Gcaud2519.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2519.t1
Unique Name	Gcaud2519.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	561

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2251_length_6303_cov_4.552801	contig	NODE_2251_length_6303_cov_4.552801:1894..3576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2519	Gcaud2519	Gracilaria caudata M_176_S67 male	gene	NODE_2251_length_6303_cov_4.552801 1894..3576 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2519.t1.stop1	Gcaud2519.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2251_length_6303_cov_4.552801 1894..1896 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2519.t1.CDS1	Gcaud2519.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2251_length_6303_cov_4.552801 1894..3576 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2519.t1.exon1	Gcaud2519.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2251_length_6303_cov_4.552801 1894..3576 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2519.t1.start1	Gcaud2519.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2251_length_6303_cov_4.552801 3574..3576 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2519.t1	Gcaud2519.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2251_length_6303_cov_4.552801 1894..3576 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2251_length_6303_cov_4.552801:1894..3576-
coding sequence from alignment at NODE_2251_length_6303_cov_4.552801:1894..3576-

mRNA sequence

>Gcaud2519.t1 ID=Gcaud2519.t1|Name=Gcaud2519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp
MLLKNPVVLDCSISLTEANNEWQLRHRLHPIAFCSQMASVTLFWIIISLL
LIAYVHCDDNLSSSPLLFELDDFARQMFQSSSIARGLFNANENDLNTSAY
QSIRTLDRLLGQIEDATDIDLFPTSTGWRFIRTALSGHVDEFVLQSSALE
LFYIYTNSSGLMPGSTTLLRRGNNITGIQAQEFTSLSHVRDFPVRLIMRK
SGNGTFDFPLPFQDISNSLALGNDVFGRLTADCSIGAPDQAVSIAGFTEA
RREDCMGASGRIADDSHCWYANNRCRDPNCVENCCVKYWSEYDINATCAF
LALRPIRINSSLSFMDLMEESSSWSLDPPLGSGLPLQKALIRISERRDSS
RSNIPLNRETQNQLDRASDATDLLLSRMMLSAESSLSSRPSSIDLTLVCV
TVLSAFLAIDSIATYRLLSKKMAQWTNVDIRSTCLNSFLILFVALIAASP
AFITSAVIIYQETTRGTLNMIRSGNGWHAELIWDNLDAEDVWLIRRVIAD
MKLSTTYGIRPLYIILPVVLTVADFALEIGSVLKYNYQHKRIQLGAFEKE
DNLFDTESQE*

