Gcaud2570.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2570.t1
Unique NameGcaud2570.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length537
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1064_length_14381_cov_4.633380contigNODE_1064_length_14381_cov_4.633380:2855..4645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2570Gcaud2570Gracilaria caudata M_176_S67 malegeneNODE_1064_length_14381_cov_4.633380 2855..4645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2570.t1Gcaud2570.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1064_length_14381_cov_4.633380 2855..4645 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2570.t1.stop1Gcaud2570.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1064_length_14381_cov_4.633380 2855..2857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2570.t1.CDS1Gcaud2570.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1064_length_14381_cov_4.633380 2855..3224 -
Gcaud2570.t1.CDS2Gcaud2570.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1064_length_14381_cov_4.633380 3284..3395 -
Gcaud2570.t1.CDS3Gcaud2570.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1064_length_14381_cov_4.633380 3517..4645 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2570.t1.exon1Gcaud2570.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1064_length_14381_cov_4.633380 2855..3224 -
Gcaud2570.t1.exon2Gcaud2570.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1064_length_14381_cov_4.633380 3284..3395 -
Gcaud2570.t1.exon3Gcaud2570.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1064_length_14381_cov_4.633380 3517..4645 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2570.t1.intron1Gcaud2570.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1064_length_14381_cov_4.633380 3225..3283 -
Gcaud2570.t1.intron2Gcaud2570.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1064_length_14381_cov_4.633380 3396..3516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2570.t1.start1Gcaud2570.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1064_length_14381_cov_4.633380 4643..4645 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2570.t1 ID=Gcaud2570.t1|Name=Gcaud2570.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp
MSVANRVDAVEQAQSQSVAFLLLGALLGVAYSLGTEKYMRAMRHPHIFVR
NAMLWLSAMAWLVAAAAVAWLASRIYNQTDGGLEGFDRSLGVLIPFVVRA
DLIVDWAKRVAWALLNMSTWTQATVQIHRLLHRAPNMQQLVSVNPDVSSI
ISFSTITQTQLVQSEDHLWTQDAHSLVHLSELIHHFEKLGRVAVYAVAVF
FASLPATVAWILFAVYQIFVSIRSSTKAIALLYLVSIFLAPVCAVVLIIS
ALFLLGGVVTLSVVGIIVQFSVYWSTRIMYYMVRVTLSQAWAGFPKLHYL
HMGHKVDYDLANGHMAVRGARNPDEAGIAMAQMGSLLPTELEFILSSWDG
TDQRRGDRLKPISASISRHIRSLSFIVVTAIVPKIVLFSFQKGFIRSHQN
GELIIAHPITAVPWSSRRRRLSTFYAFAMLVQLQVESGGNAWCLHSAQNL
SDSEYSSRISDLKCIIADEACTAVDELISRLRGSSKYRLIPTGFPSSRMV
PVEDWLKTVLLNFLETATKSDDDPPTPGVSALSLED*
back to top

