Gcaud3001.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3001.t1
Unique NameGcaud3001.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length370
Homology
BLAST of Gcaud3001.t1 vs. uniprot
Match: A0A2V3ITI0_9FLOR (Peroxisomal biogenesis factor 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITI0_9FLOR)

HSP 1 Score: 470 bits (1209), Expect = 3.670e-163
Identity = 237/354 (66.95%), Postives = 287/354 (81.07%), Query Frame = 0
Query:    3 SAPAGNFTSLMRFVRRNSGRITALTLTAGGLVAAYTYFRRQMNTVNSSIEAERAAGARSLRAVFLSNKNTIRTAYVALLPDLGAILAACENIECSAVLGRLRERPGLEEKALLWEKLKIASTTHLVTAIXXXXXXYATVSLQINLLARYTGYYGDAPVQNLPSGDLQPRTSRRFLDFCRCVLIDTNIQEIAKQVERAVRETVKDVRLTAVYDVQRVECLLANCITALHDSEGKTAIAHLPQGWFRAALRTEIDGDGETDNNLRWLHEESLDLCECLDVSRVVENYCFDAVRYVCGKLADEMLSGSAKGLPFAHLLARFEKATKDLCTGEVESMLRNNESGVRFSACVFLSGEKE 356
            SA + +FTSLMRFVRRNSGR+T LTLTAGGLV AY YFR QMNTVNS++EAER AGARSLRAVFL+NKNTI+ AY+ALLP++GAIL+ACE+I+CSA+L RLRERP L+EKA LWE+LKIAS THLVTAI      + T+S+QINLLARY+ YY DAPVQ+LPSGDLQP TS+ FLD CR VL + ++  + KQVE  VR  VKDV+LTAVYD QRVECLL+NCI  L +     +++ LP+ WFR  LRT +  + E + NL WL EESLDLCECLDVS VVE+  FD V ++C +L  EM +GSAKGLPFAHLLARFEK +K L TGE+E+++R+NESGV+F+ACVFLSGEK+
Sbjct:    2 SANSTHFTSLMRFVRRNSGRLTFLTLTAGGLVVAYRYFRTQMNTVNSTLEAERVAGARSLRAVFLANKNTIQKAYMALLPEIGAILSACESIDCSAILKRLRERPPLQEKASLWERLKIASVTHLVTAIFLIVTVHVTISMQINLLARYSAYYADAPVQSLPSGDLQPSTSKSFLDLCRRVLSNADVDGLTKQVEAEVRANVKDVKLTAVYDAQRVECLLSNCIRGLSEESKMHSLSRLPEYWFRNELRT-LREESEREKNLDWLLEESLDLCECLDVSEVVESSSFDVVHHLCEQLGQEMTNGSAKGLPFAHLLARFEKLSKSLFTGEIENVVRDNESGVQFAACVFLSGEKQ 354          
BLAST of Gcaud3001.t1 vs. uniprot
Match: UPI0011827046 (peroxisomal biogenesis factor 3 n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI0011827046)

HSP 1 Score: 59.7 bits (143), Expect = 3.020e-6
Identity = 62/279 (22.22%), Postives = 123/279 (44.09%), Query Frame = 0
Query:    9 FTSLMRFVRRNSGRITALTLTAGGLVAAYTYFRRQMNTVNSSIEAERAAGARSLRAVFLSNKNTIRTAYVALLPDLGAILAACENIECSAVLGRLRERPGLEEKALLWEKLKIASTTHLVTAIXXXXXXYATVSLQINLLARYTGYYGDAPVQNLPSGDLQPRTSRRFLDFCRCVLIDTNIQEIAKQVERAVRETVKDVRLTAVYDVQRVECLLANCITAL----HDSEGKTAIAHLPQGWFRAALRTEIDGDGETDNNLRWLHEESLDLCECLDVSRV 283
            F+S+  F+ R+  +     +  GG+     Y +R++       EA++       +  F S + T     ++L   +   + +  N E   ++ +L+E P  E K  LWE+LK+   T +   +        T+ +Q+N++  Y   + D+  +  P  D   ++  ++L  C    +   ++++ KQ+E+AV+  V+ V L     +Q VE +  +  T L     D +    + H   G       TEID     D  L  + +E++D+ E  +V+ +
Sbjct:    2 FSSIKNFLHRHKKKFIVTGVVVGGIYILTNYAQRKLREWQEK-EAKKFFEMTRKKQHFESTERTCNQTILSLSKIVSESILSLLNTE--EIVQKLQENP--ENKLALWEQLKVMIFTRICVLVYALCILQVTLRVQLNIIGGYL--FKDSVHEEDPLVDSNLQS--KYLSLCHH-FVGRGVEDLIKQIEKAVKRVVEPVVLKKKITLQEVEQMFWSIQTILCTDTADGDPIKKMVHYLVG------HTEID-----DAKLDTIVKETMDILESDEVTSI 259          
BLAST of Gcaud3001.t1 vs. uniprot
Match: A0A6J3CHA2_GALME (Peroxisomal assembly protein PEX3 n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J3CHA2_GALME)

