Gcaud171.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud171.t1
Unique NameGcaud171.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length345
Homology
BLAST of Gcaud171.t1 vs. uniprot
Match: A0A2V3IDG2_9FLOR (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDG2_9FLOR)

HSP 1 Score: 137 bits (344), Expect = 5.220e-32
Identity = 81/203 (39.90%), Postives = 122/203 (60.10%), Query Frame = 0
Query:    1 MDRKEKKKRVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEITRLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEVDGRVECIRMNGNELKILYRKTDGMHVVIYNRKFGSLRPPVSVGEFRRAAVSKDGQIVLFADRDV-VKKWDAASGA-VTDIGSVERW-IVCICLSEDARWVACGLREVGKVVVWD 200
            +DR E  K  L ++A+AARLS HAV RNP E YFQLYGRLV Y+++CE+T+ F++E+  VAE    PWAK   GFL  AG A  + F +DGR   + ++ +EL +   K D   + +Y+RKFGSLR        +  +++ DG +V   D+D  V  +++ SG  +  + S   +  V + LS++ +WVAC + + G   +WD
Sbjct:   42 VDRVEDVKTSLRIVAEAARLSVHAVTRNPHEAYFQLYGRLVSYASKCEVTKKFVDELEIVAEK---PWAKPSVGFLTAAGEATRDGFRLDGRATAMAISDSELVVGNMKNDEAKITVYDRKFGSLRTISCGSNNQLLSMTNDGTLVAVVDQDGNVSAFESKSGKQICHLRSQRSYRAVSVSLSDNGKWVAC-VTDRGIGYLWD 240          
BLAST of Gcaud171.t1 vs. uniprot
Match: A0A2V3IBV0_9FLOR (Vegetative incompatibility protein HET-E-1 n=6 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBV0_9FLOR)

HSP 1 Score: 82.4 bits (202), Expect = 1.760e-13
Identity = 68/239 (28.45%), Postives = 104/239 (43.51%), Query Frame = 0
Query:    6 KKKRVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEITRLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEVDGRVECIRMNGNELKILYRKTDGMHVVIYNRKFGSLRPPVSVGEFRRAAVSKDGQIVLFADRDVVKKWDAASGAVTDIGSVERWIVCICLSEDARWVACGLREVGKVVVWDLQCGGEPRELET-GREVHVG--FVAVSAIGRKVVCRLSDDTIRI 241
            K K  L+++ +AARL+   VA NP+EV+FQL+GRL+ ++ +CE T+ F+EE+ + A     PW K   G L+ A GA  E  +  G    IR+  +E  I +R   GM V  + R  G                  D   ++  + D  +  D        +G    ++                   G++V W+   G   RE+E  G   H G  F+  S  G +V    S D IR+
Sbjct:  603 KHKEHLDMVGRAARLAHTTVATNPREVWFQLHGRLLLHATKCEQTKKFVEEIEKCAPR---PWVKGSLGILE-APGAAEEIIKHPGIATSIRVEDDETWIFWRSDGGMGVSKHTRTSGVC----------------DHHPLVMKEEDKPRLLDVDCETFAKMGDRRSFVTA--------------HSNGRIVTWNRDTGEMEREVECLGYISHAGWRFIGFSCDGTRVASTSSQDDIRV 807          
BLAST of Gcaud171.t1 vs. uniprot
Match: A0A2V3ITH8_9FLOR (NB-ARC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH8_9FLOR)

HSP 1 Score: 74.3 bits (181), Expect = 8.470e-11
Identity = 76/258 (29.46%), Postives = 118/258 (45.74%), Query Frame = 0
Query:    5 EKKKRVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEITRLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEV-------------DGRVECIRMN--GNELKILYRKTDGMHVVIYNRKFGSLRPPVSVGEFRR-----AAVSKDGQIVLFADRDVVKKWDAASGAVT-DIGSVERWIVCICLSEDARWVACGLREVGKVVVWDLQCGGEPRELETGREVHVGFVAVSAIGRKVVCRLSDDTIRI 241
            E++ R L VI +AA+LS HAV+RN KEV++QLYGRLV +  +      +LE   ++ E+A  PW K   G L+  G A+ E+  +             D  +  + +   G EL++  R+TD    V            V +  F +     A   K+G +VL+  RD  KK +        DI     W      S D   +A  L  V  + VW+ Q  GE   L  GR++    +A+S  G +V+  ++ +  +I
Sbjct:  672 EERIRALRVILRAAQLSAHAVSRNQKEVWYQLYGRLVSFKEENSTLNDYLE---RIEEHAKRPWMKPSPGILQAPGCAITETLPIPPLNNIRDFSINRDDTILAVLVENQGTELRLWKRRTDASEKVADLSNPFQRPSAVDIVSFSKDGNLFATGHKNGYVVLWDSRDGKKKCELPFHDENYDILRQFSW------SMDGERLA-ALTNVC-IYVWETQ-RGERVGLLPGRKIQC--IALSPTGSRVISAIAKEYAQI 915          
BLAST of Gcaud171.t1 vs. uniprot
Match: A0A2V3IQ74_9FLOR (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ74_9FLOR)