spliced messenger RNA

>Gcaud2570.t1 ID=Gcaud2570.t1|Name=Gcaud2570.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:2855..4645- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCGCCAACCGCGTCGACGCCGTTGAGCAAGCGCAGTCGCAGTC
GGTGGCGTTTCTTCTGCTAGGCGCGCTTTTGGGTGTGGCGTACTCACTAG
GCACGGAGAAGTATATGCGTGCTATGAGACATCCTCATATCTTTGTGCGC
AATGCCATGTTGTGGCTTTCGGCCATGGCGTGGCTTGTTGCCGCTGCCGC
CGTTGCTTGGCTTGCTTCTCGTATATACAACCAGACCGACGGCGGCTTAG
AAGGCTTTGATCGAAGTTTGGGAGTTCTGATCCCGTTTGTTGTTCGCGCC
GATCTGATCGTGGATTGGGCGAAGCGTGTTGCGTGGGCTCTGCTGAATAT
GTCCACTTGGACGCAGGCCACCGTTCAGATACATCGCCTTCTGCATCGCG
CCCCCAACATGCAGCAACTGGTGTCAGTCAATCCAGACGTTTCTTCCATT
ATATCGTTTTCTACAATCACACAAACCCAGCTTGTTCAGTCCGAAGATCA
TTTGTGGACTCAGGATGCACATTCCCTCGTCCACCTATCTGAGCTCATAC
ATCACTTTGAAAAACTTGGTCGCGTCGCTGTATATGCCGTTGCGGTGTTC
TTTGCGTCTCTGCCGGCGACTGTGGCATGGATTTTGTTCGCCGTGTACCA
AATATTTGTTTCTATTCGTTCATCCACCAAAGCGATTGCTCTACTGTACT
TGGTGTCTATTTTTCTCGCTCCGGTTTGCGCAGTGGTGCTTATCATTTCC
GCTCTGTTCTTGTTGGGTGGCGTCGTTACTTTATCCGTTGTCGGCATTAT
AGTACAGTTTTCCGTGTACTGGAGCACTCGAATAATGTATTATATGGTTC
GAGTAACGCTCTCACAAGCATGGGCAGGTTTCCCCAAACTGCACTACCTT
CATATGGGTCATAAGGTCGATTATGACCTTGCGAACGGTCATATGGCGGT
GAGAGGCGCTCGAAATCCAGACGAAGCAGGAATAGCTATGGCACAAATGG
GCAGTCTTCTACCGACTGAACTCGAGTTTATTCTTTCATCTTGGGATGGG
ACTGATCAACGCCGTGGCGACAGACTGAAACCCATCTCCGCTTCCATTTC
CCGACATATTAGGAGTCTGTCTTTCATAGTGGTAACCGCGATCGTCCCCA
AGATCGTTCTGTTCAGTTTCCAGAAAGGATTCATTCGATCCCATCAGAAC
GGGGAGCTCATCATCGCACATCCGATAACTGCAGTGCCCTGGTCTAGTCG
GAGACGGCGCCTGTCCACGTTCTATGCTTTCGCAATGCTGGTGCAGTTGC
AAGTGGAATCTGGTGGGAATGCTTGGTGTCTTCATTCCGCACAGAATCTG
AGTGATTCTGAGTATTCCAGTCGAATATCGGATTTGAAGTGCATTATTGC
AGACGAAGCTTGTACCGCAGTTGATGAACTTATTTCTCGGTTACGAGGTT
CTAGCAAGTACCGGTTGATTCCCACAGGCTTCCCGAGTAGCAGAATGGTT
CCCGTTGAGGACTGGTTGAAAACTGTACTGTTGAACTTCTTGGAGACCGC
CACAAAATCTGATGACGATCCTCCGACACCGGGAGTTAGCGCTCTGTCTC
TGGAAGACTGA
back to top

protein sequence of Gcaud2570.t1

>Gcaud2570.t1 ID=Gcaud2570.t1|Name=Gcaud2570.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=537bp
MSVANRVDAVEQAQSQSVAFLLLGALLGVAYSLGTEKYMRAMRHPHIFVR
NAMLWLSAMAWLVAAAAVAWLASRIYNQTDGGLEGFDRSLGVLIPFVVRA
DLIVDWAKRVAWALLNMSTWTQATVQIHRLLHRAPNMQQLVSVNPDVSSI
ISFSTITQTQLVQSEDHLWTQDAHSLVHLSELIHHFEKLGRVAVYAVAVF
FASLPATVAWILFAVYQIFVSIRSSTKAIALLYLVSIFLAPVCAVVLIIS
ALFLLGGVVTLSVVGIIVQFSVYWSTRIMYYMVRVTLSQAWAGFPKLHYL
HMGHKVDYDLANGHMAVRGARNPDEAGIAMAQMGSLLPTELEFILSSWDG
TDQRRGDRLKPISASISRHIRSLSFIVVTAIVPKIVLFSFQKGFIRSHQN
GELIIAHPITAVPWSSRRRRLSTFYAFAMLVQLQVESGGNAWCLHSAQNL
SDSEYSSRISDLKCIIADEACTAVDELISRLRGSSKYRLIPTGFPSSRMV
PVEDWLKTVLLNFLETATKSDDDPPTPGVSALSLED*
back to top

