Gcaud723.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud723.t1
Unique NameGcaud723.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length79
Homology
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BLAST of Gcaud723.t1 vs. uniprot
Match: A0A2V3J2Q0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Q0_9FLOR)

HSP 1 Score: 104 bits (259), Expect = 1.190e-24
Identity = 47/79 (59.49%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:    1 MKYGVFVNIGVKRDGLIHFSRMPEKHRTEWKEFKEGMEVCVEVTDIIDDQIALALVGVSDEMLKEALEMISSATARVED 79
            +KYGVFV+IGVKR+GLIH+SRM ++H+ +WKEF+ G+E+ VEV DI+DD+++L+LV V DE+L E  +   SATARV D
Sbjct:  288 LKYGVFVDIGVKREGLIHYSRMTDRHKWDWKEFEAGLELYVEVHDIVDDRLSLSLVEVKDEILSEVTDRAKSATARVHD 366
The following BLAST results are available for this feature:
BLAST of Gcaud723.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J2Q0_9FLOR1.190e-2459.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..62
e-value: 3.0E-9
score: 38.8
IPR003029S1 domainPFAMPF00575S1coord: 1..49
e-value: 3.7E-7
score: 30.4
IPR003029S1 domainPROSITEPS50126S1coord: 1..56
score: 9.739279
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_20530_length_243_cov_15.177632contigNODE_20530_length_243_cov_15.177632:2..238 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud723.t1Gcaud723.t1Gracilaria caudata M_176_S67 malemRNANODE_20530_length_243_cov_15.177632 2..238 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud723.t1 ID=Gcaud723.t1|Name=Gcaud723.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=79bp
MKYGVFVNIGVKRDGLIHFSRMPEKHRTEWKEFKEGMEVCVEVTDIIDDQ
IALALVGVSDEMLKEALEMISSATARVED
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003029S1_domain
IPR012340NA-bd_OB-fold