Gcaud2519.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2519.t1
Unique NameGcaud2519.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length561
Homology
BLAST of Gcaud2519.t1 vs. uniprot
Match: A0A7S1XF58_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF58_9RHOD)

HSP 1 Score: 189 bits (480), Expect = 1.180e-49
Identity = 129/465 (27.74%), Postives = 232/465 (49.89%), Query Frame = 0
Query:  101 QSIRTLDRLLGQIEDATDIDLFPTSTGWRFIRTALSGHVDEFVLQSSALELFYIYTNSSGLMPGSTTLLRRGNNITGIQAQEFTSLS-HVRDFPVRLIMRK---SGNGTFDFPLPFQDISNSLALGNDVFGRLTADCSIGAPDQAVSIAGFTEARREDCMGASGRIADDSHCWYANNRCRDPNCVENCCVK---------YWSEYDINATCAFLALRPIRINSSLSFMDLMEESSSWSLDPPLGSGLPLQKALIRISERRDSSRSNIPLNRETQNQLDRASDATDLLLSRMMLSAESSLSSRPSSIDLTLVCVTVLSAFLAIDSIATYRLLSKKMAQWTNVDIRSTCLNSFLILFVALIAASPAFITSAVIIYQETTRGTLNMIRSGNGWHAELIWDNLDAEDVWLIRRVIADMKLSTTYGIRPLYIILPVVLTVADFALE---IGSVLKYNYQHKRIQLGAFEK 549
            + +  ++  +G + D+    + P ST W++ +     H D+  + ++++EL Y+Y  S+GL+P +    RRG++       E  + +    +  ++ ++RK   S    + FP    ++     +GN  +G+ T DC+       VSIA F+  +  DC+G       D+ C  A N C D   +EN              WS Y  NATCA+  +   R++S++SF+DL+E+SS W+   P G+    Q+ ++    + +  + ++    E   Q   +S AT+  +S+     + SL SRPS+IDLTLVC  +L+  LAID    YR  S    ++    +    +    I+F  L++ASP  + + ++IY E + G+L+ + S + ++ + I+     E +W +R V   + + +  G RPLY+ILPV+L++ D A E   +    +  Y   RI+   F++
Sbjct:   68 EDLAQVESAIGDLTDSPSRRIAPASTAWKYFQQTFWSHPDDLRMTATSVELHYLYAPSTGLIPIALRDFRRGDSYWKTPPSEAIAAAVEPSETFLKPVLRKTQSSQGNLWSFPSHTDNLDGISVVGNASYGQTTNDCTERGVPIEVSIAQFSRFQTADCIGVVVPWKWDAQCLAAINNCTDLAFMENDSTLPRCGSMPNLAWSAYYQNATCAWPGVSLYRLSSNVSFLDLLEDSSFWA--QPNGTQEMYQEIIVNTRSKANRQQDSVT---EATEQATSSSGATEAAISQAAWDIQRSLISRPSTIDLTLVCAGLLANALAIDGSKVYRGASYVAGKYIRSPVTLRRVRFGGIIFSTLLSASPGLVVTGILIYLEASWGSLHKVESLSTFYGQDIYQESAGEHIWWVRSVEVHLNILSGSGTRPLYVILPVILSLFDVAFELFLVSHAFRKQYGINRIKTQDFQE 527          
BLAST of Gcaud2519.t1 vs. uniprot
Match: A0A2V3IP50_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP50_9FLOR)

HSP 1 Score: 96.7 bits (239), Expect = 2.610e-19
Identity = 66/196 (33.67%), Postives = 106/196 (54.08%), Query Frame = 0
Query:  298 CAFLALRPIRINSSLSFMDLMEESSSWSLDPPLGSGLPLQKALIRISERRDSSRSNIPLNRETQNQLDRASDATDLLLSRMMLSAESSLSS---RPSSIDLTLVCVTVLSAFLAIDSIATYRLLSKKMAQWTNVDIRSTCLNSFLILFVALIAASPAFITSAVIIYQETTRGTLNMIRS-------GNGWHAELIW 483
            CA++ + P+++NS++ F+DL+ ++  WSL+PP G+G PLQ ALI   + +        + RET+NQL    DA   +L  +    +  L +   +P+++DL LVC  VLSA +AIDS+  ++ L +   +     I+      F  + V LIA SP+ IT +VII  E +     +  +       G+ WHA  IW
Sbjct:    2 CAYVQINPLKLNSTVKFIDLLNDACYWSLNPPQGTGRPLQMALIVNEDYKGH------VERETENQLQSMDDAAKDVLDAVRREVKYRLDTHALKPNALDLALVCAAVLSAIMAIDSVEIHKCLIRIGCKLNEEQIQPIRKIMFYAMAV-LIAGSPSLITVSVIILHEDSEIIWEIYPNEITGHFYGSAWHAMAIW 190          
The following BLAST results are available for this feature:
BLAST of Gcaud2519.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1XF58_9RHOD1.180e-4927.74Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A2V3IP50_9FLOR2.610e-1933.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 438..460
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 395..418
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 56..394
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 419..437
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 461..511
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 534..560
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 512..533
NoneNo IPR availableTMHMMTMhelixcoord: 511..533
NoneNo IPR availableTMHMMTMhelixcoord: 438..460
NoneNo IPR availableTMHMMTMhelixcoord: 396..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2251_length_6303_cov_4.552801contigNODE_2251_length_6303_cov_4.552801:1894..3576 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2519.t1Gcaud2519.t1Gracilaria caudata M_176_S67 malemRNANODE_2251_length_6303_cov_4.552801 1894..3576 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2519.t1 ID=Gcaud2519.t1|Name=Gcaud2519.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=561bp
MLLKNPVVLDCSISLTEANNEWQLRHRLHPIAFCSQMASVTLFWIIISLL
LIAYVHCDDNLSSSPLLFELDDFARQMFQSSSIARGLFNANENDLNTSAY
QSIRTLDRLLGQIEDATDIDLFPTSTGWRFIRTALSGHVDEFVLQSSALE
LFYIYTNSSGLMPGSTTLLRRGNNITGIQAQEFTSLSHVRDFPVRLIMRK
SGNGTFDFPLPFQDISNSLALGNDVFGRLTADCSIGAPDQAVSIAGFTEA
RREDCMGASGRIADDSHCWYANNRCRDPNCVENCCVKYWSEYDINATCAF
LALRPIRINSSLSFMDLMEESSSWSLDPPLGSGLPLQKALIRISERRDSS
RSNIPLNRETQNQLDRASDATDLLLSRMMLSAESSLSSRPSSIDLTLVCV
TVLSAFLAIDSIATYRLLSKKMAQWTNVDIRSTCLNSFLILFVALIAASP
AFITSAVIIYQETTRGTLNMIRSGNGWHAELIWDNLDAEDVWLIRRVIAD
MKLSTTYGIRPLYIILPVVLTVADFALEIGSVLKYNYQHKRIQLGAFEKE
DNLFDTESQE*
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