spliced messenger RNA

>Gcaud2519.t1 ID=Gcaud2519.t1|Name=Gcaud2519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at NODE_2251_length_6303_cov_4.552801:1894..3576- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTTAAGAACCCTGTTGTTTTGGATTGCTCCATCTCTCTCACCGA
AGCGAACAACGAATGGCAACTCCGTCACCGTCTACATCCCATTGCGTTCT
GCTCCCAAATGGCCTCCGTTACACTGTTCTGGATCATCATTTCTCTTCTC
TTGATCGCTTACGTCCATTGCGATGACAATCTTTCAAGCTCGCCGCTTCT
TTTCGAACTGGATGACTTCGCCCGCCAAATGTTCCAGTCCAGTTCCATAG
CTCGTGGTCTGTTCAATGCAAATGAAAACGACCTCAATACGTCCGCCTAC
CAATCAATCCGAACATTGGACCGCTTGCTTGGCCAGATAGAAGATGCTAC
CGACATTGATCTTTTCCCAACTTCCACAGGTTGGAGATTCATTCGCACAG
CTCTGTCTGGACACGTTGACGAATTTGTGCTTCAGTCGAGCGCTTTGGAA
CTGTTCTATATTTACACCAACTCTTCTGGCCTCATGCCTGGATCCACGAC
TCTGCTGAGGCGTGGAAACAATATCACAGGCATTCAAGCTCAAGAGTTTA
CTTCCCTCAGCCACGTCCGTGACTTTCCAGTGCGTTTGATCATGCGCAAG
AGTGGAAACGGAACCTTTGATTTCCCTCTTCCATTTCAAGACATCTCCAA
CTCTTTGGCTCTCGGAAATGATGTGTTCGGTCGCCTAACGGCCGACTGTT
CCATCGGTGCACCAGACCAAGCTGTCAGCATCGCTGGGTTCACAGAGGCG
AGACGTGAAGATTGTATGGGAGCTTCAGGAAGAATAGCCGATGACTCTCA
CTGCTGGTACGCAAACAATCGCTGTCGAGATCCAAACTGTGTTGAGAACT
GCTGCGTAAAGTACTGGAGCGAATATGACATAAATGCTACGTGCGCTTTC
CTGGCTTTAAGACCCATACGCATTAACAGCTCGCTGTCGTTCATGGACCT
CATGGAAGAGAGCAGTAGCTGGAGCCTTGATCCACCATTGGGCAGCGGGC
TACCATTGCAGAAGGCACTTATACGGATAAGCGAGAGAAGAGATTCAAGT
CGTTCGAATATCCCATTGAACAGGGAGACACAAAACCAGTTGGATCGAGC
CAGCGATGCCACTGATCTGCTATTATCTCGTATGATGCTTTCAGCGGAAA
GCTCTCTTTCTTCGAGACCTTCAAGCATCGACCTGACTCTAGTGTGTGTA
ACAGTTCTTTCTGCGTTTCTCGCTATCGATTCTATCGCTACTTACCGATT
GTTGTCCAAGAAAATGGCACAGTGGACAAATGTTGATATCCGTTCAACAT
GTTTGAATAGCTTCTTGATCCTTTTTGTGGCACTAATCGCAGCTTCACCA
GCATTCATCACCTCAGCCGTCATTATCTATCAAGAGACTACACGAGGAAC
GTTGAACATGATACGATCCGGAAACGGATGGCACGCAGAGCTCATTTGGG
ACAATCTCGATGCAGAGGACGTATGGTTGATTCGAAGGGTAATTGCGGAC
ATGAAACTTTCAACAACCTACGGGATACGACCGTTGTATATCATTCTCCC
CGTGGTCCTCACCGTGGCCGACTTTGCCCTAGAAATTGGCTCCGTATTGA
AGTACAACTACCAACATAAACGCATCCAATTAGGAGCTTTTGAGAAGGAG
GACAATCTTTTTGATACGGAGTCCCAAGAATAA

protein sequence of Gcaud2519.t1

>Gcaud2519.t1 ID=Gcaud2519.t1|Name=Gcaud2519.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=561bp
MLLKNPVVLDCSISLTEANNEWQLRHRLHPIAFCSQMASVTLFWIIISLL
LIAYVHCDDNLSSSPLLFELDDFARQMFQSSSIARGLFNANENDLNTSAY
QSIRTLDRLLGQIEDATDIDLFPTSTGWRFIRTALSGHVDEFVLQSSALE
LFYIYTNSSGLMPGSTTLLRRGNNITGIQAQEFTSLSHVRDFPVRLIMRK
SGNGTFDFPLPFQDISNSLALGNDVFGRLTADCSIGAPDQAVSIAGFTEA
RREDCMGASGRIADDSHCWYANNRCRDPNCVENCCVKYWSEYDINATCAF
LALRPIRINSSLSFMDLMEESSSWSLDPPLGSGLPLQKALIRISERRDSS
RSNIPLNRETQNQLDRASDATDLLLSRMMLSAESSLSSRPSSIDLTLVCV
TVLSAFLAIDSIATYRLLSKKMAQWTNVDIRSTCLNSFLILFVALIAASP
AFITSAVIIYQETTRGTLNMIRSGNGWHAELIWDNLDAEDVWLIRRVIAD
MKLSTTYGIRPLYIILPVVLTVADFALEIGSVLKYNYQHKRIQLGAFEKE
DNLFDTESQE*

