Gcaud9338.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9338.t1
Unique NameGcaud9338.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_199_length_38196_cov_4.525364contigNODE_199_length_38196_cov_4.525364:9322..9918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue7.89e-24
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9338Gcaud9338Gracilaria caudata M_176_S67 malegeneNODE_199_length_38196_cov_4.525364 9322..9918 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9338.t1.stop1Gcaud9338.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_199_length_38196_cov_4.525364 9322..9324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9338.t1.CDS1Gcaud9338.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_199_length_38196_cov_4.525364 9322..9918 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9338.t1.exon1Gcaud9338.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_199_length_38196_cov_4.525364 9322..9918 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9338.t1.start1Gcaud9338.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_199_length_38196_cov_4.525364 9916..9918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9338.t1Gcaud9338.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_199_length_38196_cov_4.525364 9322..9918 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9338.t1 ID=Gcaud9338.t1|Name=Gcaud9338.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=199bp
MCSACKLKPFNPFTGHFYDCAAIYDLDDPACQAKLKHYAAMNKHCDPIRL
KQVQNFNDPWNKKGLDYFVYSVCEECCDCVPIGARVEQHNWRANNNQLLN
SKRGNCPAHAFYDVCAVLPNIRFSKNPGGEDHWDWPKICPLITKWQFSPA
SKNWLTKSYVNMDWKINRFLVWFFWDNSCGYVNTWKNCVALEHAQKRV*
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spliced messenger RNA

>Gcaud9338.t1 ID=Gcaud9338.t1|Name=Gcaud9338.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:9322..9918- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCCGCGTGTAAGCTCAAACCTTTCAATCCGTTCACGGGTCATTT
CTATGACTGCGCCGCCATCTACGACTTGGATGATCCCGCATGCCAAGCCA
AGCTGAAACACTACGCAGCCATGAACAAGCACTGCGACCCCATTCGCCTC
AAGCAGGTGCAGAATTTCAACGACCCGTGGAACAAGAAAGGTTTGGATTA
CTTTGTGTACTCTGTATGCGAGGAGTGTTGCGATTGCGTGCCTATTGGTG
CCAGGGTAGAGCAACACAACTGGCGAGCAAACAACAACCAACTGCTCAAT
AGCAAGCGCGGTAACTGTCCTGCGCACGCGTTTTACGACGTGTGTGCGGT
GCTGCCCAACATTCGCTTCTCAAAGAACCCTGGCGGAGAAGATCATTGGG
ACTGGCCAAAGATTTGTCCGCTGATCACAAAGTGGCAGTTCTCGCCGGCG
TCGAAGAACTGGCTCACAAAGTCGTACGTGAACATGGATTGGAAAATCAA
TCGCTTCCTCGTCTGGTTCTTCTGGGACAATTCATGTGGCTACGTCAACA
CATGGAAGAACTGCGTAGCGTTGGAGCATGCGCAAAAGCGAGTGTAG
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protein sequence of Gcaud9338.t1

>Gcaud9338.t1 ID=Gcaud9338.t1|Name=Gcaud9338.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=199bp
MCSACKLKPFNPFTGHFYDCAAIYDLDDPACQAKLKHYAAMNKHCDPIRL
KQVQNFNDPWNKKGLDYFVYSVCEECCDCVPIGARVEQHNWRANNNQLLN
SKRGNCPAHAFYDVCAVLPNIRFSKNPGGEDHWDWPKICPLITKWQFSPA
SKNWLTKSYVNMDWKINRFLVWFFWDNSCGYVNTWKNCVALEHAQKRV*
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mRNA from alignment at NODE_199_length_38196_cov_4.525364:9322..9918-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9338.t1 ID=Gcaud9338.t1|Name=Gcaud9338.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=597bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:9322..9918- (Gracilaria caudata M_176_S67 male)
ATGTGCTCCGCGTGTAAGCTCAAACCTTTCAATCCGTTCACGGGTCATTT
CTATGACTGCGCCGCCATCTACGACTTGGATGATCCCGCATGCCAAGCCA
AGCTGAAACACTACGCAGCCATGAACAAGCACTGCGACCCCATTCGCCTC
AAGCAGGTGCAGAATTTCAACGACCCGTGGAACAAGAAAGGTTTGGATTA
CTTTGTGTACTCTGTATGCGAGGAGTGTTGCGATTGCGTGCCTATTGGTG
CCAGGGTAGAGCAACACAACTGGCGAGCAAACAACAACCAACTGCTCAAT
AGCAAGCGCGGTAACTGTCCTGCGCACGCGTTTTACGACGTGTGTGCGGT
GCTGCCCAACATTCGCTTCTCAAAGAACCCTGGCGGAGAAGATCATTGGG
ACTGGCCAAAGATTTGTCCGCTGATCACAAAGTGGCAGTTCTCGCCGGCG
TCGAAGAACTGGCTCACAAAGTCGTACGTGAACATGGATTGGAAAATCAA
TCGCTTCCTCGTCTGGTTCTTCTGGGACAATTCATGTGGCTACGTCAACA
CATGGAAGAACTGCGTAGCGTTGGAGCATGCGCAAAAGCGAGTGTAG
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Coding sequence (CDS) from alignment at NODE_199_length_38196_cov_4.525364:9322..9918-

>Gcaud9338.t1 ID=Gcaud9338.t1|Name=Gcaud9338.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=597bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:9322..9918- (Gracilaria caudata M_176_S67 male)
ATGTGCTCCGCGTGTAAGCTCAAACCTTTCAATCCGTTCACGGGTCATTT
CTATGACTGCGCCGCCATCTACGACTTGGATGATCCCGCATGCCAAGCCA
AGCTGAAACACTACGCAGCCATGAACAAGCACTGCGACCCCATTCGCCTC
AAGCAGGTGCAGAATTTCAACGACCCGTGGAACAAGAAAGGTTTGGATTA
CTTTGTGTACTCTGTATGCGAGGAGTGTTGCGATTGCGTGCCTATTGGTG
CCAGGGTAGAGCAACACAACTGGCGAGCAAACAACAACCAACTGCTCAAT
AGCAAGCGCGGTAACTGTCCTGCGCACGCGTTTTACGACGTGTGTGCGGT
GCTGCCCAACATTCGCTTCTCAAAGAACCCTGGCGGAGAAGATCATTGGG
ACTGGCCAAAGATTTGTCCGCTGATCACAAAGTGGCAGTTCTCGCCGGCG
TCGAAGAACTGGCTCACAAAGTCGTACGTGAACATGGATTGGAAAATCAA
TCGCTTCCTCGTCTGGTTCTTCTGGGACAATTCATGTGGCTACGTCAACA
CATGGAAGAACTGCGTAGCGTTGGAGCATGCGCAAAAGCGAGTGTAG
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