Gcaud3001.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3001.t1
Unique Name	Gcaud3001.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	370

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:30696..31805 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709198.1
Preferred name	PEX3
PFAMs	Peroxin-3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13336
KEGG TC	3.A.20.1,9.A.17.1
KEGG Pathway	ko04146,map04146
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005783,GO:0005829,GO:0005886,GO:0005887,GO:0006082,GO:0006605,GO:0006612,GO:0006625,GO:0006629,GO:0006631,GO:0006633,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0012505,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016043,GO:0016053,GO:0016557,GO:0017038,GO:0019216,GO:0019222,GO:0019752,GO:0030497,GO:0030674,GO:0031090,GO:0031224,GO:0031226,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031903,GO:0031974,GO:0031981,GO:0032581,GO:0032787,GO:0032991,GO:0032994,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034613,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044085,GO:0044087,GO:0044091,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045033,GO:0045046,GO:0045184,GO:0045834,GO:0046394,GO:0046889,GO:0046890,GO:0046907,GO:0046983,GO:0048308,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060090,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072330,GO:0072594,GO:0072657,GO:0072662,GO:0072663,GO:0080090,GO:0090150,GO:0090153,GO:0090154,GO:0098588,GO:0098805,GO:1901576,GO:1905038,GO:2000303,GO:2000304
Evalue	2.19e-09
EggNOG OGs	KOG4444@1\|root,KOG4444@2759\|Eukaryota
Description	peroxisome organization
COG category	S
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3001	Gcaud3001	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 30696..31805 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3001.t1.start1	Gcaud3001.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 30696..30698 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3001.t1.CDS1	Gcaud3001.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 30696..31805 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3001.t1.exon1	Gcaud3001.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 30696..31805 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3001.t1.stop1	Gcaud3001.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 31803..31805 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3001.t1	Gcaud3001.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 30696..31805 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:30696..31805+
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:30696..31805+

mRNA sequence

>Gcaud3001.t1 ID=Gcaud3001.t1|Name=Gcaud3001.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=370bp
MQSAPAGNFTSLMRFVRRNSGRITALTLTAGGLVAAYTYFRRQMNTVNSS
IEAERAAGARSLRAVFLSNKNTIRTAYVALLPDLGAILAACENIECSAVL
GRLRERPGLEEKALLWEKLKIASTTHLVTAIYLVSAVYATVSLQINLLAR
YTGYYGDAPVQNLPSGDLQPRTSRRFLDFCRCVLIDTNIQEIAKQVERAV
RETVKDVRLTAVYDVQRVECLLANCITALHDSEGKTAIAHLPQGWFRAAL
RTEIDGDGETDNNLRWLHEESLDLCECLDVSRVVENYCFDAVRYVCGKLA
DEMLSGSAKGLPFAHLLARFEKATKDLCTGEVESMLRNNESGVRFSACVF
LSGEKEVNRETSSVTTERS*

