Gcaud2287.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2287.t1
Unique Name	Gcaud2287.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_220_length_36054_cov_4.510163	contig	NODE_220_length_36054_cov_4.510163:9755..11182 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010667163.1
Preferred name	FVE
PFAMs	CAF1C_H4-bd,WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10752
KEGG Pathway	ko04218,map04218
GOs	GO:0000151,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009892,GO:0009987,GO:0010224,GO:0010468,GO:0010605,GO:0010629,GO:0019222,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080008,GO:0090304,GO:1901360,GO:1902494,GO:1990234
Evalue	5.2e-86
EggNOG OGs	KOG0264@1\|root,KOG0264@2759\|Eukaryota,37M78@33090\|Viridiplantae,3GDJ8@35493\|Streptophyta
Description	WD-40 repeat-containing protein
COG category	B
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2287	Gcaud2287	Gracilaria caudata M_176_S67 male	gene	NODE_220_length_36054_cov_4.510163 9755..11182 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2287.t1.stop1	Gcaud2287.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_220_length_36054_cov_4.510163 9755..9757 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2287.t1.CDS1	Gcaud2287.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 9755..11182 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2287.t1.exon1	Gcaud2287.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 9755..11182 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2287.t1.start1	Gcaud2287.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_220_length_36054_cov_4.510163 11180..11182 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2287.t1	Gcaud2287.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_220_length_36054_cov_4.510163 9755..11182 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_220_length_36054_cov_4.510163:9755..11182-
coding sequence from alignment at NODE_220_length_36054_cov_4.510163:9755..11182-

mRNA sequence

>Gcaud2287.t1 ID=Gcaud2287.t1|Name=Gcaud2287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=476bp
MVANASSDARGKRTIPVGSLNRNTRFKLWKEQDVPILYDWISSRPLIWPS
VAVQWGAPIEDSRKERAPNNHTFSNRAIYLSERTGDATRDPNTLLQFDVR
VIHELTNKPSEVARPWADEAVVTDRSDSNSSRDFVLRKRILHPGEVNRIR
LISRDVVVTHTDSPDLFVWDFKRQPDRKPREVSPSSPDCTLVGHASNAEY
AIDVAGYPGTDEDKWVASGGSDSSVLLWRMEDYQSFGQELKPFVRMTGSN
GISRPAGHTEHIEDVSFCGKQRNVICSVGRDEALFLWDVRAPQSPTTYVR
KAHNGDINCCDYGGLCENHIVTGGEDKQVRLWDTRKLKGSEGEPQPLREL
RGHTEAITNLMWNRNVENVLASGAVDGQVLIWRIGDDHSHRQLDSAYYDI
SPELLFKHIGHSINDENIWDLQWLPSSSDPWCIASLSETGSGGSTLQVWR
ISDIIHRPAEEVAADLKRYSRSREQ*

spliced messenger RNA

>Gcaud2287.t1 ID=Gcaud2287.t1|Name=Gcaud2287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:9755..11182- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGCAAACGCCTCATCCGATGCGCGAGGGAAGCGAACAATTCCAGT
CGGTTCGCTGAACCGAAACACTCGTTTCAAACTCTGGAAAGAGCAGGATG
TGCCCATTTTGTACGACTGGATTTCGTCTCGCCCTCTCATCTGGCCCAGC
GTTGCCGTCCAGTGGGGCGCACCAATTGAGGATTCTCGAAAGGAGCGTGC
CCCGAACAACCATACGTTTTCAAATAGAGCCATTTACCTCTCTGAACGAA
CTGGAGATGCCACAAGAGATCCGAACACCCTGCTTCAATTCGACGTAAGA
GTTATCCATGAGTTAACCAACAAACCCTCAGAGGTAGCGCGTCCATGGGC
CGATGAAGCTGTCGTTACAGATCGATCAGACTCAAATTCTTCCCGCGATT
TTGTACTGCGGAAAAGAATACTTCACCCCGGTGAAGTAAATCGCATACGA
CTCATATCCCGGGATGTAGTTGTCACCCACACAGACAGCCCCGATCTGTT
CGTATGGGACTTCAAGAGACAACCGGATCGAAAACCTCGCGAAGTTTCCC
CGAGCTCTCCTGACTGCACTCTTGTGGGTCATGCAAGTAATGCTGAATAC
GCGATTGACGTTGCTGGATACCCAGGCACCGATGAAGACAAGTGGGTAGC
AAGCGGGGGAAGTGACAGTTCTGTGCTTTTGTGGCGCATGGAAGATTATC
AGAGTTTTGGACAGGAGTTGAAACCATTCGTTCGCATGACGGGAAGTAAC
GGTATCAGTAGGCCAGCCGGGCACACGGAACACATAGAAGATGTGAGCTT
CTGCGGAAAGCAAAGAAATGTCATATGCTCTGTTGGGCGGGATGAGGCTC
TGTTCCTGTGGGACGTACGTGCGCCTCAGAGCCCGACGACGTACGTACGC
AAAGCTCACAATGGAGACATAAACTGTTGCGACTATGGGGGACTTTGCGA
GAACCACATTGTTACAGGTGGTGAAGATAAACAAGTACGACTTTGGGACA
CGCGAAAACTAAAAGGCTCCGAGGGAGAGCCACAACCGCTCCGAGAGCTT
CGTGGTCATACAGAAGCAATAACAAACTTAATGTGGAATAGAAATGTCGA
GAACGTCCTTGCCTCCGGAGCAGTTGACGGCCAAGTGCTAATCTGGAGAA
TTGGCGATGATCATTCACATCGACAATTAGATTCTGCATATTATGATATC
AGTCCAGAGCTACTTTTTAAACATATAGGACACAGTATCAATGACGAAAA
TATTTGGGACCTCCAATGGCTACCTTCGAGTTCTGATCCATGGTGTATAG
CGTCCCTCAGTGAGACTGGTTCTGGAGGTTCAACACTCCAAGTTTGGAGA
ATCTCTGATATAATCCACAGACCAGCGGAGGAAGTAGCGGCAGACCTTAA
GCGTTACTCAAGAAGCAGAGAGCAGTAG