mRNA from alignment at NODE_1064_length_14381_cov_4.633380:2855..4645-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2570.t1 ID=Gcaud2570.t1|Name=Gcaud2570.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:2855..4645- (Gracilaria caudata M_176_S67 male)
ATGTCCGTCGCCAACCGCGTCGACGCCGTTGAGCAAGCGCAGTCGCAGTC
GGTGGCGTTTCTTCTGCTAGGCGCGCTTTTGGGTGTGGCGTACTCACTAG
GCACGGAGAAGTATATGCGTGCTATGAGACATCCTCATATCTTTGTGCGC
AATGCCATGTTGTGGCTTTCGGCCATGGCGTGGCTTGTTGCCGCTGCCGC
CGTTGCTTGGCTTGCTTCTCGTATATACAACCAGACCGACGGCGGCTTAG
AAGGCTTTGATCGAAGTTTGGGAGTTCTGATCCCGTTTGTTGTTCGCGCC
GATCTGATCGTGGATTGGGCGAAGCGTGTTGCGTGGGCTCTGCTGAATAT
GTCCACTTGGACGCAGGCCACCGTTCAGATACATCGCCTTCTGCATCGCG
CCCCCAACATGCAGCAACTGGTGTCAGTCAATCCAGACGTTTCTTCCATT
ATATCGTTTTCTACAATCACACAAACCCAGCTTGTTCAGTCCGAAGATCA
TTTGTGGACTCAGGATGCACATTCCCTCGTCCACCTATCTGAGCTCATAC
ATCACTTTGAAAAACTTGGTCGCGTCGCTGTATATGCCGTTGCGGTGTTC
TTTGCGTCTCTGCCGGCGACTGTGGCATGGATTTTGTTCGCCGTGTACCA
AATATTTGTTTCTATTCGTTCATCCACCAAAGCGATTGCTCTACTGTACT
TGGTGTCTATTTTTCTCGCTCCGGTTTGCGCAGTGGTGCTTATCATTTCC
GCTCTGTTCTTGTTGGGTGGCGTCGTTACTTTATCCGTTGTCGGCATTAT
AGTACAGTTTTCCGTGTACTGGAGCACTCGAATAATGTATTATATGGTTC
GAGTAACGCTCTCACAAGCATGGGCAGGTTTCCCCAAACTGCACTACCTT
CATATGGGTCATAAGGTCGATTATGACCTTGCGAACGGTCATATGGCGGT
GAGAGGCGCTCGAAATCCAGACGAAGCAGGAATAGCTATGGCACAAATGG
GCAGTCTTCTACCGACTGAACTCGAGTTTATTCTTTCATCTTGGGATGGG
ACTGATCAACGCCGTGGCGACAGACTGAAACCCATCTCCGCTTCCATTTC
CCGACATATTAGGAGTCTGTCTTTCATAGGTAAGGTTCTGGAACCAAGTT
ATTCAAACACCCCGTCTTCTGGTATCAACGACAACACTAGTACTTCAAAT
AGCGCCAGAGTGAGAGTCGGTATGAACTCTGAAACTAATGTAAACAGCAG
TGGTAACCGCGATCGTCCCCAAGATCGTTCTGTTCAGTTTCCAGAAAGGA
TTCATTCGATCCCATCAGAACGGGGAGCTCATCATCGCACATCCGATAAC
TGCAGTGCCCTGGTGCTTAACTCTAGAATACTAGTTTTCATGCGAAGACT
TGGACTAGACTTCTCAGTCAGGTCTAGTCGGAGACGGCGCCTGTCCACGT
TCTATGCTTTCGCAATGCTGGTGCAGTTGCAAGTGGAATCTGGTGGGAAT
GCTTGGTGTCTTCATTCCGCACAGAATCTGAGTGATTCTGAGTATTCCAG
TCGAATATCGGATTTGAAGTGCATTATTGCAGACGAAGCTTGTACCGCAG
TTGATGAACTTATTTCTCGGTTACGAGGTTCTAGCAAGTACCGGTTGATT
CCCACAGGCTTCCCGAGTAGCAGAATGGTTCCCGTTGAGGACTGGTTGAA
AACTGTACTGTTGAACTTCTTGGAGACCGCCACAAAATCTGATGACGATC
CTCCGACACCGGGAGTTAGCGCTCTGTCTCTGGAAGACTGA
back to top

