Gcaud2276.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2276.t1
Unique NameGcaud2276.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2244_length_6318_cov_4.442749contigNODE_2244_length_6318_cov_4.442749:2057..3076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707378.1
Preferred nameRPS3a
PFAMsRibosomal_S3Ae
Max annot lvl2759|Eukaryota
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue2.09e-122
EggNOG OGsCOG1890@1|root,KOG1628@2759|Eukaryota
EC5.3.1.6
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2276Gcaud2276Gracilaria caudata M_176_S67 malegeneNODE_2244_length_6318_cov_4.442749 2057..3076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2276.t1Gcaud2276.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2244_length_6318_cov_4.442749 2057..3076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2276.t1.CDS1Gcaud2276.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2244_length_6318_cov_4.442749 2057..2059 +
Gcaud2276.t1.CDS2Gcaud2276.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2244_length_6318_cov_4.442749 2282..3076 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2276.t1.exon1Gcaud2276.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2244_length_6318_cov_4.442749 2057..2059 +
Gcaud2276.t1.exon2Gcaud2276.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2244_length_6318_cov_4.442749 2282..3076 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2276.t1.start1Gcaud2276.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2244_length_6318_cov_4.442749 2057..2059 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2276.t1.intron1Gcaud2276.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2244_length_6318_cov_4.442749 2060..2281 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2276.t1.stop1Gcaud2276.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2244_length_6318_cov_4.442749 3074..3076 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2276.t1 ID=Gcaud2276.t1|Name=Gcaud2276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp
MAVGKNKRLSKKGKGSRKKIMDPFLRKEWYDIKAPSIFNVRQVGKTLVSR
TQGTRIASEALKGRIYEVILADLQKSEDMAYRKIRLKCEEVQGRSCLTNF
NGMDLTRDKLCSLVRKWQTIIEAHVDVKTTDGYFLRMFAIGFTKRRDGQV
KKTTYAQSSQIREIRAKMVEIMARDASECDLKELVRKFIPEVIGKEIMKA
TSGIYPLRDVHIRKVKILKAPKFDITKLMELHEAGGATEDVGAPVEAAPE
EPVAPQEPIPGDIPA*
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spliced messenger RNA

>Gcaud2276.t1 ID=Gcaud2276.t1|Name=Gcaud2276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:2057..3076+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTCGGCAAGAATAAGCGTCTGTCCAAGAAGGGCAAGGGATCGCG
CAAGAAGATCATGGATCCGTTTTTGCGTAAAGAATGGTACGACATCAAGG
CGCCGTCCATCTTCAACGTGCGTCAAGTAGGAAAGACGCTCGTGTCTCGC
ACGCAAGGCACAAGAATCGCCTCTGAAGCGCTGAAAGGTCGCATCTACGA
AGTGATTCTGGCTGATCTTCAGAAGTCGGAGGACATGGCTTATCGTAAGA
TACGTCTAAAGTGCGAGGAGGTTCAGGGTCGTTCTTGTCTCACCAATTTC
AATGGCATGGACCTCACGCGTGACAAGTTGTGCTCGCTGGTGCGAAAGTG
GCAGACCATTATTGAGGCGCATGTTGACGTCAAGACCACCGATGGTTACT
TTCTGCGAATGTTTGCAATCGGCTTTACCAAGCGCAGAGACGGTCAGGTG
AAGAAAACCACCTACGCTCAAAGCAGTCAAATTCGTGAAATCCGTGCCAA
GATGGTTGAAATCATGGCACGCGATGCGTCGGAGTGCGATCTTAAGGAGC
TTGTGAGAAAGTTCATCCCCGAGGTGATCGGAAAGGAGATTATGAAGGCT
ACCTCTGGTATTTATCCGCTCAGAGATGTGCATATCAGAAAGGTCAAAAT
TCTCAAGGCACCCAAGTTTGATATTACCAAGCTAATGGAGCTACACGAAG
CTGGTGGAGCCACTGAGGATGTGGGCGCTCCTGTTGAAGCTGCTCCTGAA
GAACCTGTTGCACCACAGGAACCCATTCCTGGCGATATTCCCGCGTAA
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protein sequence of Gcaud2276.t1