mRNA from alignment at NODE_2251_length_6303_cov_4.552801:1894..3576-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2519.t1 ID=Gcaud2519.t1|Name=Gcaud2519.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at NODE_2251_length_6303_cov_4.552801:1894..3576- (Gracilaria caudata M_176_S67 male)
ATGTTGCTTAAGAACCCTGTTGTTTTGGATTGCTCCATCTCTCTCACCGA
AGCGAACAACGAATGGCAACTCCGTCACCGTCTACATCCCATTGCGTTCT
GCTCCCAAATGGCCTCCGTTACACTGTTCTGGATCATCATTTCTCTTCTC
TTGATCGCTTACGTCCATTGCGATGACAATCTTTCAAGCTCGCCGCTTCT
TTTCGAACTGGATGACTTCGCCCGCCAAATGTTCCAGTCCAGTTCCATAG
CTCGTGGTCTGTTCAATGCAAATGAAAACGACCTCAATACGTCCGCCTAC
CAATCAATCCGAACATTGGACCGCTTGCTTGGCCAGATAGAAGATGCTAC
CGACATTGATCTTTTCCCAACTTCCACAGGTTGGAGATTCATTCGCACAG
CTCTGTCTGGACACGTTGACGAATTTGTGCTTCAGTCGAGCGCTTTGGAA
CTGTTCTATATTTACACCAACTCTTCTGGCCTCATGCCTGGATCCACGAC
TCTGCTGAGGCGTGGAAACAATATCACAGGCATTCAAGCTCAAGAGTTTA
CTTCCCTCAGCCACGTCCGTGACTTTCCAGTGCGTTTGATCATGCGCAAG
AGTGGAAACGGAACCTTTGATTTCCCTCTTCCATTTCAAGACATCTCCAA
CTCTTTGGCTCTCGGAAATGATGTGTTCGGTCGCCTAACGGCCGACTGTT
CCATCGGTGCACCAGACCAAGCTGTCAGCATCGCTGGGTTCACAGAGGCG
AGACGTGAAGATTGTATGGGAGCTTCAGGAAGAATAGCCGATGACTCTCA
CTGCTGGTACGCAAACAATCGCTGTCGAGATCCAAACTGTGTTGAGAACT
GCTGCGTAAAGTACTGGAGCGAATATGACATAAATGCTACGTGCGCTTTC
CTGGCTTTAAGACCCATACGCATTAACAGCTCGCTGTCGTTCATGGACCT
CATGGAAGAGAGCAGTAGCTGGAGCCTTGATCCACCATTGGGCAGCGGGC
TACCATTGCAGAAGGCACTTATACGGATAAGCGAGAGAAGAGATTCAAGT
CGTTCGAATATCCCATTGAACAGGGAGACACAAAACCAGTTGGATCGAGC
CAGCGATGCCACTGATCTGCTATTATCTCGTATGATGCTTTCAGCGGAAA
GCTCTCTTTCTTCGAGACCTTCAAGCATCGACCTGACTCTAGTGTGTGTA
ACAGTTCTTTCTGCGTTTCTCGCTATCGATTCTATCGCTACTTACCGATT
GTTGTCCAAGAAAATGGCACAGTGGACAAATGTTGATATCCGTTCAACAT
GTTTGAATAGCTTCTTGATCCTTTTTGTGGCACTAATCGCAGCTTCACCA
GCATTCATCACCTCAGCCGTCATTATCTATCAAGAGACTACACGAGGAAC
GTTGAACATGATACGATCCGGAAACGGATGGCACGCAGAGCTCATTTGGG
ACAATCTCGATGCAGAGGACGTATGGTTGATTCGAAGGGTAATTGCGGAC
ATGAAACTTTCAACAACCTACGGGATACGACCGTTGTATATCATTCTCCC
CGTGGTCCTCACCGTGGCCGACTTTGCCCTAGAAATTGGCTCCGTATTGA
AGTACAACTACCAACATAAACGCATCCAATTAGGAGCTTTTGAGAAGGAG
GACAATCTTTTTGATACGGAGTCCCAAGAATAA

Coding sequence (CDS) from alignment at NODE_2251_length_6303_cov_4.552801:1894..3576-