HSP 1 Score: 70.1 bits (170), Expect = 1.860e-9
Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 0
Query:    8 KRVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEITRLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEVDGRVECIRMNGNELKILYRKTDGMHVVIYNRKFGSLRPPVSVGEFRRAAVSKDGQIVLFADRDVVKKWDAASGAVTDIGSVERWIVCICLSEDARWVACGLREVGKVVVWDLQCGGEPRELET-GREVHVG--FVAVSAIGRKVVCRLSDDTIRI 241
            K+ LE++++AAR+S   V +NP+EV+FQL+GRL+ ++ +C+ T+ F+EE+ + A     PW KA  G L+    A  E   V G V  I M  ++  I +++            FG     + V +  R +   +    +  + D  K W      + D+G           + D R V    R  G++  W+   G   R +E  G     G  FV  +  G +V    S   IR+
Sbjct:  605 KKHLEMVSRAARMSCTTVVKNPREVWFQLHGRLLWHATKCKQTKKFVEEIEKCAPR---PWVKASLGILEAPSDAE-EIIRVPGYVMSISMEEDDTWIFWKRAT----------FGDDDKAIGVSKHTRTSGVCEHHPFVMKEED--KAW------LLDVGCEA-----FATTGDRRSVVTAHRN-GRIATWNRDTGEMERVVECLGYIAAPGSRFVEFNCDGTRVASTSSQHEIRV 813          
BLAST of Gcaud171.t1 vs. uniprot
Match: A0A2V3IH69_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH69_9FLOR)

HSP 1 Score: 65.5 bits (158), Expect = 3.540e-8
Identity = 60/204 (29.41%), Postives = 90/204 (44.12%), Query Frame = 0
Query:    9 RVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEITRLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEVDG---RVECIRMNGNELKILYRKTDGMHVVI---YNRKFGSLRPPVSVGEFRRAAVSKDGQIVLFADRDVVKKWDAASGAVTDIGSVERWIVCICLSEDARWVACGLREVGKVVVWDLQCGGE 206
            R L +I  A R+S   V  N  E +FQ+YGR++ Y+ QCE TR       +V E A  PW K   G L  AGG + ES  +     ++  I   G+ +++L+  TDG  V     YNR  G+ R    +G     +    G+                S    ++  + R   C   S + + +  G  + G+VVVWD+  G E
Sbjct:   76 RYLRLIGSAVRMSCGFVVENAYEAWFQMYGRVMWYAEQCERTRRL---TCKVEECAPRPWVKPSVGVLNEAGGPVSESLRIGESCRKIVDICHGGDVIRVLW--TDGNRVGFVTEYNRIHGN-RKTYKLGSAVTESELSGGR---------------GSSGRNNVLPLSRDFRCGAFSGNLKKLVTGHHD-GRVVVWDIDSGYE 257          
The following BLAST results are available for this feature:
BLAST of Gcaud171.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IDG2_9FLOR5.220e-3239.90Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A2V3IBV0_9FLOR1.760e-1328.45Vegetative incompatibility protein HET-E-1 n=6 Tax... [more]
A0A2V3ITH8_9FLOR8.470e-1129.46NB-ARC domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3IQ74_9FLOR1.860e-927.43Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A2V3IH69_9FLOR3.540e-829.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 160..200
e-value: 79.0
score: 5.0
coord: 203..243
e-value: 300.0
score: 1.4
coord: 247..286
e-value: 1.7E-5
score: 34.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 261..286
e-value: 1.4E-4
score: 22.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 254..295
score: 14.284707
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 76..344
e-value: 2.5E-34
score: 120.3
NoneNo IPR availablePANTHERPTHR19857MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 168..307
NoneNo IPR availablePANTHERPTHR19857:SF8MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 168..307
NoneNo IPR availablePANTHERPTHR19857:SF8MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 138..287
NoneNo IPR availablePANTHERPTHR19857MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDcoord: 138..287
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 254..291
score: 11.101955
NoneNo IPR availableSUPERFAMILY69322Tricorn protease domain 2coord: 95..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2096_length_6863_cov_6.957177contigNODE_2096_length_6863_cov_6.957177:1580..2614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud171.t1Gcaud171.t1Gracilaria caudata M_176_S67 malemRNANODE_2096_length_6863_cov_6.957177 1580..2614 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud171.t1 ID=Gcaud171.t1|Name=Gcaud171.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MDRKEKKKRVLEVIAQAARLSQHAVARNPKEVYFQLYGRLVGYSNQCEIT
RLFLEEVAQVAENAAGPWAKARRGFLKGAGGAMLESFEVDGRVECIRMNG
NELKILYRKTDGMHVVIYNRKFGSLRPPVSVGEFRRAAVSKDGQIVLFAD
RDVVKKWDAASGAVTDIGSVERWIVCICLSEDARWVACGLREVGKVVVWD
LQCGGEPRELETGREVHVGFVAVSAIGRKVVCRLSDDTIRIWNLDSGKAI
CEALEGGNEYLTSLTVSENGELIASGSGDGTIRVWKAKTGERMNFVNVDY
SIRNVAFGENGKMILWDAKGAFGLWDHEKGDVSKTVTGDAADATF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf