Gcaud171.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud171.t1
Unique Name	Gcaud171.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	345

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2096_length_6863_cov_6.957177	contig	NODE_2096_length_6863_cov_6.957177:1580..2614 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud171	Gcaud171	Gracilaria caudata M_176_S67 male	gene	NODE_2096_length_6863_cov_6.957177 1580..2614 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud171.t1.CDS1	Gcaud171.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2096_length_6863_cov_6.957177 1580..2614 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud171.t1.exon1	Gcaud171.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2096_length_6863_cov_6.957177 1580..2614 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud171.t1.start1	Gcaud171.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2096_length_6863_cov_6.957177 2612..2614 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud171.t1	Gcaud171.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2096_length_6863_cov_6.957177 1580..2614 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2096_length_6863_cov_6.957177:1580..2614-
coding sequence from alignment at NODE_2096_length_6863_cov_6.957177:1580..2614-

mRNA sequence

>Gcaud171.t1 ID=Gcaud171.t1|Name=Gcaud171.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp
MDRKEKKKRVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEIT
RLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEVDGRVECIRMNG
NELKILYRKTDGMHVVIYNRKFGSLRPPVSVGEFRRAAVSKDGQIVLFAD
RDVVKKWDAASGAVTDIGSVERWIVCICLSEDARWVACGLREVGKVVVWD
LQCGGEPRELETGREVHVGFVAVSAIGRKVVCRLSDDTIRIWNLDSGKAI
CEALEGGNEYLTSLTVSENGELIASGSGDGTIRVWKAKTGERMNFVNVDY
SIRNVAFGENGKMILWDAKGAFGLWDHEKGDVSKTVTGDAADATF

spliced messenger RNA

>Gcaud171.t1 ID=Gcaud171.t1|Name=Gcaud171.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_2096_length_6863_cov_6.957177:1580..2614- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGGAAGGAGAAGAAGAAGAGGGTACTGGAGGTGATTGCACAGGC
AGCGCGACTTAGCCAGCATGCTGTGGCACGAAACCCGAAGGAGGTATATT
TTCAACTCTATGGACGTCTGGTAGGGTATTCGAATCAATGCGAGATTACT
CGACTGTTTTTGGAGGAAGTAGCGCAGGTTGCAGAGAACGCAGCTGGACC
GTGGGCGAAGGCCAGAAGAGGGTTCCTGAAAGGGGCAGGCGGGGCCATGT
TGGAGAGCTTTGAAGTGGATGGCAGAGTGGAATGTATTCGGATGAATGGG
AATGAGCTAAAGATCCTCTACCGCAAGACAGACGGCATGCATGTAGTGAT
ATACAACCGCAAATTCGGCAGTCTACGGCCACCTGTGTCCGTAGGGGAGT
TTAGGAGAGCGGCAGTGTCAAAGGATGGACAAATAGTTTTATTCGCGGAC
CGTGATGTTGTGAAGAAGTGGGACGCCGCAAGCGGGGCAGTGACTGATAT
AGGAAGTGTTGAGAGGTGGATTGTGTGTATTTGCTTGAGTGAGGATGCGC
GATGGGTTGCATGTGGGCTTCGAGAGGTTGGCAAGGTGGTGGTCTGGGAC
CTGCAGTGCGGTGGCGAGCCTCGTGAACTTGAGACTGGGAGAGAAGTGCA
TGTTGGTTTTGTTGCCGTTAGTGCGATTGGGAGAAAGGTTGTGTGTCGGT
TGAGTGACGACACGATTCGGATCTGGAACTTAGACAGCGGGAAAGCGATC
TGTGAAGCACTGGAAGGAGGTAATGAGTATTTGACATCGTTGACCGTCAG
TGAGAATGGGGAATTGATTGCGTCTGGATCTGGCGATGGCACTATTCGCG
TGTGGAAGGCGAAGACCGGGGAACGCATGAATTTTGTGAATGTTGATTAT
TCGATAAGAAATGTGGCGTTCGGAGAAAACGGGAAGATGATTTTATGGGA
TGCGAAAGGAGCGTTTGGATTGTGGGACCATGAAAAGGGGGACGTTTCGA
AAACAGTGACTGGTGATGCTGCGGACGCTACGTTC

protein sequence of Gcaud171.t1

>Gcaud171.t1 ID=Gcaud171.t1|Name=Gcaud171.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MDRKEKKKRVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEIT
RLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEVDGRVECIRMNG
NELKILYRKTDGMHVVIYNRKFGSLRPPVSVGEFRRAAVSKDGQIVLFAD
RDVVKKWDAASGAVTDIGSVERWIVCICLSEDARWVACGLREVGKVVVWD
LQCGGEPRELETGREVHVGFVAVSAIGRKVVCRLSDDTIRIWNLDSGKAI
CEALEGGNEYLTSLTVSENGELIASGSGDGTIRVWKAKTGERMNFVNVDY
SIRNVAFGENGKMILWDAKGAFGLWDHEKGDVSKTVTGDAADATF

