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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2626.t2.stop1 | Gcaud2626.t2.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_205_length_37462_cov_4.544219 15412..15414 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2626.t2.start1 | Gcaud2626.t2.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_205_length_37462_cov_4.544219 16511..16513 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2626.t2 ID=Gcaud2626.t2|Name=Gcaud2626.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=306bp
LSGGRRVRTQKNSSYVWPPVCAACGKQLDIDGDNVRRICLHVEHASCIEV
SSPPHHNCSTCQTPLLDSASTSKLSHAIRKRLRNMTTITRSSAPTIATVT
SWDDSDDWKRTSSRNTMNLKLEQRQTDSESNSKIVSETDCSDGIGGKGAL
QAKSSADGTPSRVSMAKRPLPPPVQNNARDLRLDLELLPQDKDGSGAGIK
TAKRDAQSGGLITSTSMRKVMKMGNRRLIDLRKLMSTNRRQLLTIIACVA
CIILVSFLMSGDDEFNVVVRPAAEHVSLPHVRVNPAFLQPRKTGDNPRSV
LANDQ* back to topspliced messenger RNA >Gcaud2626.t2 ID=Gcaud2626.t2|Name=Gcaud2626.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=918bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:15412..16513- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
TTGTCTGGTGGCCGACGAGTCCGTACACAGAAGAACTCTTCCTACGTTTG
GCCCCCGGTCTGTGCCGCGTGCGGTAAGCAACTTGACATCGACGGTGATA
ACGTTCGACGCATCTGTCTCCACGTGGAACACGCTTCTTGTATCGAAGTT
TCAAGTCCTCCGCATCACAACTGCTCTACATGTCAAACACCGCTCCTCGA
CAGCGCTAGTACTTCCAAGTTATCCCACGCCATAAGAAAACGACTGAGAA
ACATGACCACTATTACTCGCTCCAGTGCGCCGACGATCGCCACTGTCACT
TCCTGGGATGATTCCGACGATTGGAAGCGAACATCGTCACGAAATACGAT
GAATCTGAAACTGGAGCAACGCCAGACGGACTCAGAAAGCAATTCCAAGA
TTGTATCTGAAACAGATTGCAGTGATGGCATCGGTGGGAAGGGCGCACTT
CAAGCCAAGTCTAGTGCCGATGGCACTCCTTCTCGCGTTTCTATGGCGAA
AAGACCTCTTCCGCCTCCTGTGCAAAACAACGCTAGAGATTTGCGTTTAG
ATTTGGAGCTTTTACCACAGGATAAGGATGGCAGCGGCGCAGGGATCAAA
ACGGCGAAGCGCGACGCTCAATCTGGAGGCCTCATTACATCGACTTCTAT
GCGCAAGGTTATGAAAATGGGTAACAGACGACTAATTGATCTCAGAAAGC
TTATGTCAACCAATCGTCGACAGCTTCTAACTATAATAGCTTGTGTTGCT
TGCATTATTCTGGTCAGCTTCCTCATGTCTGGTGACGACGAATTTAACGT
CGTCGTCAGGCCAGCTGCTGAGCACGTTTCTCTACCACATGTACGGGTGA
ACCCTGCATTTCTTCAACCGCGGAAGACAGGTGACAACCCGAGGAGTGTC
TTGGCAAATGATCAGTGA back to topprotein sequence of Gcaud2626.t2 >Gcaud2626.t2 ID=Gcaud2626.t2|Name=Gcaud2626.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=306bp
LSGGRRVRTQKNSSYVWPPVCAACGKQLDIDGDNVRRICLHVEHASCIEV
SSPPHHNCSTCQTPLLDSASTSKLSHAIRKRLRNMTTITRSSAPTIATVT
SWDDSDDWKRTSSRNTMNLKLEQRQTDSESNSKIVSETDCSDGIGGKGAL
QAKSSADGTPSRVSMAKRPLPPPVQNNARDLRLDLELLPQDKDGSGAGIK
TAKRDAQSGGLITSTSMRKVMKMGNRRLIDLRKLMSTNRRQLLTIIACVA
CIILVSFLMSGDDEFNVVVRPAAEHVSLPHVRVNPAFLQPRKTGDNPRSV
