Gcaud9346.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9346.t1
Unique NameGcaud9346.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2185_length_6534_cov_3.538414contigNODE_2185_length_6534_cov_3.538414:3222..4061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9346Gcaud9346Gracilaria caudata M_176_S67 malegeneNODE_2185_length_6534_cov_3.538414 3222..6077 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9346.t1.stop1Gcaud9346.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2185_length_6534_cov_3.538414 3222..3224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9346.t1.CDS1Gcaud9346.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2185_length_6534_cov_3.538414 3222..4061 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9346.t1.exon1Gcaud9346.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2185_length_6534_cov_3.538414 3222..4061 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9346.t1.start1Gcaud9346.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2185_length_6534_cov_3.538414 4059..4061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9346.t1Gcaud9346.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2185_length_6534_cov_3.538414 3222..4061 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9346.t1 ID=Gcaud9346.t1|Name=Gcaud9346.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=280bp
LSYAAILRSKKPTGRPLSVSSRSNSEGAVSPAENENDNSTNQGPSHSSGS
LKDKDKGGKKKKSSGARNGHSTDGLEKSYGANGSANALVRVSSKSSTGSG
GGQPMEGSTREVSSKAKPIIENSRAHSVWANKPKSLFQPAPATVAVRPTT
PQQAVKTQKVTSPVSSHEEEKDNAAENGKAQLLNSVIERSDHDEAEDKTK
SASPNGSVSSDVNAVSNEVAREQSDDKHAITSSKDKGALTGDQTSHASAK
GAWAAGGPRSWPKPRNNVKVAKNTTVSES*
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spliced messenger RNA

>Gcaud9346.t1 ID=Gcaud9346.t1|Name=Gcaud9346.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_2185_length_6534_cov_3.538414:3222..4061- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCCTATGCCGCAATTCTTCGATCAAAGAAACCTACCGGCCGTCCACT
AAGCGTTTCTTCACGGTCGAATTCTGAAGGAGCTGTCTCGCCTGCGGAAA
ACGAAAATGATAATTCTACGAATCAAGGTCCTTCGCACTCCAGCGGCTCT
TTGAAGGATAAAGATAAAGGTGGAAAGAAGAAGAAGAGCAGTGGAGCACG
CAACGGACATTCTACGGACGGCCTCGAAAAGAGCTATGGAGCGAATGGAT
CTGCGAACGCCCTGGTAAGGGTGAGCAGTAAGTCAAGCACGGGCTCTGGA
GGCGGACAACCAATGGAAGGCTCAACAAGAGAAGTCTCATCGAAGGCAAA
GCCCATCATTGAAAACAGTCGTGCACACTCTGTGTGGGCGAATAAGCCAA
AGTCGTTGTTTCAGCCTGCCCCGGCGACTGTAGCGGTACGCCCTACTACC
CCACAACAAGCGGTGAAAACGCAGAAAGTCACCTCTCCAGTCTCATCGCA
TGAGGAGGAGAAGGACAACGCAGCGGAAAATGGTAAAGCTCAATTGCTGA
ACTCTGTGATTGAGAGAAGCGACCACGATGAAGCAGAGGACAAGACAAAA
AGTGCTTCGCCGAATGGTTCTGTTAGTTCAGACGTTAACGCAGTCAGCAA
TGAAGTGGCACGAGAACAGTCGGACGACAAGCATGCGATAACCAGCTCAA
AGGACAAAGGTGCTCTCACTGGAGATCAAACGTCTCACGCGTCAGCAAAA
GGAGCCTGGGCGGCTGGAGGGCCACGTTCATGGCCAAAGCCAAGAAACAA
TGTGAAGGTGGCGAAAAACACCACGGTATCTGAGTCGTAG
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protein sequence of Gcaud9346.t1

