGCGGGAGTGCAAGAAGTTCCTCCAGAAGCACCATTTTGT
TGAAACTATACTCGGCAGAAGAAGGCATTTACCTGACATAGTTTCCGTGA
AACCACACGAGAGATTCCACGCACAACGAGCAGCAATAAATGCCCCTCTT
CAAGGATCTGCGGCCGATCTGGTTATGGGTGCGATGCTTAAACTGCATAG
AGATCGAGTTCTGAGAACTTTGGGTTGGAAGGTAATTCTACAAGTTCACG
ACGAAATCATTCTTGAAGGTCCAGAAGAGTCGGCTGACATCGCCTTGCCA
ATCGTAGTGGATAAAATGAAGAATCCTGTTGACGTTGACCTTCGTGTCGA
TTTGACTGTGGATGCGAAGTGTGCAAAATCTTGGTACGAAGCGAAATGA