Coding sequence (CDS) from alignment at NODE_1064_length_14381_cov_4.633380:2855..4645-

>Gcaud2570.t1 ID=Gcaud2570.t1|Name=Gcaud2570.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1611bp|location=Sequence derived from alignment at NODE_1064_length_14381_cov_4.633380:2855..4645- (Gracilaria caudata M_176_S67 male)
ATGTCCGTCGCCAACCGCGTCGACGCCGTTGAGCAAGCGCAGTCGCAGTC
GGTGGCGTTTCTTCTGCTAGGCGCGCTTTTGGGTGTGGCGTACTCACTAG
GCACGGAGAAGTATATGCGTGCTATGAGACATCCTCATATCTTTGTGCGC
AATGCCATGTTGTGGCTTTCGGCCATGGCGTGGCTTGTTGCCGCTGCCGC
CGTTGCTTGGCTTGCTTCTCGTATATACAACCAGACCGACGGCGGCTTAG
AAGGCTTTGATCGAAGTTTGGGAGTTCTGATCCCGTTTGTTGTTCGCGCC
GATCTGATCGTGGATTGGGCGAAGCGTGTTGCGTGGGCTCTGCTGAATAT
GTCCACTTGGACGCAGGCCACCGTTCAGATACATCGCCTTCTGCATCGCG
CCCCCAACATGCAGCAACTGGTGTCAGTCAATCCAGACGTTTCTTCCATT
ATATCGTTTTCTACAATCACACAAACCCAGCTTGTTCAGTCCGAAGATCA
TTTGTGGACTCAGGATGCACATTCCCTCGTCCACCTATCTGAGCTCATAC
ATCACTTTGAAAAACTTGGTCGCGTCGCTGTATATGCCGTTGCGGTGTTC
TTTGCGTCTCTGCCGGCGACTGTGGCATGGATTTTGTTCGCCGTGTACCA
AATATTTGTTTCTATTCGTTCATCCACCAAAGCGATTGCTCTACTGTACT
TGGTGTCTATTTTTCTCGCTCCGGTTTGCGCAGTGGTGCTTATCATTTCC
GCTCTGTTCTTGTTGGGTGGCGTCGTTACTTTATCCGTTGTCGGCATTAT
AGTACAGTTTTCCGTGTACTGGAGCACTCGAATAATGTATTATATGGTTC
GAGTAACGCTCTCACAAGCATGGGCAGGTTTCCCCAAACTGCACTACCTT
CATATGGGTCATAAGGTCGATTATGACCTTGCGAACGGTCATATGGCGGT
GAGAGGCGCTCGAAATCCAGACGAAGCAGGAATAGCTATGGCACAAATGG
GCAGTCTTCTACCGACTGAACTCGAGTTTATTCTTTCATCTTGGGATGGG
ACTGATCAACGCCGTGGCGACAGACTGAAACCCATCTCCGCTTCCATTTC
CCGACATATTAGGAGTCTGTCTTTCATAGTGGTAACCGCGATCGTCCCCA
AGATCGTTCTGTTCAGTTTCCAGAAAGGATTCATTCGATCCCATCAGAAC
GGGGAGCTCATCATCGCACATCCGATAACTGCAGTGCCCTGGTCTAGTCG
GAGACGGCGCCTGTCCACGTTCTATGCTTTCGCAATGCTGGTGCAGTTGC
AAGTGGAATCTGGTGGGAATGCTTGGTGTCTTCATTCCGCACAGAATCTG
AGTGATTCTGAGTATTCCAGTCGAATATCGGATTTGAAGTGCATTATTGC
AGACGAAGCTTGTACCGCAGTTGATGAACTTATTTCTCGGTTACGAGGTT
CTAGCAAGTACCGGTTGATTCCCACAGGCTTCCCGAGTAGCAGAATGGTT
CCCGTTGAGGACTGGTTGAAAACTGTACTGTTGAACTTCTTGGAGACCGC
CACAAAATCTGATGACGATCCTCCGACACCGGGAGTTAGCGCTCTGTCTC
TGGAAGACTGA
back to top