>Gcaud2519.t1 ID=Gcaud2519.t1|Name=Gcaud2519.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1683bp|location=Sequence derived from alignment at NODE_2251_length_6303_cov_4.552801:1894..3576- (Gracilaria caudata M_176_S67 male)
ATGTTGCTTAAGAACCCTGTTGTTTTGGATTGCTCCATCTCTCTCACCGA
AGCGAACAACGAATGGCAACTCCGTCACCGTCTACATCCCATTGCGTTCT
GCTCCCAAATGGCCTCCGTTACACTGTTCTGGATCATCATTTCTCTTCTC
TTGATCGCTTACGTCCATTGCGATGACAATCTTTCAAGCTCGCCGCTTCT
TTTCGAACTGGATGACTTCGCCCGCCAAATGTTCCAGTCCAGTTCCATAG
CTCGTGGTCTGTTCAATGCAAATGAAAACGACCTCAATACGTCCGCCTAC
CAATCAATCCGAACATTGGACCGCTTGCTTGGCCAGATAGAAGATGCTAC
CGACATTGATCTTTTCCCAACTTCCACAGGTTGGAGATTCATTCGCACAG
CTCTGTCTGGACACGTTGACGAATTTGTGCTTCAGTCGAGCGCTTTGGAA
CTGTTCTATATTTACACCAACTCTTCTGGCCTCATGCCTGGATCCACGAC
TCTGCTGAGGCGTGGAAACAATATCACAGGCATTCAAGCTCAAGAGTTTA
CTTCCCTCAGCCACGTCCGTGACTTTCCAGTGCGTTTGATCATGCGCAAG
AGTGGAAACGGAACCTTTGATTTCCCTCTTCCATTTCAAGACATCTCCAA
CTCTTTGGCTCTCGGAAATGATGTGTTCGGTCGCCTAACGGCCGACTGTT
CCATCGGTGCACCAGACCAAGCTGTCAGCATCGCTGGGTTCACAGAGGCG
AGACGTGAAGATTGTATGGGAGCTTCAGGAAGAATAGCCGATGACTCTCA
CTGCTGGTACGCAAACAATCGCTGTCGAGATCCAAACTGTGTTGAGAACT
GCTGCGTAAAGTACTGGAGCGAATATGACATAAATGCTACGTGCGCTTTC
CTGGCTTTAAGACCCATACGCATTAACAGCTCGCTGTCGTTCATGGACCT
CATGGAAGAGAGCAGTAGCTGGAGCCTTGATCCACCATTGGGCAGCGGGC
TACCATTGCAGAAGGCACTTATACGGATAAGCGAGAGAAGAGATTCAAGT
CGTTCGAATATCCCATTGAACAGGGAGACACAAAACCAGTTGGATCGAGC
CAGCGATGCCACTGATCTGCTATTATCTCGTATGATGCTTTCAGCGGAAA
GCTCTCTTTCTTCGAGACCTTCAAGCATCGACCTGACTCTAGTGTGTGTA
ACAGTTCTTTCTGCGTTTCTCGCTATCGATTCTATCGCTACTTACCGATT
GTTGTCCAAGAAAATGGCACAGTGGACAAATGTTGATATCCGTTCAACAT
GTTTGAATAGCTTCTTGATCCTTTTTGTGGCACTAATCGCAGCTTCACCA
GCATTCATCACCTCAGCCGTCATTATCTATCAAGAGACTACACGAGGAAC
GTTGAACATGATACGATCCGGAAACGGATGGCACGCAGAGCTCATTTGGG
ACAATCTCGATGCAGAGGACGTATGGTTGATTCGAAGGGTAATTGCGGAC
ATGAAACTTTCAACAACCTACGGGATACGACCGTTGTATATCATTCTCCC
CGTGGTCCTCACCGTGGCCGACTTTGCCCTAGAAATTGGCTCCGTATTGA
AGTACAACTACCAACATAAACGCATCCAATTAGGAGCTTTTGAGAAGGAG
GACAATCTTTTTGATACGGAGTCCCAAGAATAA