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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1935.t1.stop1 | Gcaud1935.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_105_length_50300_cov_4.471768 34928..34930 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1935.t1.intron1 | Gcaud1935.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_105_length_50300_cov_4.471768 36053..36115 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1935.t1.start1 | Gcaud1935.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_105_length_50300_cov_4.471768 37502..37504 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1935.t1 ID=Gcaud1935.t1|Name=Gcaud1935.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=838bp MSTTFGTKQISADQHASLTAPARDRSITVDDFIEQPVHADPESDSDADEN EPAVTPAQKRRRSAIRRSNSALSFESEAEEDEDGPPLKKQRSDPQISNPA SSPVATHANAPKAPSLQIPSPPTASTPSTKGFFSGRSPISPSRPTSASLF NVSDVVRQSNSLPQPLNSPKITPSPPPPSIASYVFPRSPNAPPLSIDPST PPHATPPRTTRPATQSDPSPPAPISPRLLSKKSFISPPADQSSSVVSRPA SSTDKVSSPAPHKTTVSAVTRTSPVTSVPTSTKLPAGTATNLVSSDPEPI SRSPKASAPPASKLPARPTLDISSNLAGNHPPSGAPPVSRASANPTQSSP QPNTPDTTASVQERNSPMQTPTPTAVPPGGSAQTPQPVRTIPGHANLPPL SHEGLINVRMPKPADDEDWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALA PAVADEPPSTICACMAPYPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNL SLAAQALHRPIIDAREGNPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRR RIVPSGLLSESVKIPFVCSGMFWVPESERNCTSHMDAETQRIEKYINQQA ALRGERRKALLESFGNGSDDESESSLRNDPSNVKLSARSSTHHPGQPKKP LSNHTAIPNGTSVQDPVPKTVPSVQANTESLIERTKAVSIGQPSPEIAQA NGFTPMEVDTMVAAQPVHSNTNRTQPGDDMTGTTPQQSTATQAQRPVLGP GTATETKKEDTKQEDSVSAPSMKPEDVQQELLVFIAELELDEPTEDLLTD LALTNNKTLAQIYIAFRSNKERFKRQAIRFAKRTAKP* back to topspliced messenger RNA >Gcaud1935.t1 ID=Gcaud1935.t1|Name=Gcaud1935.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2514bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:34928..37504- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTACGACATTCGGCACAAAACAAATCTCCGCCGACCAACACGCATC GCTCACAGCACCCGCACGAGACCGTTCTATAACGGTCGACGATTTTATTG AGCAGCCAGTGCATGCCGACCCAGAATCGGACTCTGACGCAGACGAGAAC GAGCCCGCTGTTACCCCCGCTCAGAAGAGACGTCGTTCGGCTATTCGCCG CTCCAACTCGGCGCTCTCCTTCGAGAGTGAGGCTGAAGAAGACGAGGACG GACCACCTCTGAAGAAGCAGCGTTCAGATCCGCAGATCTCAAACCCTGCT TCATCGCCGGTCGCAACGCATGCAAACGCACCGAAGGCTCCTTCCCTGCA AATTCCATCTCCTCCTACCGCAAGTACTCCGAGTACCAAGGGTTTCTTCT CGGGTCGCTCTCCTATCTCGCCTAGTCGCCCTACTTCGGCTTCGTTGTTC AACGTCAGTGACGTAGTACGCCAATCGAATTCTCTTCCACAGCCTCTGAA TTCCCCGAAGATCACACCCAGCCCCCCACCTCCGTCTATTGCATCTTACG TGTTCCCGAGGTCACCCAACGCCCCTCCTCTATCCATCGACCCGTCTACG CCGCCACACGCCACTCCCCCGCGTACCACTCGACCCGCCACACAGTCTGA CCCGTCGCCACCAGCTCCCATTTCTCCCAGGCTCTTGAGCAAAAAGTCTT TCATAAGTCCTCCGGCGGATCAGTCTTCTTCGGTCGTGAGCAGACCTGCC TCGTCTACTGATAAGGTCTCTTCACCAGCGCCTCACAAAACTACGGTTTC AGCCGTCACACGCACATCCCCGGTTACTAGTGTGCCGACTTCTACCAAGC TTCCTGCAGGAACGGCCACTAATCTTGTCTCCTCGGATCCAGAGCCCATT TCGCGTTCTCCAAAGGCATCAGCTCCGCCCGCCTCAAAACTCCCAGCCCG CCCTACTCTCGATATTTCCTCCAATCTCGCTGGGAATCACCCGCCATCAG GAGCGCCACCTGTGTCCAGAGCTTCTGCCAACCCAACGCAATCATCGCCC CAGCCTAATACGCCGGACACGACAGCATCTGTTCAGGAGCGTAACTCTCC GATGCAGACCCCCACACCAACGGCGGTACCACCAGGTGGTTCTGCGCAAA CCCCTCAACCAGTACGAACGATTCCCGGACATGCGAACTTGCCACCGCTA TCACATGAGGGCCTCATTAATGTTCGCATGCCAAAGCCTGCTGATGATGA GGACTGGGATCGCTTCGTTTTCTTTAAGCATAGACCGCGACGCCATGACT TCGGAAAGAACTGCTATCTTTCTGACTATTCTCCTTTTGCGGCACTGGCT CCAGCAGTAGCGGACGAACCACCTTCAACAATTTGTGCGTGTATGGCCCC CTATCCGGTCACGACCTCCCCATGGTATTGCAAGGGGTGTCGCTCTGCCG GACTGCCGGATGGCCAACCGATACGGATACCGGACCCTCCTTCAAATCTA TCTCTCGCTGCACAGGCATTACATCGCCCTATCATTGACGCAAGGGAAGG CAACCCAATGGATTTGGTGCTGCATCCTTCCTTGATGGCCATGTTTCGCG AGCATTACGGGGGACGTGATTGGCTCCAATGTTACACATGCAAGCGACGG AGAATTGTCCCGAGCGGGTTACTCTCAGAGTCTGTGAAGATCCCTTTCGT ATGTAGCGGGATGTTTTGGGTACCTGAGAGCGAGCGGAATTGTACGTCAC ATATGGACGCTGAAACGCAGCGCATTGAGAAGTACATTAACCAACAAGCG GCCCTGCGCGGCGAGCGAAGAAAGGCTCTACTGGAAAGCTTTGGTAACGG TTCGGATGACGAAAGTGAGAGTTCGTTACGCAACGACCCGTCAAACGTGA AGCTGTCAGCAAGATCGAGCACTCATCATCCTGGACAGCCAAAGAAGCCA CTCTCCAATCACACAGCGATTCCAAACGGAACCTCTGTTCAAGATCCGGT TCCAAAAACTGTCCCGTCAGTACAAGCCAACACTGAGAGTCTCATTGAGC GAACAAAAGCTGTAAGTATTGGGCAACCGTCTCCCGAAATCGCTCAAGCT AATGGATTTACCCCAATGGAAGTGGACACAATGGTTGCAGCGCAACCCGT CCACTCAAATACGAACCGCACACAGCCTGGGGATGATATGACTGGCACAA CACCGCAACAGTCGACCGCTACTCAAGCTCAGAGACCCGTGCTAGGCCCA GGGACCGCCACCGAGACCAAAAAGGAAGATACTAAACAAGAGGATAGCGT TAGTGCACCTAGCATGAAGCCAGAGGACGTACAACAGGAATTGCTGGTAT TCATTGCAGAGTTGGAACTTGACGAGCCTACGGAAGATTTATTAACAGAT CTAGCTTTGACTAACAACAAGACTTTGGCTCAAATTTACATCGCATTCCG ATCGAACAAGGAGCGATTCAAACGTCAAGCTATTCGATTCGCAAAAAGAA CAGCAAAACCTTGA back to topprotein sequence of Gcaud1935.t1 >Gcaud1935.t1 ID=Gcaud1935.t1|Name=Gcaud1935.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=838bp