protein sequence of Gcaud2287.t1

>Gcaud2287.t1 ID=Gcaud2287.t1|Name=Gcaud2287.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=476bp
MVANASSDARGKRTIPVGSLNRNTRFKLWKEQDVPILYDWISSRPLIWPS
VAVQWGAPIEDSRKERAPNNHTFSNRAIYLSERTGDATRDPNTLLQFDVR
VIHELTNKPSEVARPWADEAVVTDRSDSNSSRDFVLRKRILHPGEVNRIR
LISRDVVVTHTDSPDLFVWDFKRQPDRKPREVSPSSPDCTLVGHASNAEY
AIDVAGYPGTDEDKWVASGGSDSSVLLWRMEDYQSFGQELKPFVRMTGSN
GISRPAGHTEHIEDVSFCGKQRNVICSVGRDEALFLWDVRAPQSPTTYVR
KAHNGDINCCDYGGLCENHIVTGGEDKQVRLWDTRKLKGSEGEPQPLREL
RGHTEAITNLMWNRNVENVLASGAVDGQVLIWRIGDDHSHRQLDSAYYDI
SPELLFKHIGHSINDENIWDLQWLPSSSDPWCIASLSETGSGGSTLQVWR
ISDIIHRPAEEVAADLKRYSRSREQ*

mRNA from alignment at NODE_220_length_36054_cov_4.510163:9755..11182-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2287.t1 ID=Gcaud2287.t1|Name=Gcaud2287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:9755..11182- (Gracilaria caudata M_176_S67 male)
ATGGTAGCAAACGCCTCATCCGATGCGCGAGGGAAGCGAACAATTCCAGT
CGGTTCGCTGAACCGAAACACTCGTTTCAAACTCTGGAAAGAGCAGGATG
TGCCCATTTTGTACGACTGGATTTCGTCTCGCCCTCTCATCTGGCCCAGC
GTTGCCGTCCAGTGGGGCGCACCAATTGAGGATTCTCGAAAGGAGCGTGC
CCCGAACAACCATACGTTTTCAAATAGAGCCATTTACCTCTCTGAACGAA
CTGGAGATGCCACAAGAGATCCGAACACCCTGCTTCAATTCGACGTAAGA
GTTATCCATGAGTTAACCAACAAACCCTCAGAGGTAGCGCGTCCATGGGC
CGATGAAGCTGTCGTTACAGATCGATCAGACTCAAATTCTTCCCGCGATT
TTGTACTGCGGAAAAGAATACTTCACCCCGGTGAAGTAAATCGCATACGA
CTCATATCCCGGGATGTAGTTGTCACCCACACAGACAGCCCCGATCTGTT
CGTATGGGACTTCAAGAGACAACCGGATCGAAAACCTCGCGAAGTTTCCC
CGAGCTCTCCTGACTGCACTCTTGTGGGTCATGCAAGTAATGCTGAATAC
GCGATTGACGTTGCTGGATACCCAGGCACCGATGAAGACAAGTGGGTAGC
AAGCGGGGGAAGTGACAGTTCTGTGCTTTTGTGGCGCATGGAAGATTATC
AGAGTTTTGGACAGGAGTTGAAACCATTCGTTCGCATGACGGGAAGTAAC
GGTATCAGTAGGCCAGCCGGGCACACGGAACACATAGAAGATGTGAGCTT
CTGCGGAAAGCAAAGAAATGTCATATGCTCTGTTGGGCGGGATGAGGCTC
TGTTCCTGTGGGACGTACGTGCGCCTCAGAGCCCGACGACGTACGTACGC
AAAGCTCACAATGGAGACATAAACTGTTGCGACTATGGGGGACTTTGCGA
GAACCACATTGTTACAGGTGGTGAAGATAAACAAGTACGACTTTGGGACA
CGCGAAAACTAAAAGGCTCCGAGGGAGAGCCACAACCGCTCCGAGAGCTT
CGTGGTCATACAGAAGCAATAACAAACTTAATGTGGAATAGAAATGTCGA
GAACGTCCTTGCCTCCGGAGCAGTTGACGGCCAAGTGCTAATCTGGAGAA
TTGGCGATGATCATTCACATCGACAATTAGATTCTGCATATTATGATATC
AGTCCAGAGCTACTTTTTAAACATATAGGACACAGTATCAATGACGAAAA
TATTTGGGACCTCCAATGGCTACCTTCGAGTTCTGATCCATGGTGTATAG
CGTCCCTCAGTGAGACTGGTTCTGGAGGTTCAACACTCCAAGTTTGGAGA
ATCTCTGATATAATCCACAGACCAGCGGAGGAAGTAGCGGCAGACCTTAA
GCGTTACTCAAGAAGCAGAGAGCAGTAG

Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:9755..11182-

>Gcaud2287.t1 ID=Gcaud2287.t1|Name=Gcaud2287.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1428bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:9755..11182- (Gracilaria caudata M_176_S67 male)
ATGGTAGCAAACGCCTCATCCGATGCGCGAGGGAAGCGAACAATTCCAGT
CGGTTCGCTGAACCGAAACACTCGTTTCAAACTCTGGAAAGAGCAGGATG
TGCCCATTTTGTACGACTGGATTTCGTCTCGCCCTCTCATCTGGCCCAGC
GTTGCCGTCCAGTGGGGCGCACCAATTGAGGATTCTCGAAAGGAGCGTGC
CCCGAACAACCATACGTTTTCAAATAGAGCCATTTACCTCTCTGAACGAA
CTGGAGATGCCACAAGAGATCCGAACACCCTGCTTCAATTCGACGTAAGA
GTTATCCATGAGTTAACCAACAAACCCTCAGAGGTAGCGCGTCCATGGGC
CGATGAAGCTGTCGTTACAGATCGATCAGACTCAAATTCTTCCCGCGATT
TTGTACTGCGGAAAAGAATACTTCACCCCGGTGAAGTAAATCGCATACGA
CTCATATCCCGGGATGTAGTTGTCACCCACACAGACAGCCCCGATCTGTT
CGTATGGGACTTCAAGAGACAACCGGATCGAAAACCTCGCGAAGTTTCCC
CGAGCTCTCCTGACTGCACTCTTGTGGGTCATGCAAGTAATGCTGAATAC
GCGATTGACGTTGCTGGATACCCAGGCACCGATGAAGACAAGTGGGTAGC
AAGCGGGGGAAGTGACAGTTCTGTGCTTTTGTGGCGCATGGAAGATTATC
AGAGTTTTGGACAGGAGTTGAAACCATTCGTTCGCATGACGGGAAGTAAC
GGTATCAGTAGGCCAGCCGGGCACACGGAACACATAGAAGATGTGAGCTT
CTGCGGAAAGCAAAGAAATGTCATATGCTCTGTTGGGCGGGATGAGGCTC
TGTTCCTGTGGGACGTACGTGCGCCTCAGAGCCCGACGACGTACGTACGC
AAAGCTCACAATGGAGACATAAACTGTTGCGACTATGGGGGACTTTGCGA
GAACCACATTGTTACAGGTGGTGAAGATAAACAAGTACGACTTTGGGACA
CGCGAAAACTAAAAGGCTCCGAGGGAGAGCCACAACCGCTCCGAGAGCTT
CGTGGTCATACAGAAGCAATAACAAACTTAATGTGGAATAGAAATGTCGA
GAACGTCCTTGCCTCCGGAGCAGTTGACGGCCAAGTGCTAATCTGGAGAA
TTGGCGATGATCATTCACATCGACAATTAGATTCTGCATATTATGATATC
AGTCCAGAGCTACTTTTTAAACATATAGGACACAGTATCAATGACGAAAA
TATTTGGGACCTCCAATGGCTACCTTCGAGTTCTGATCCATGGTGTATAG
CGTCCCTCAGTGAGACTGGTTCTGGAGGTTCAACACTCCAAGTTTGGAGA
ATCTCTGATATAATCCACAGACCAGCGGAGGAAGTAGCGGCAGACCTTAA
GCGTTACTCAAGAAGCAGAGAGCAGTAG