Gcaud2626.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2626.t2
Unique Name	Gcaud2626.t2
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	306

Homology

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BLAST of Gcaud2626.t2 vs. uniprot
Match: A0A2V3IRC3_9FLOR (Zinc finger protein-like 1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRC3_9FLOR)

HSP 1 Score: 259 bits (663), Expect = 8.320e-82
Identity = 144/301 (47.84%), Postives = 198/301 (65.78%), Query Frame = 0

Query:    7 VRTQKN----SSYVWPPVCAACGKQLDIDGDNVRRICLHVEHASCIEVSSPPHHNCSTCQTPLLDSASTSKLSHAIRKRLRNMTTITRSSAPTIATVTSWDDSDDWKRTSSRNTMNLKLEQR-----QTDSESNSKIVSETDCSDGIG---GKGALQAKSSADGTPSRVSMAKRPLPPPVQNNARDLRLDLELLPQDKDGSGAGIKTAKRDAQSGGLITSTSMRKVMKMGNRRLIDLRKLMSTNRRQLLTIIACVACIILVSFLMSGDDEFNVVVRPAAEHVSLPHVRVNPAFLQ-PRKTG 294
            VRT +N    +SY WPPVCAAC  QL+ + D +RR CLHVEHA+CIE S   +  C  C T L+D +  S+L+ AIR+RL  MTT++  SAPT+ T +SWDDS  W  ++S NT+NLK +       +   E +S+IVS+TDCSD +         +  ++ +GTPSRVSMA R +  P +    D R+D+++LPQ    +    K  KRDA S  ++TSTS+RKV+K+GNRR IDLRK +STNRRQL T + C  CI++++FLMSG+++     RP  + VSLPHV VNPAF++ P+K G
Sbjct:   39 VRTYRNFIEDASYQWPPVCAACATQLESNVDTIRRTCLHVEHATCIENSRAVNRECPLCNTILVDKSDHSQLAQAIRRRLHTMTTVSLGSAPTVITASSWDDSARWT-SNSNNTLNLKRQSTLPKALEDHPEDHSRIVSQTDCSDALNHIKSHSNPERIATKEGTPSRVSMAARTVSTPPKPTQVDARIDMDILPQKVGHTSRTAKPVKRDATSSAIVTSTSVRKVIKLGNRRFIDLRKRLSTNRRQLATFLVCAICIVVITFLMSGEEQLPTASRPVTDQVSLPHVIVNPAFIKKPQKPG 338

[Close]

BLAST of Gcaud2626.t2 vs. uniprot
Match: A0A5J4YYS8_PORPP (Zinc finger protein-like 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYS8_PORPP)

HSP 1 Score: 65.5 bits (158), Expect = 2.770e-8
Identity = 27/73 (36.99%), Postives = 47/73 (64.38%), Query Frame = 0

Query:   11 KNSSYVWPPVCAACGKQLDIDGDNVRRICLHVEHASCIEVSSPPHHNCSTCQTPLLD-SASTSKLSHAIRKRL 82
            ++SSY WPP CA C ++++++ ++VR  CLHV HA C+  + PP   C  C TP++     T+ L+  +R+++
Sbjct:   46 QDSSYKWPPECALCSQEIEVEQESVRLTCLHVLHAKCLVDAPPPALACPECGTPIVPLPTDTAPLAEKLRRQM 118

The following BLAST results are available for this feature:

BLAST of Gcaud2626.t2 vs. uniprot

BLAST of Gcaud2626.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IRC3_9FLOR	8.320e-82	47.84	Zinc finger protein-like 1-like n=1 Tax=Gracilario...	[more]
A0A5J4YYS8_PORPP	2.770e-8	36.99	Zinc finger protein-like 1 n=1 Tax=Porphyridium pu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..138
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 242..261
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..241
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 262..305
None	No IPR available	TMHMM	TMhelix		coord: 242..261

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_205_length_37462_cov_4.544219	contig	NODE_205_length_37462_cov_4.544219:15412..16513 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2626.t2	Gcaud2626.t2	Gracilaria caudata M_176_S67 male	mRNA	NODE_205_length_37462_cov_4.544219 15412..16513 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2626.t2 ID=Gcaud2626.t2|Name=Gcaud2626.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
LSGGRRVRTQKNSSYVWPPVCAACGKQLDIDGDNVRRICLHVEHASCIEV
SSPPHHNCSTCQTPLLDSASTSKLSHAIRKRLRNMTTITRSSAPTIATVT
SWDDSDDWKRTSSRNTMNLKLEQRQTDSESNSKIVSETDCSDGIGGKGAL
QAKSSADGTPSRVSMAKRPLPPPVQNNARDLRLDLELLPQDKDGSGAGIK
TAKRDAQSGGLITSTSMRKVMKMGNRRLIDLRKLMSTNRRQLLTIIACVA
CIILVSFLMSGDDEFNVVVRPAAEHVSLPHVRVNPAFLQPRKTGDNPRSV
LANDQ*