MSTTFGTKQISADQHASLTAPARDRSITVDDFIEQPVHADPESDSDADEN EPAVTPAQKRRRSAIRRSNSALSFESEAEEDEDGPPLKKQRSDPQISNPA SSPVATHANAPKAPSLQIPSPPTASTPSTKGFFSGRSPISPSRPTSASLF NVSDVVRQSNSLPQPLNSPKITPSPPPPSIASYVFPRSPNAPPLSIDPST PPHATPPRTTRPATQSDPSPPAPISPRLLSKKSFISPPADQSSSVVSRPA SSTDKVSSPAPHKTTVSAVTRTSPVTSVPTSTKLPAGTATNLVSSDPEPI SRSPKASAPPASKLPARPTLDISSNLAGNHPPSGAPPVSRASANPTQSSP QPNTPDTTASVQERNSPMQTPTPTAVPPGGSAQTPQPVRTIPGHANLPPL SHEGLINVRMPKPADDEDWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALA PAVADEPPSTICACMAPYPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNL SLAAQALHRPIIDAREGNPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRR RIVPSGLLSESVKIPFVCSGMFWVPESERNCTSHMDAETQRIEKYINQQA ALRGERRKALLESFGNGSDDESESSLRNDPSNVKLSARSSTHHPGQPKKP LSNHTAIPNGTSVQDPVPKTVPSVQANTESLIERTKAVSIGQPSPEIAQA NGFTPMEVDTMVAAQPVHSNTNRTQPGDDMTGTTPQQSTATQAQRPVLGP GTATETKKEDTKQEDSVSAPSMKPEDVQQELLVFIAELELDEPTEDLLTD LALTNNKTLAQIYIAFRSNKERFKRQAIRFAKRTAKP* back to topmRNA from alignment at NODE_105_length_50300_cov_4.471768:34928..37504- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1935.t1 ID=Gcaud1935.t1|Name=Gcaud1935.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2577bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:34928..37504- (Gracilaria caudata M_176_S67 male) ATGTCTACGACATTCGGCACAAAACAAATCTCCGCCGACCAACACGCATC
GCTCACAGCACCCGCACGAGACCGTTCTATAACGGTCGACGATTTTATTG
AGCAGCCAGTGCATGCCGACCCAGAATCGGACTCTGACGCAGACGAGAAC
GAGCCCGCTGTTACCCCCGCTCAGAAGAGACGTCGTTCGGCTATTCGCCG
CTCCAACTCGGCGCTCTCCTTCGAGAGTGAGGCTGAAGAAGACGAGGACG
GACCACCTCTGAAGAAGCAGCGTTCAGATCCGCAGATCTCAAACCCTGCT
TCATCGCCGGTCGCAACGCATGCAAACGCACCGAAGGCTCCTTCCCTGCA
AATTCCATCTCCTCCTACCGCAAGTACTCCGAGTACCAAGGGTTTCTTCT
CGGGTCGCTCTCCTATCTCGCCTAGTCGCCCTACTTCGGCTTCGTTGTTC
AACGTCAGTGACGTAGTACGCCAATCGAATTCTCTTCCACAGCCTCTGAA
TTCCCCGAAGATCACACCCAGCCCCCCACCTCCGTCTATTGCATCTTACG
TGTTCCCGAGGTCACCCAACGCCCCTCCTCTATCCATCGACCCGTCTACG
CCGCCACACGCCACTCCCCCGCGTACCACTCGACCCGCCACACAGTCTGA
CCCGTCGCCACCAGCTCCCATTTCTCCCAGGCTCTTGAGCAAAAAGTCTT
TCATAAGTCCTCCGGCGGATCAGTCTTCTTCGGTCGTGAGCAGACCTGCC
TCGTCTACTGATAAGGTCTCTTCACCAGCGCCTCACAAAACTACGGTTTC
AGCCGTCACACGCACATCCCCGGTTACTAGTGTGCCGACTTCTACCAAGC
TTCCTGCAGGAACGGCCACTAATCTTGTCTCCTCGGATCCAGAGCCCATT
TCGCGTTCTCCAAAGGCATCAGCTCCGCCCGCCTCAAAACTCCCAGCCCG
CCCTACTCTCGATATTTCCTCCAATCTCGCTGGGAATCACCCGCCATCAG
GAGCGCCACCTGTGTCCAGAGCTTCTGCCAACCCAACGCAATCATCGCCC
CAGCCTAATACGCCGGACACGACAGCATCTGTTCAGGAGCGTAACTCTCC
GATGCAGACCCCCACACCAACGGCGGTACCACCAGGTGGTTCTGCGCAAA
CCCCTCAACCAGTACGAACGATTCCCGGACATGCGAACTTGCCACCGCTA
TCACATGAGGGCCTCATTAATGTTCGCATGCCAAAGCCTGCTGATGATGA
GGACTGGGATCGCTTCGTTTTCTTTAAGCATAGACCGCGACGCCATGACT
TCGGAAAGAACTGCTATCTTTCTGACTATTCTCCTTTTGCGGCACTGGCT
CCAGCAGTAGCGGACGAACCACCTTCAACAATTTGTGCGGTATGTGGCGG
AGGTTATAATCTCATTCCTTGTAGCTCCTGCGTTTGCGCTTTTCATGCGA
AGTGTATGGCCCCCTATCCGGTCACGACCTCCCCATGGTATTGCAAGGGG
TGTCGCTCTGCCGGACTGCCGGATGGCCAACCGATACGGATACCGGACCC
TCCTTCAAATCTATCTCTCGCTGCACAGGCATTACATCGCCCTATCATTG
ACGCAAGGGAAGGCAACCCAATGGATTTGGTGCTGCATCCTTCCTTGATG
GCCATGTTTCGCGAGCATTACGGGGGACGTGATTGGCTCCAATGTTACAC
ATGCAAGCGACGGAGAATTGTCCCGAGCGGGTTACTCTCAGAGTCTGTGA
AGATCCCTTTCGTATGTAGCGGGATGTTTTGGGTACCTGAGAGCGAGCGG
AATTGTACGTCACATATGGACGCTGAAACGCAGCGCATTGAGAAGTACAT
TAACCAACAAGCGGCCCTGCGCGGCGAGCGAAGAAAGGCTCTACTGGAAA
GCTTTGGTAACGGTTCGGATGACGAAAGTGAGAGTTCGTTACGCAACGAC
CCGTCAAACGTGAAGCTGTCAGCAAGATCGAGCACTCATCATCCTGGACA
GCCAAAGAAGCCACTCTCCAATCACACAGCGATTCCAAACGGAACCTCTG
TTCAAGATCCGGTTCCAAAAACTGTCCCGTCAGTACAAGCCAACACTGAG
AGTCTCATTGAGCGAACAAAAGCTGTAAGTATTGGGCAACCGTCTCCCGA
AATCGCTCAAGCTAATGGATTTACCCCAATGGAAGTGGACACAATGGTTG
CAGCGCAACCCGTCCACTCAAATACGAACCGCACACAGCCTGGGGATGAT
ATGACTGGCACAACACCGCAACAGTCGACCGCTACTCAAGCTCAGAGACC
CGTGCTAGGCCCAGGGACCGCCACCGAGACCAAAAAGGAAGATACTAAAC
AAGAGGATAGCGTTAGTGCACCTAGCATGAAGCCAGAGGACGTACAACAG
GAATTGCTGGTATTCATTGCAGAGTTGGAACTTGACGAGCCTACGGAAGA
TTTATTAACAGATCTAGCTTTGACTAACAACAAGACTTTGGCTCAAATTT
ACATCGCATTCCGATCGAACAAGGAGCGATTCAAACGTCAAGCTATTCGA
TTCGCAAAAAGAACAGCAAAACCTTGA back to topCoding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:34928..37504- >Gcaud1935.t1 ID=Gcaud1935.t1|Name=Gcaud1935.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2514bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:34928..37504- (Gracilaria caudata M_176_S67 male) ATGTCTACGACATTCGGCACAAAACAAATCTCCGCCGACCAACACGCATC GCTCACAGCACCCGCACGAGACCGTTCTATAACGGTCGACGATTTTATTG AGCAGCCAGTGCATGCCGACCCAGAATCGGACTCTGACGCAGACGAGAAC GAGCCCGCTGTTACCCCCGCTCAGAAGAGACGTCGTTCGGCTATTCGCCG CTCCAACTCGGCGCTCTCCTTCGAGAGTGAGGCTGAAGAAGACGAGGACG GACCACCTCTGAAGAAGCAGCGTTCAGATCCGCAGATCTCAAACCCTGCT TCATCGCCGGTCGCAACGCATGCAAACGCACCGAAGGCTCCTTCCCTGCA