spliced messenger RNA

>Gcaud3001.t1 ID=Gcaud3001.t1|Name=Gcaud3001.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:30696..31805+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCCGCGCCGGCGGGGAATTTTACATCGCTGATGCGATTTGTGCG
AAGGAATTCTGGGCGTATCACTGCCCTAACTCTAACCGCTGGGGGTTTAG
TTGCGGCTTACACATATTTCAGAAGGCAGATGAACACTGTGAATTCAAGC
ATTGAAGCCGAACGAGCTGCCGGCGCTCGCAGTCTTCGTGCAGTGTTTCT
CTCGAACAAAAACACGATCCGAACGGCTTACGTGGCTTTGCTACCAGATT
TAGGTGCTATTCTTGCTGCCTGTGAAAACATTGAGTGCTCTGCTGTATTG
GGGAGGTTAAGAGAACGCCCTGGGCTGGAAGAGAAGGCTTTGCTGTGGGA
AAAGCTCAAGATTGCAAGCACAACACATCTTGTAACGGCGATATATCTAG
TTTCGGCTGTATACGCCACTGTCTCGCTTCAGATTAATCTTCTTGCTCGA
TATACCGGCTATTACGGTGATGCCCCAGTTCAAAACCTCCCTAGTGGAGA
TTTGCAACCGAGGACTTCAAGACGCTTTCTTGACTTTTGTCGCTGCGTTC
TGATTGATACCAATATTCAAGAAATCGCAAAGCAAGTGGAACGAGCGGTG
CGGGAAACAGTCAAGGATGTGAGGCTCACCGCCGTGTATGATGTACAGCG
CGTAGAGTGTTTATTGGCAAATTGTATAACTGCATTGCATGATAGCGAAG
GAAAGACTGCCATAGCGCATTTACCTCAGGGCTGGTTCCGTGCCGCGTTG
CGCACAGAGATCGATGGAGACGGAGAAACCGATAACAATCTACGCTGGCT
CCATGAAGAGTCTTTGGATTTGTGCGAATGCCTGGATGTTTCTAGGGTCG
TAGAAAACTATTGCTTTGACGCCGTTCGATATGTGTGTGGAAAACTTGCA
GACGAAATGTTGTCAGGAAGCGCAAAGGGTTTACCTTTCGCACACTTGCT
GGCAAGGTTCGAAAAGGCCACGAAGGATTTATGCACAGGCGAAGTGGAAT
CAATGCTGAGGAACAATGAATCTGGAGTTCGTTTCTCTGCATGCGTCTTT
TTGTCCGGCGAGAAGGAAGTCAACAGAGAAACAAGTTCGGTCACGACTGA
AAGGTCATAG

protein sequence of Gcaud3001.t1

>Gcaud3001.t1 ID=Gcaud3001.t1|Name=Gcaud3001.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MQSAPAGNFTSLMRFVRRNSGRITALTLTAGGLVAAYTYFRRQMNTVNSS
IEAERAAGARSLRAVFLSNKNTIRTAYVALLPDLGAILAACENIECSAVL
GRLRERPGLEEKALLWEKLKIASTTHLVTAIYLVSAVYATVSLQINLLAR
YTGYYGDAPVQNLPSGDLQPRTSRRFLDFCRCVLIDTNIQEIAKQVERAV
RETVKDVRLTAVYDVQRVECLLANCITALHDSEGKTAIAHLPQGWFRAAL
RTEIDGDGETDNNLRWLHEESLDLCECLDVSRVVENYCFDAVRYVCGKLA
DEMLSGSAKGLPFAHLLARFEKATKDLCTGEVESMLRNNESGVRFSACVF
LSGEKEVNRETSSVTTERS*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:30696..31805+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3001.t1 ID=Gcaud3001.t1|Name=Gcaud3001.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:30696..31805+ (Gracilaria caudata M_176_S67 male)
ATGCAGTCCGCGCCGGCGGGGAATTTTACATCGCTGATGCGATTTGTGCG
AAGGAATTCTGGGCGTATCACTGCCCTAACTCTAACCGCTGGGGGTTTAG
TTGCGGCTTACACATATTTCAGAAGGCAGATGAACACTGTGAATTCAAGC
ATTGAAGCCGAACGAGCTGCCGGCGCTCGCAGTCTTCGTGCAGTGTTTCT
CTCGAACAAAAACACGATCCGAACGGCTTACGTGGCTTTGCTACCAGATT
TAGGTGCTATTCTTGCTGCCTGTGAAAACATTGAGTGCTCTGCTGTATTG
GGGAGGTTAAGAGAACGCCCTGGGCTGGAAGAGAAGGCTTTGCTGTGGGA
AAAGCTCAAGATTGCAAGCACAACACATCTTGTAACGGCGATATATCTAG
TTTCGGCTGTATACGCCACTGTCTCGCTTCAGATTAATCTTCTTGCTCGA
TATACCGGCTATTACGGTGATGCCCCAGTTCAAAACCTCCCTAGTGGAGA
TTTGCAACCGAGGACTTCAAGACGCTTTCTTGACTTTTGTCGCTGCGTTC
TGATTGATACCAATATTCAAGAAATCGCAAAGCAAGTGGAACGAGCGGTG
CGGGAAACAGTCAAGGATGTGAGGCTCACCGCCGTGTATGATGTACAGCG
CGTAGAGTGTTTATTGGCAAATTGTATAACTGCATTGCATGATAGCGAAG
GAAAGACTGCCATAGCGCATTTACCTCAGGGCTGGTTCCGTGCCGCGTTG
CGCACAGAGATCGATGGAGACGGAGAAACCGATAACAATCTACGCTGGCT
CCATGAAGAGTCTTTGGATTTGTGCGAATGCCTGGATGTTTCTAGGGTCG
TAGAAAACTATTGCTTTGACGCCGTTCGATATGTGTGTGGAAAACTTGCA
GACGAAATGTTGTCAGGAAGCGCAAAGGGTTTACCTTTCGCACACTTGCT
GGCAAGGTTCGAAAAGGCCACGAAGGATTTATGCACAGGCGAAGTGGAAT
CAATGCTGAGGAACAATGAATCTGGAGTTCGTTTCTCTGCATGCGTCTTT
TTGTCCGGCGAGAAGGAAGTCAACAGAGAAACAAGTTCGGTCACGACTGA
AAGGTCATAG