HSP 1 Score: 59.7 bits (143), Expect = 3.040e-6
Identity = 69/305 (22.62%), Postives = 132/305 (43.28%), Query Frame = 0
Query:    9 FTSLMRFVRRNSGRITALTLTAGGLVAAYTYFRRQMNTVNSSIEAERAAGARSLRAVFLSNKNTIRTAYVALLPDLGAILAACENIECSAVLGRLRERPGLEEKALLWEKLKIASTTHLVTAIXXXXXXYATVSLQINLLARYTGYYGDAPVQNLP--SGDLQPRTSRRFLDFCRCVLIDTNIQEIAKQVERAVRETVKDVRLTAVYDVQRVECLLANCITALH----DSEGKTAIAHLPQGWFRAALRTEIDGDGETDNNLRWLHEESLDLCECLDVSRVVENYCFDAVRYVCGKLADEMLSGS 307
            F+S+  F+ R+  +        GGL    +Y +R++       EA++       +  F S + T     ++L   +   +    N E   ++ +L+E P  E K  LWE+LK+   T +   +        T+ +Q+N++  Y   Y D+   + P    DLQ R    +L  C    +   ++++ KQ+E+AV+  V+ V L     +Q VE L  +  T L     D +    + H   G       TEI+     +  L  + +E++D+ E  +V+ +  +    +   V  ++A+  ++ S
Sbjct:    2 FSSIRNFLHRHKRKFIITGAVFGGLYILSSYAQRKLREWQEK-EAKKFFEMTRKKQHFESTERTCNQTILSLSKIVSESILGLLNTE--EIVQKLQENP--ENKLALWEQLKLMIFTRICVLVYALSILQVTLRVQLNIVGGYL--YRDSVNDDDPLIDSDLQAR----YLSLCHH-FVGQGVEDLVKQIEKAVKRVVEPVSLKKKITLQEVEQLFWSIQTILCTDTIDGDPVKKMVHYLVG------HTEIN-----EARLDTMVKETMDILESDEVTSIAMSSVSRSFSSVIDEIANLFVNKS 283          
The following BLAST results are available for this feature:
BLAST of Gcaud3001.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ITI0_9FLOR3.670e-16366.95Peroxisomal biogenesis factor 3 n=1 Tax=Gracilario... [more]
UPI00118270463.020e-622.22peroxisomal biogenesis factor 3 n=1 Tax=Manduca se... [more]
A0A6J3CHA2_GALME3.040e-622.62Peroxisomal assembly protein PEX3 n=1 Tax=Galleria... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006966Peroxin-3PFAMPF04882Peroxin-3coord: 110..151
e-value: 2.8E-7
score: 29.9
IPR006966Peroxin-3PANTHERPTHR28080PEROXISOMAL BIOGENESIS FACTOR 3coord: 14..330
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 32..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 23..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..369
NoneNo IPR availableTMHMMTMhelixcoord: 21..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_222_length_35706_cov_4.342356contigNODE_222_length_35706_cov_4.342356:30696..31805 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3001.t1Gcaud3001.t1Gracilaria caudata M_176_S67 malemRNANODE_222_length_35706_cov_4.342356 30696..31805 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3001.t1 ID=Gcaud3001.t1|Name=Gcaud3001.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MQSAPAGNFTSLMRFVRRNSGRITALTLTAGGLVAAYTYFRRQMNTVNSS
IEAERAAGARSLRAVFLSNKNTIRTAYVALLPDLGAILAACENIECSAVL
GRLRERPGLEEKALLWEKLKIASTTHLVTAIYLVSAVYATVSLQINLLAR
YTGYYGDAPVQNLPSGDLQPRTSRRFLDFCRCVLIDTNIQEIAKQVERAV
RETVKDVRLTAVYDVQRVECLLANCITALHDSEGKTAIAHLPQGWFRAAL
RTEIDGDGETDNNLRWLHEESLDLCECLDVSRVVENYCFDAVRYVCGKLA
DEMLSGSAKGLPFAHLLARFEKATKDLCTGEVESMLRNNESGVRFSACVF
LSGEKEVNRETSSVTTERS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006966Peroxin-3