AATTCCATCTCCTCCTACCGCAAGTACTCCGAGTACCAAGGGTTTCTTCT CGGGTCGCTCTCCTATCTCGCCTAGTCGCCCTACTTCGGCTTCGTTGTTC AACGTCAGTGACGTAGTACGCCAATCGAATTCTCTTCCACAGCCTCTGAA TTCCCCGAAGATCACACCCAGCCCCCCACCTCCGTCTATTGCATCTTACG TGTTCCCGAGGTCACCCAACGCCCCTCCTCTATCCATCGACCCGTCTACG CCGCCACACGCCACTCCCCCGCGTACCACTCGACCCGCCACACAGTCTGA CCCGTCGCCACCAGCTCCCATTTCTCCCAGGCTCTTGAGCAAAAAGTCTT TCATAAGTCCTCCGGCGGATCAGTCTTCTTCGGTCGTGAGCAGACCTGCC TCGTCTACTGATAAGGTCTCTTCACCAGCGCCTCACAAAACTACGGTTTC AGCCGTCACACGCACATCCCCGGTTACTAGTGTGCCGACTTCTACCAAGC TTCCTGCAGGAACGGCCACTAATCTTGTCTCCTCGGATCCAGAGCCCATT TCGCGTTCTCCAAAGGCATCAGCTCCGCCCGCCTCAAAACTCCCAGCCCG CCCTACTCTCGATATTTCCTCCAATCTCGCTGGGAATCACCCGCCATCAG GAGCGCCACCTGTGTCCAGAGCTTCTGCCAACCCAACGCAATCATCGCCC CAGCCTAATACGCCGGACACGACAGCATCTGTTCAGGAGCGTAACTCTCC GATGCAGACCCCCACACCAACGGCGGTACCACCAGGTGGTTCTGCGCAAA CCCCTCAACCAGTACGAACGATTCCCGGACATGCGAACTTGCCACCGCTA TCACATGAGGGCCTCATTAATGTTCGCATGCCAAAGCCTGCTGATGATGA GGACTGGGATCGCTTCGTTTTCTTTAAGCATAGACCGCGACGCCATGACT TCGGAAAGAACTGCTATCTTTCTGACTATTCTCCTTTTGCGGCACTGGCT CCAGCAGTAGCGGACGAACCACCTTCAACAATTTGTGCGTGTATGGCCCC CTATCCGGTCACGACCTCCCCATGGTATTGCAAGGGGTGTCGCTCTGCCG GACTGCCGGATGGCCAACCGATACGGATACCGGACCCTCCTTCAAATCTA TCTCTCGCTGCACAGGCATTACATCGCCCTATCATTGACGCAAGGGAAGG CAACCCAATGGATTTGGTGCTGCATCCTTCCTTGATGGCCATGTTTCGCG AGCATTACGGGGGACGTGATTGGCTCCAATGTTACACATGCAAGCGACGG AGAATTGTCCCGAGCGGGTTACTCTCAGAGTCTGTGAAGATCCCTTTCGT ATGTAGCGGGATGTTTTGGGTACCTGAGAGCGAGCGGAATTGTACGTCAC ATATGGACGCTGAAACGCAGCGCATTGAGAAGTACATTAACCAACAAGCG GCCCTGCGCGGCGAGCGAAGAAAGGCTCTACTGGAAAGCTTTGGTAACGG TTCGGATGACGAAAGTGAGAGTTCGTTACGCAACGACCCGTCAAACGTGA AGCTGTCAGCAAGATCGAGCACTCATCATCCTGGACAGCCAAAGAAGCCA CTCTCCAATCACACAGCGATTCCAAACGGAACCTCTGTTCAAGATCCGGT TCCAAAAACTGTCCCGTCAGTACAAGCCAACACTGAGAGTCTCATTGAGC GAACAAAAGCTGTAAGTATTGGGCAACCGTCTCCCGAAATCGCTCAAGCT AATGGATTTACCCCAATGGAAGTGGACACAATGGTTGCAGCGCAACCCGT CCACTCAAATACGAACCGCACACAGCCTGGGGATGATATGACTGGCACAA CACCGCAACAGTCGACCGCTACTCAAGCTCAGAGACCCGTGCTAGGCCCA GGGACCGCCACCGAGACCAAAAAGGAAGATACTAAACAAGAGGATAGCGT TAGTGCACCTAGCATGAAGCCAGAGGACGTACAACAGGAATTGCTGGTAT TCATTGCAGAGTTGGAACTTGACGAGCCTACGGAAGATTTATTAACAGAT CTAGCTTTGACTAACAACAAGACTTTGGCTCAAATTTACATCGCATTCCG ATCGAACAAGGAGCGATTCAAACGTCAAGCTATTCGATTCGCAAAAAGAA CAGCAAAACCTTGA back to top
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