Gcaud2570.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2570.t1
Unique Name	Gcaud2570.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	537

Homology

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BLAST of Gcaud2570.t1 vs. uniprot
Match: A0A2V3IGK7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGK7_9FLOR)

HSP 1 Score: 631 bits (1628), Expect = 3.250e-220
Identity = 353/584 (60.45%), Postives = 408/584 (69.86%), Query Frame = 0

Query:   14 QSQSVAFLLLGALLGVAYSLGTEKYMRAMRHPHIFVRNAMLWLSAMAWLVAAAAVAWLASRIYNQTDGGLEGFDRSLGVLIPFVVRADLIVDWAKRVAWALLNMSTWTQATVQIHRLLHRAPNMQQLVSVNPDVSSIISFSTITQTQLVQSEDHLWTQDAHSLVHLSELIHHFEKLGRVAVYAVAVFFASLPATVAWILFAVYQIFVSIRSSTKAIALLYLVSIFLAPVCAVVLIISALFLLGGVVTLSVVGIIVQFSVYWSTRIMYYMVRVTLSQAWAGFPKLHYLHMGHKVDYDLANGHMAVRGARNPDEAGIAMAQMGSLLPTELEFILSSWDGTDQRRGDRLKPISASISRHIRSLSFI-------------------------VVTAIVPKIVLFSFQKGFIRSHQNGELIIAHPITAV----------------------------------PWSSRRRRLSTFYAFAMLVQLQVESGGNAWCLHSAQNLSDSEYSSRISDLKCIIADEACTAVDELISRLRGSSKYRLIPTGFPSSRMVPVEDWLKTVLLNFLETATK---SDDDPPTPGVSALSLE 535
            QSQSV FLLLGALLGVAYSLGTEKYMRAMRHPHIFVRNAMLWLSA+AWL AAAAV WLASRIYNQ DGGLEGFDRS+GVLIPFVVRADLIVDWAKRVAWAL+NMSTWTQ+TVQ+ RLL RAP M+  V VN DV+ +   S   Q++L+ +E+ LWTQDAHSLVHLSEL+HHFEKLGRVAVYA+AV   ++PA +AW+++AVYQI +  R S  A ALLY  SI L PV A VLIIS++ LLGGVV+LSVVG I+QFSVYWSTRI YYMVRV LSQ WAGFP L  LH  H VD D+A   M VRG R+P EA IAMA+MGSLLPTELEF LSSWDGTD+R+G RLKPIS SISRH+R+LSFI                           T    +  L +          N +L  A  I +                                     S RRRRLSTFYAFAMLV +Q+ESGGNAW L+S + L DS++  RIS   C+IADEA  AV+EL +RL+ SSKYR++PTG+PSSRMVPV DWL++ LL FL+       SDD    P +SALS+E
Sbjct:   34 QSQSVVFLLLGALLGVAYSLGTEKYMRAMRHPHIFVRNAMLWLSAIAWLFAAAAVIWLASRIYNQVDGGLEGFDRSMGVLIPFVVRADLIVDWAKRVAWALINMSTWTQSTVQLRRLLRRAPQMEHAVCVNHDVTDLFRTSESVQSRLLTAENQLWTQDAHSLVHLSELVHHFEKLGRVAVYALAVLVGAIPAALAWLVYAVYQIIICFRCSAHAPALLYTASIMLTPVFAFVLIISSIILLGGVVSLSVVGTIIQFSVYWSTRIAYYMVRVLLSQQWAGFPHLRTLHTMHAVDPDIATASMIVRGIRSPAEASIAMAEMGSLLPTELEFSLSSWDGTDKRKGGRLKPISVSISRHVRTLSFIGDFVDRHSSSANSSPPNGNPSASSTANTKETHRSELDTAASSAESGRHNRQLQNADRIPSSIEVHGSEARTDEERAKDRNVAILLLMQKLGLDLSVKSGRRRRLSTFYAFAMLVHMQIESGGNAWRLNSVEYLCDSDFKKRISSFSCVIADEASIAVEELSNRLKVSSKYRVVPTGYPSSRMVPVADWLRSALLGFLDADVDMVYSDD--KAPEISALSVE 615

The following BLAST results are available for this feature:

BLAST of Gcaud2570.t1 vs. uniprot

BLAST of Gcaud2570.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IGK7_9FLOR	3.250e-220	60.45	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 192..216
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 217..227
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 370..390
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 54..73
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 34..53
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 255..274
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 228..249
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 275..369
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 391..536
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 15..33
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 250..254
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 74..191
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..14
None	No IPR available	TMHMM	TMhelix		coord: 15..34
None	No IPR available	TMHMM	TMhelix		coord: 373..395
None	No IPR available	TMHMM	TMhelix		coord: 229..248
None	No IPR available	TMHMM	TMhelix		coord: 194..216
None	No IPR available	TMHMM	TMhelix		coord: 54..76
None	No IPR available	TMHMM	TMhelix		coord: 252..274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1064_length_14381_cov_4.633380	contig	NODE_1064_length_14381_cov_4.633380:2855..4645 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2570.t1	Gcaud2570.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1064_length_14381_cov_4.633380 2855..4645 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2570.t1 ID=Gcaud2570.t1|Name=Gcaud2570.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=537bp
MSVANRVDAVEQAQSQSVAFLLLGALLGVAYSLGTEKYMRAMRHPHIFVR
NAMLWLSAMAWLVAAAAVAWLASRIYNQTDGGLEGFDRSLGVLIPFVVRA
DLIVDWAKRVAWALLNMSTWTQATVQIHRLLHRAPNMQQLVSVNPDVSSI
ISFSTITQTQLVQSEDHLWTQDAHSLVHLSELIHHFEKLGRVAVYAVAVF
FASLPATVAWILFAVYQIFVSIRSSTKAIALLYLVSIFLAPVCAVVLIIS
ALFLLGGVVTLSVVGIIVQFSVYWSTRIMYYMVRVTLSQAWAGFPKLHYL
HMGHKVDYDLANGHMAVRGARNPDEAGIAMAQMGSLLPTELEFILSSWDG
TDQRRGDRLKPISASISRHIRSLSFIVVTAIVPKIVLFSFQKGFIRSHQN
GELIIAHPITAVPWSSRRRRLSTFYAFAMLVQLQVESGGNAWCLHSAQNL
SDSEYSSRISDLKCIIADEACTAVDELISRLRGSSKYRLIPTGFPSSRMV
PVEDWLKTVLLNFLETATKSDDDPPTPGVSALSLED*