Gcaud9346.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9346.t1
Unique Name	Gcaud9346.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	280

Homology

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BLAST of Gcaud9346.t1 vs. uniprot
Match: R7QBN0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBN0_CHOCR)

HSP 1 Score: 77.4 bits (189), Expect = 2.160e-12
Identity = 88/274 (32.12%), Postives = 140/274 (51.09%), Query Frame = 0

Query:    1 LSYAAILRSKKPTGRPLSVSSRSNSEGAVSPAENEXXXXXXQGPSHSSGSLKDKDKGGKKKKSSGARNGHSTDGLEKSYGANGSANALVR-VSSKSSTGSGGGQPMEGSTREVSS-KAKPIIENSRAHSVWANKPKSLFQPAPATVAVRPTTPQQAVKTQKVTSPVSSHEEEKDNAAENGKAQLL--NSVIERSDHDEAEDKTKSASPNGSVSSDVNAVS--NEVAREQSDDKHAITSSK-DKGALTGDQTSHASAKGAWAAGGPRSWPKPRNN 267
            +SYAAILRSKKP+ RP SVS +     + S A++        G     G +  KD+  +++K++  R G + + + +  G+N  +++  +  S +SST +     ++  TR++ + KAK   E +R +SVWANKPKSLFQ A     +R +      + +K  SP+S  E++       G+ ++L  N   E +  +         S N     DVN VS    +A   S+ + +  S++ D+    G QT+   AKGAWA GGP+ WPK   N
Sbjct:  256 MSYAAILRSKKPS-RP-SVSIQLPRMRSDSSAKSGNTLSSGDGSDGILGQI-GKDRNARRRKATSLRIGQTVETVMEGDGSNIQSSSTDKSASERSSTAN-----VQLGTRDLDTVKAKAHSEAARPNSVWANKPKSLFQAASVVPGIRSSLGSAVGEVRKAISPISFQEDDVGGEKLEGQNRMLDVNGQGESASVETQGTAVTDVSSNAEDIGDVNQVSLRKGLASGASEPESSTKSNRVDQAGANGKQTN---AKGAWAMGGPKGWPKNHGN 518

The following BLAST results are available for this feature:

BLAST of Gcaud9346.t1 vs. uniprot

BLAST of Gcaud9346.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QBN0_CHOCR	2.160e-12	32.12	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..162

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2185_length_6534_cov_3.538414	contig	NODE_2185_length_6534_cov_3.538414:3222..4061 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9346.t1	Gcaud9346.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2185_length_6534_cov_3.538414 3222..4061 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9346.t1 ID=Gcaud9346.t1|Name=Gcaud9346.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
LSYAAILRSKKPTGRPLSVSSRSNSEGAVSPAENENDNSTNQGPSHSSGS
LKDKDKGGKKKKSSGARNGHSTDGLEKSYGANGSANALVRVSSKSSTGSG
GGQPMEGSTREVSSKAKPIIENSRAHSVWANKPKSLFQPAPATVAVRPTT
PQQAVKTQKVTSPVSSHEEEKDNAAENGKAQLLNSVIERSDHDEAEDKTK
SASPNGSVSSDVNAVSNEVAREQSDDKHAITSSKDKGALTGDQTSHASAK
GAWAAGGPRSWPKPRNNVKVAKNTTVSES*