>Gcaud2276.t1 ID=Gcaud2276.t1|Name=Gcaud2276.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MAVGKNKRLSKKGKGSRKKIMDPFLRKEWYDIKAPSIFNVRQVGKTLVSR
TQGTRIASEALKGRIYEVILADLQKSEDMAYRKIRLKCEEVQGRSCLTNF
NGMDLTRDKLCSLVRKWQTIIEAHVDVKTTDGYFLRMFAIGFTKRRDGQV
KKTTYAQSSQIREIRAKMVEIMARDASECDLKELVRKFIPEVIGKEIMKA
TSGIYPLRDVHIRKVKILKAPKFDITKLMELHEAGGATEDVGAPVEAAPE
EPVAPQEPIPGDIPA*
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mRNA from alignment at NODE_2244_length_6318_cov_4.442749:2057..3076+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2276.t1 ID=Gcaud2276.t1|Name=Gcaud2276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:2057..3076+ (Gracilaria caudata M_176_S67 male)
ATGGTACGTGCTCAGCCCTCTTTGAAACCTGCGTTCACCTCAGTGCTGCC
GTTTTTGCTTATCGCGATACACATATCTTCTCTTTGCCGAGAACTGTTGC
GATCAATCCATCCATTTCGTTTGCGCTGGCGGATCTACTTCATTCCATTC
ATCTGCTAACGCCGTCCGCGCTTTTTTTTTGCTCCCGTGCAATGTTCACT
CGCTCGCTTTTTTTTTGTCGAGTAGGCTGTCGGCAAGAATAAGCGTCTGT
CCAAGAAGGGCAAGGGATCGCGCAAGAAGATCATGGATCCGTTTTTGCGT
AAAGAATGGTACGACATCAAGGCGCCGTCCATCTTCAACGTGCGTCAAGT
AGGAAAGACGCTCGTGTCTCGCACGCAAGGCACAAGAATCGCCTCTGAAG
CGCTGAAAGGTCGCATCTACGAAGTGATTCTGGCTGATCTTCAGAAGTCG
GAGGACATGGCTTATCGTAAGATACGTCTAAAGTGCGAGGAGGTTCAGGG
TCGTTCTTGTCTCACCAATTTCAATGGCATGGACCTCACGCGTGACAAGT
TGTGCTCGCTGGTGCGAAAGTGGCAGACCATTATTGAGGCGCATGTTGAC
GTCAAGACCACCGATGGTTACTTTCTGCGAATGTTTGCAATCGGCTTTAC
CAAGCGCAGAGACGGTCAGGTGAAGAAAACCACCTACGCTCAAAGCAGTC
AAATTCGTGAAATCCGTGCCAAGATGGTTGAAATCATGGCACGCGATGCG
TCGGAGTGCGATCTTAAGGAGCTTGTGAGAAAGTTCATCCCCGAGGTGAT
CGGAAAGGAGATTATGAAGGCTACCTCTGGTATTTATCCGCTCAGAGATG
TGCATATCAGAAAGGTCAAAATTCTCAAGGCACCCAAGTTTGATATTACC
AAGCTAATGGAGCTACACGAAGCTGGTGGAGCCACTGAGGATGTGGGCGC
TCCTGTTGAAGCTGCTCCTGAAGAACCTGTTGCACCACAGGAACCCATTC
CTGGCGATATTCCCGCGTAA
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Coding sequence (CDS) from alignment at NODE_2244_length_6318_cov_4.442749:2057..3076+

>Gcaud2276.t1 ID=Gcaud2276.t1|Name=Gcaud2276.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=798bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:2057..3076+ (Gracilaria caudata M_176_S67 male)
ATGGCTGTCGGCAAGAATAAGCGTCTGTCCAAGAAGGGCAAGGGATCGCG
CAAGAAGATCATGGATCCGTTTTTGCGTAAAGAATGGTACGACATCAAGG
CGCCGTCCATCTTCAACGTGCGTCAAGTAGGAAAGACGCTCGTGTCTCGC
ACGCAAGGCACAAGAATCGCCTCTGAAGCGCTGAAAGGTCGCATCTACGA
AGTGATTCTGGCTGATCTTCAGAAGTCGGAGGACATGGCTTATCGTAAGA
TACGTCTAAAGTGCGAGGAGGTTCAGGGTCGTTCTTGTCTCACCAATTTC
AATGGCATGGACCTCACGCGTGACAAGTTGTGCTCGCTGGTGCGAAAGTG
GCAGACCATTATTGAGGCGCATGTTGACGTCAAGACCACCGATGGTTACT
TTCTGCGAATGTTTGCAATCGGCTTTACCAAGCGCAGAGACGGTCAGGTG
AAGAAAACCACCTACGCTCAAAGCAGTCAAATTCGTGAAATCCGTGCCAA
GATGGTTGAAATCATGGCACGCGATGCGTCGGAGTGCGATCTTAAGGAGC
TTGTGAGAAAGTTCATCCCCGAGGTGATCGGAAAGGAGATTATGAAGGCT
ACCTCTGGTATTTATCCGCTCAGAGATGTGCATATCAGAAAGGTCAAAAT
TCTCAAGGCACCCAAGTTTGATATTACCAAGCTAATGGAGCTACACGAAG
CTGGTGGAGCCACTGAGGATGTGGGCGCTCCTGTTGAAGCTGCTCCTGAA
GAACCTGTTGCACCACAGGAACCCATTCCTGGCGATATTCCCGCGTAA
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