mRNA from alignment at NODE_2096_length_6863_cov_6.957177:1580..2614-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud171.t1 ID=Gcaud171.t1|Name=Gcaud171.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_2096_length_6863_cov_6.957177:1580..2614- (Gracilaria caudata M_176_S67 male)
ATGGATCGGAAGGAGAAGAAGAAGAGGGTACTGGAGGTGATTGCACAGGC
AGCGCGACTTAGCCAGCATGCTGTGGCACGAAACCCGAAGGAGGTATATT
TTCAACTCTATGGACGTCTGGTAGGGTATTCGAATCAATGCGAGATTACT
CGACTGTTTTTGGAGGAAGTAGCGCAGGTTGCAGAGAACGCAGCTGGACC
GTGGGCGAAGGCCAGAAGAGGGTTCCTGAAAGGGGCAGGCGGGGCCATGT
TGGAGAGCTTTGAAGTGGATGGCAGAGTGGAATGTATTCGGATGAATGGG
AATGAGCTAAAGATCCTCTACCGCAAGACAGACGGCATGCATGTAGTGAT
ATACAACCGCAAATTCGGCAGTCTACGGCCACCTGTGTCCGTAGGGGAGT
TTAGGAGAGCGGCAGTGTCAAAGGATGGACAAATAGTTTTATTCGCGGAC
CGTGATGTTGTGAAGAAGTGGGACGCCGCAAGCGGGGCAGTGACTGATAT
AGGAAGTGTTGAGAGGTGGATTGTGTGTATTTGCTTGAGTGAGGATGCGC
GATGGGTTGCATGTGGGCTTCGAGAGGTTGGCAAGGTGGTGGTCTGGGAC
CTGCAGTGCGGTGGCGAGCCTCGTGAACTTGAGACTGGGAGAGAAGTGCA
TGTTGGTTTTGTTGCCGTTAGTGCGATTGGGAGAAAGGTTGTGTGTCGGT
TGAGTGACGACACGATTCGGATCTGGAACTTAGACAGCGGGAAAGCGATC
TGTGAAGCACTGGAAGGAGGTAATGAGTATTTGACATCGTTGACCGTCAG
TGAGAATGGGGAATTGATTGCGTCTGGATCTGGCGATGGCACTATTCGCG
TGTGGAAGGCGAAGACCGGGGAACGCATGAATTTTGTGAATGTTGATTAT
TCGATAAGAAATGTGGCGTTCGGAGAAAACGGGAAGATGATTTTATGGGA
TGCGAAAGGAGCGTTTGGATTGTGGGACCATGAAAAGGGGGACGTTTCGA
AAACAGTGACTGGTGATGCTGCGGACGCTACGTTC

Coding sequence (CDS) from alignment at NODE_2096_length_6863_cov_6.957177:1580..2614-

>Gcaud171.t1 ID=Gcaud171.t1|Name=Gcaud171.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1035bp|location=Sequence derived from alignment at NODE_2096_length_6863_cov_6.957177:1580..2614- (Gracilaria caudata M_176_S67 male)
ATGGATCGGAAGGAGAAGAAGAAGAGGGTACTGGAGGTGATTGCACAGGC
AGCGCGACTTAGCCAGCATGCTGTGGCACGAAACCCGAAGGAGGTATATT
TTCAACTCTATGGACGTCTGGTAGGGTATTCGAATCAATGCGAGATTACT
CGACTGTTTTTGGAGGAAGTAGCGCAGGTTGCAGAGAACGCAGCTGGACC
GTGGGCGAAGGCCAGAAGAGGGTTCCTGAAAGGGGCAGGCGGGGCCATGT
TGGAGAGCTTTGAAGTGGATGGCAGAGTGGAATGTATTCGGATGAATGGG
AATGAGCTAAAGATCCTCTACCGCAAGACAGACGGCATGCATGTAGTGAT
ATACAACCGCAAATTCGGCAGTCTACGGCCACCTGTGTCCGTAGGGGAGT
TTAGGAGAGCGGCAGTGTCAAAGGATGGACAAATAGTTTTATTCGCGGAC
CGTGATGTTGTGAAGAAGTGGGACGCCGCAAGCGGGGCAGTGACTGATAT
AGGAAGTGTTGAGAGGTGGATTGTGTGTATTTGCTTGAGTGAGGATGCGC
GATGGGTTGCATGTGGGCTTCGAGAGGTTGGCAAGGTGGTGGTCTGGGAC
CTGCAGTGCGGTGGCGAGCCTCGTGAACTTGAGACTGGGAGAGAAGTGCA
TGTTGGTTTTGTTGCCGTTAGTGCGATTGGGAGAAAGGTTGTGTGTCGGT
TGAGTGACGACACGATTCGGATCTGGAACTTAGACAGCGGGAAAGCGATC
TGTGAAGCACTGGAAGGAGGTAATGAGTATTTGACATCGTTGACCGTCAG
TGAGAATGGGGAATTGATTGCGTCTGGATCTGGCGATGGCACTATTCGCG
TGTGGAAGGCGAAGACCGGGGAACGCATGAATTTTGTGAATGTTGATTAT
TCGATAAGAAATGTGGCGTTCGGAGAAAACGGGAAGATGATTTTATGGGA
TGCGAAAGGAGCGTTTGGATTGTGGGACCATGAAAAGGGGGACGTTTCGA
AAACAGTGACTGGTGATGCTGCGGACGCTACGTTC