LANDQ* back to topmRNA from alignment at NODE_205_length_37462_cov_4.544219:15412..16513- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2626.t2 ID=Gcaud2626.t2|Name=Gcaud2626.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1102bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:15412..16513- (Gracilaria caudata M_176_S67 male)
TTGTCTGGTGGCCGACGAGTCCGTACACAGAAGAGTGAGCAACCCATTTC
AGTATCCATGACCGGCGTTTTTTTCGTGTACTAACCACCTCTCGTTATAG
TGCGTGGTTCGCACTTATCGTAATTTCATCGAAGACTCTTCCTACGTTTG
GCCCCCGGTCTGTGCCGCGTGCGGTAAGCAACTTGACATCGACGGTGATA
ACGTTCGACGCATCTGTCTCCGTAAGTGTTTTGCCTTTCTCTTTCGTTTG
CTATACGTTTTGCAACCTCGTTTTTGACACCAATTCGTTTTCGTTTTGTT
TTCAGACGTGGAACACGCTTCTTGTATCGAAGTTTCAAGTCCTCCGCATC
ACAACTGCTCTACATGTCAAACACCGCTCCTCGACAGCGCTAGTACTTCC
AAGTTATCCCACGCCATAAGAAAACGACTGAGAAACATGACCACTATTAC
TCGCTCCAGTGCGCCGACGATCGCCACTGTCACTTCCTGGGATGATTCCG
ACGATTGGAAGCGAACATCGTCACGAAATACGATGAATCTGAAACTGGAG
CAACGCCAGACGGACTCAGAAAGCAATTCCAAGATTGTATCTGAAACAGA
TTGCAGTGATGGCATCGGTGGGAAGGGCGCACTTCAAGCCAAGTCTAGTG
CCGATGGCACTCCTTCTCGCGTTTCTATGGCGAAAAGACCTCTTCCGCCT
CCTGTGCAAAACAACGCTAGAGATTTGCGTTTAGATTTGGAGCTTTTACC
ACAGGATAAGGATGGCAGCGGCGCAGGGATCAAAACGGCGAAGCGCGACG
CTCAATCTGGAGGCCTCATTACATCGACTTCTATGCGCAAGGTTATGAAA
ATGGGTAACAGACGACTAATTGATCTCAGAAAGCTTATGTCAACCAATCG
TCGACAGCTTCTAACTATAATAGCTTGTGTTGCTTGCATTATTCTGGTCA
GCTTCCTCATGTCTGGTGACGACGAATTTAACGTCGTCGTCAGGCCAGCT
GCTGAGCACGTTTCTCTACCACATGTACGGGTGAACCCTGCATTTCTTCA
ACCGCGGAAGACAGGTGACAACCCGAGGAGTGTCTTGGCAAATGATCAGT
GA back to topCoding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:15412..16513- >Gcaud2626.t2 ID=Gcaud2626.t2|Name=Gcaud2626.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=918bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:15412..16513- (Gracilaria caudata M_176_S67 male)
TTGTCTGGTGGCCGACGAGTCCGTACACAGAAGAACTCTTCCTACGTTTG
GCCCCCGGTCTGTGCCGCGTGCGGTAAGCAACTTGACATCGACGGTGATA
ACGTTCGACGCATCTGTCTCCACGTGGAACACGCTTCTTGTATCGAAGTT
TCAAGTCCTCCGCATCACAACTGCTCTACATGTCAAACACCGCTCCTCGA
CAGCGCTAGTACTTCCAAGTTATCCCACGCCATAAGAAAACGACTGAGAA
ACATGACCACTATTACTCGCTCCAGTGCGCCGACGATCGCCACTGTCACT
TCCTGGGATGATTCCGACGATTGGAAGCGAACATCGTCACGAAATACGAT
GAATCTGAAACTGGAGCAACGCCAGACGGACTCAGAAAGCAATTCCAAGA
TTGTATCTGAAACAGATTGCAGTGATGGCATCGGTGGGAAGGGCGCACTT
CAAGCCAAGTCTAGTGCCGATGGCACTCCTTCTCGCGTTTCTATGGCGAA
AAGACCTCTTCCGCCTCCTGTGCAAAACAACGCTAGAGATTTGCGTTTAG
ATTTGGAGCTTTTACCACAGGATAAGGATGGCAGCGGCGCAGGGATCAAA
ACGGCGAAGCGCGACGCTCAATCTGGAGGCCTCATTACATCGACTTCTAT
GCGCAAGGTTATGAAAATGGGTAACAGACGACTAATTGATCTCAGAAAGC
TTATGTCAACCAATCGTCGACAGCTTCTAACTATAATAGCTTGTGTTGCT
TGCATTATTCTGGTCAGCTTCCTCATGTCTGGTGACGACGAATTTAACGT
CGTCGTCAGGCCAGCTGCTGAGCACGTTTCTCTACCACATGTACGGGTGA
ACCCTGCATTTCTTCAACCGCGGAAGACAGGTGACAACCCGAGGAGTGTC
TTGGCAAATGATCAGTGA back to top
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