Gcaud723.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud723.t1
Unique NameGcaud723.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_20530_length_243_cov_15.177632contigNODE_20530_length_243_cov_15.177632:2..238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1238184.CM001792_gene636
Preferred nametex
PFAMsHHH_3,S1,Tex_N,Tex_YqgF
Max annot lvl91061|Bacilli
KEGG koko:K06959
Evalue6.84e-05
EggNOG OGsCOG2183@1|root,COG2183@2|Bacteria,1TPFE@1239|Firmicutes,4HAGY@91061|Bacilli,23J8F@182709|Oceanobacillus
DescriptionTex-like protein N-terminal domain
COG categoryK
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud723Gcaud723Gracilaria caudata M_176_S67 malegeneNODE_20530_length_243_cov_15.177632 2..238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud723.t1.CDS1Gcaud723.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_20530_length_243_cov_15.177632 2..238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud723.t1.exon1Gcaud723.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_20530_length_243_cov_15.177632 2..238 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud723.t1.start1Gcaud723.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_20530_length_243_cov_15.177632 236..238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud723.t1Gcaud723.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_20530_length_243_cov_15.177632 2..238 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud723.t1 ID=Gcaud723.t1|Name=Gcaud723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=79bp
MKYGVFVNIGVKRDGLIHFSRMPEKHRTEWKEFKEGMEVCVEVTDIIDDQ
IALALVGVSDEMLKEALEMISSATARVED
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spliced messenger RNA

>Gcaud723.t1 ID=Gcaud723.t1|Name=Gcaud723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=237bp|location=Sequence derived from alignment at NODE_20530_length_243_cov_15.177632:2..238- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATACGGCGTCTTTGTCAACATTGGGGTTAAGAGGGACGGATTGAT
CCATTTCTCCCGAATGCCTGAAAAGCATAGAACAGAATGGAAAGAGTTCA
AGGAAGGGATGGAGGTATGTGTGGAAGTGACTGACATTATAGATGACCAA
ATAGCCCTTGCCTTGGTTGGTGTCTCGGACGAGATGCTGAAAGAAGCTCT
TGAGATGATCAGTTCTGCTACAGCTCGCGTTGAAGAT
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protein sequence of Gcaud723.t1

>Gcaud723.t1 ID=Gcaud723.t1|Name=Gcaud723.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=79bp
MKYGVFVNIGVKRDGLIHFSRMPEKHRTEWKEFKEGMEVCVEVTDIIDDQ
IALALVGVSDEMLKEALEMISSATARVED
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mRNA from alignment at NODE_20530_length_243_cov_15.177632:2..238-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud723.t1 ID=Gcaud723.t1|Name=Gcaud723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=237bp|location=Sequence derived from alignment at NODE_20530_length_243_cov_15.177632:2..238- (Gracilaria caudata M_176_S67 male)
ATGAAATACGGCGTCTTTGTCAACATTGGGGTTAAGAGGGACGGATTGAT
CCATTTCTCCCGAATGCCTGAAAAGCATAGAACAGAATGGAAAGAGTTCA
AGGAAGGGATGGAGGTATGTGTGGAAGTGACTGACATTATAGATGACCAA
ATAGCCCTTGCCTTGGTTGGTGTCTCGGACGAGATGCTGAAAGAAGCTCT
TGAGATGATCAGTTCTGCTACAGCTCGCGTTGAAGAT
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Coding sequence (CDS) from alignment at NODE_20530_length_243_cov_15.177632:2..238-

>Gcaud723.t1 ID=Gcaud723.t1|Name=Gcaud723.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=237bp|location=Sequence derived from alignment at NODE_20530_length_243_cov_15.177632:2..238- (Gracilaria caudata M_176_S67 male)
ATGAAATACGGCGTCTTTGTCAACATTGGGGTTAAGAGGGACGGATTGAT
CCATTTCTCCCGAATGCCTGAAAAGCATAGAACAGAATGGAAAGAGTTCA
AGGAAGGGATGGAGGTATGTGTGGAAGTGACTGACATTATAGATGACCAA
ATAGCCCTTGCCTTGGTTGGTGTCTCGGACGAGATGCTGAAAGAAGCTCT
TGAGATGATCAGTTCTGCTACAGCTCGCGTTGAAGAT
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