>Gcaud9346.t1 ID=Gcaud9346.t1|Name=Gcaud9346.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
LSYAAILRSKKPTGRPLSVSSRSNSEGAVSPAENENDNSTNQGPSHSSGS
LKDKDKGGKKKKSSGARNGHSTDGLEKSYGANGSANALVRVSSKSSTGSG
GGQPMEGSTREVSSKAKPIIENSRAHSVWANKPKSLFQPAPATVAVRPTT
PQQAVKTQKVTSPVSSHEEEKDNAAENGKAQLLNSVIERSDHDEAEDKTK
SASPNGSVSSDVNAVSNEVAREQSDDKHAITSSKDKGALTGDQTSHASAK
GAWAAGGPRSWPKPRNNVKVAKNTTVSES*
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mRNA from alignment at NODE_2185_length_6534_cov_3.538414:3222..4061-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9346.t1 ID=Gcaud9346.t1|Name=Gcaud9346.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_2185_length_6534_cov_3.538414:3222..4061- (Gracilaria caudata M_176_S67 male)
CTGTCCTATGCCGCAATTCTTCGATCAAAGAAACCTACCGGCCGTCCACT
AAGCGTTTCTTCACGGTCGAATTCTGAAGGAGCTGTCTCGCCTGCGGAAA
ACGAAAATGATAATTCTACGAATCAAGGTCCTTCGCACTCCAGCGGCTCT
TTGAAGGATAAAGATAAAGGTGGAAAGAAGAAGAAGAGCAGTGGAGCACG
CAACGGACATTCTACGGACGGCCTCGAAAAGAGCTATGGAGCGAATGGAT
CTGCGAACGCCCTGGTAAGGGTGAGCAGTAAGTCAAGCACGGGCTCTGGA
GGCGGACAACCAATGGAAGGCTCAACAAGAGAAGTCTCATCGAAGGCAAA
GCCCATCATTGAAAACAGTCGTGCACACTCTGTGTGGGCGAATAAGCCAA
AGTCGTTGTTTCAGCCTGCCCCGGCGACTGTAGCGGTACGCCCTACTACC
CCACAACAAGCGGTGAAAACGCAGAAAGTCACCTCTCCAGTCTCATCGCA
TGAGGAGGAGAAGGACAACGCAGCGGAAAATGGTAAAGCTCAATTGCTGA
ACTCTGTGATTGAGAGAAGCGACCACGATGAAGCAGAGGACAAGACAAAA
AGTGCTTCGCCGAATGGTTCTGTTAGTTCAGACGTTAACGCAGTCAGCAA
TGAAGTGGCACGAGAACAGTCGGACGACAAGCATGCGATAACCAGCTCAA
AGGACAAAGGTGCTCTCACTGGAGATCAAACGTCTCACGCGTCAGCAAAA
GGAGCCTGGGCGGCTGGAGGGCCACGTTCATGGCCAAAGCCAAGAAACAA
TGTGAAGGTGGCGAAAAACACCACGGTATCTGAGTCGTAG
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Coding sequence (CDS) from alignment at NODE_2185_length_6534_cov_3.538414:3222..4061-

>Gcaud9346.t1 ID=Gcaud9346.t1|Name=Gcaud9346.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=840bp|location=Sequence derived from alignment at NODE_2185_length_6534_cov_3.538414:3222..4061- (Gracilaria caudata M_176_S67 male)
CTGTCCTATGCCGCAATTCTTCGATCAAAGAAACCTACCGGCCGTCCACT
AAGCGTTTCTTCACGGTCGAATTCTGAAGGAGCTGTCTCGCCTGCGGAAA
ACGAAAATGATAATTCTACGAATCAAGGTCCTTCGCACTCCAGCGGCTCT
TTGAAGGATAAAGATAAAGGTGGAAAGAAGAAGAAGAGCAGTGGAGCACG
CAACGGACATTCTACGGACGGCCTCGAAAAGAGCTATGGAGCGAATGGAT
CTGCGAACGCCCTGGTAAGGGTGAGCAGTAAGTCAAGCACGGGCTCTGGA
GGCGGACAACCAATGGAAGGCTCAACAAGAGAAGTCTCATCGAAGGCAAA
GCCCATCATTGAAAACAGTCGTGCACACTCTGTGTGGGCGAATAAGCCAA
AGTCGTTGTTTCAGCCTGCCCCGGCGACTGTAGCGGTACGCCCTACTACC
CCACAACAAGCGGTGAAAACGCAGAAAGTCACCTCTCCAGTCTCATCGCA
TGAGGAGGAGAAGGACAACGCAGCGGAAAATGGTAAAGCTCAATTGCTGA
ACTCTGTGATTGAGAGAAGCGACCACGATGAAGCAGAGGACAAGACAAAA
AGTGCTTCGCCGAATGGTTCTGTTAGTTCAGACGTTAACGCAGTCAGCAA
TGAAGTGGCACGAGAACAGTCGGACGACAAGCATGCGATAACCAGCTCAA
AGGACAAAGGTGCTCTCACTGGAGATCAAACGTCTCACGCGTCAGCAAAA
GGAGCCTGGGCGGCTGGAGGGCCACGTTCATGGCCAAAGCCAAGAAACAA
TGTGAAGGTGGCGAAAAACACCACGGTATCTGAGTCGTAG
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