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:30696..31805+

>Gcaud3001.t1 ID=Gcaud3001.t1|Name=Gcaud3001.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1110bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:30696..31805+ (Gracilaria caudata M_176_S67 male)
ATGCAGTCCGCGCCGGCGGGGAATTTTACATCGCTGATGCGATTTGTGCG
AAGGAATTCTGGGCGTATCACTGCCCTAACTCTAACCGCTGGGGGTTTAG
TTGCGGCTTACACATATTTCAGAAGGCAGATGAACACTGTGAATTCAAGC
ATTGAAGCCGAACGAGCTGCCGGCGCTCGCAGTCTTCGTGCAGTGTTTCT
CTCGAACAAAAACACGATCCGAACGGCTTACGTGGCTTTGCTACCAGATT
TAGGTGCTATTCTTGCTGCCTGTGAAAACATTGAGTGCTCTGCTGTATTG
GGGAGGTTAAGAGAACGCCCTGGGCTGGAAGAGAAGGCTTTGCTGTGGGA
AAAGCTCAAGATTGCAAGCACAACACATCTTGTAACGGCGATATATCTAG
TTTCGGCTGTATACGCCACTGTCTCGCTTCAGATTAATCTTCTTGCTCGA
TATACCGGCTATTACGGTGATGCCCCAGTTCAAAACCTCCCTAGTGGAGA
TTTGCAACCGAGGACTTCAAGACGCTTTCTTGACTTTTGTCGCTGCGTTC
TGATTGATACCAATATTCAAGAAATCGCAAAGCAAGTGGAACGAGCGGTG
CGGGAAACAGTCAAGGATGTGAGGCTCACCGCCGTGTATGATGTACAGCG
CGTAGAGTGTTTATTGGCAAATTGTATAACTGCATTGCATGATAGCGAAG
GAAAGACTGCCATAGCGCATTTACCTCAGGGCTGGTTCCGTGCCGCGTTG
CGCACAGAGATCGATGGAGACGGAGAAACCGATAACAATCTACGCTGGCT
CCATGAAGAGTCTTTGGATTTGTGCGAATGCCTGGATGTTTCTAGGGTCG
TAGAAAACTATTGCTTTGACGCCGTTCGATATGTGTGTGGAAAACTTGCA
GACGAAATGTTGTCAGGAAGCGCAAAGGGTTTACCTTTCGCACACTTGCT
GGCAAGGTTCGAAAAGGCCACGAAGGATTTATGCACAGGCGAAGTGGAAT
CAATGCTGAGGAACAATGAATCTGGAGTTCGTTTCTCTGCATGCGTCTTT
TTGTCCGGCGAGAAGGAAGTCAACAGAGAAACAAGTTCGGTCACGACTGA
AAGGTCATAG