Gcaud1935.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1935.t1
Unique NameGcaud1935.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length838
Homology
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BLAST of Gcaud1935.t1 vs. uniprot
Match: A0A2V3IPX5_9FLOR (CHD3-type chromatin-remodeling factor PICKLE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX5_9FLOR)

HSP 1 Score: 405 bits (1040), Expect = 6.530e-126
Identity = 300/751 (39.95%), Postives = 388/751 (51.66%), Query Frame = 0 
Query:    1 MSTTF--GTKQISADQHASLTAPARDRSITVDDFIEQPVHADPESDSDADENEPAVTPAQKRRRSAIRRSNSALSFESEAEEDEDGPPLKKQRSDPQ--ISNPASSPVATHANAPKAPSLQIPSPPTASTPSTKGFFSGRSPISPSRPTSA-----SLFNVSDVVRQSNSLPQPLNSPKITPSPPPPSIASYVFPRSPNA------PPLSIDPSTPPHAXXXXXXXXXXXSDPSPPAPISPRLLSKKSFISPPADQSSSVVSRPASSTDKVSSPAPHKTTVSAVTRTSPVTSVPTSTKLPAGTATNLVSSDPEPISRSPKASAPPASKLPARPTLDISSNLAGNHPPSGAPXXXXXXXXXTQSSP-QPNTPDTTASVQERNSPMQTPTPTAVPPGGSAQTPQPVRTIPGHANLPPLSHEGLINVRMPKPADDEDWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALAPAVADEPPSTICA---------------------CMAPYPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNLSLAAQALHRPIIDAREGNPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRRRIVPSGLLSESVKIPFVCSGMFWVPESERNCTSHMDAETQRIEKYINQQAALRGERRKALLE-SFGNGSDDESESSLRNDPSNVKLSARSSTHHPGQPKKPLSNHTAIPNGTSVQDPVPKTVPSVQANTESLIERTKAVSIGQPSPEIAQANG-FTPMEVDTMV 712
            MS +F  GTK+ISADQHASL+AP RDRSI+VDDF++Q V+ADPESD         VT AQKR RS IRRSNS+ S ES+A               P   ++ P SSP+      PKAPS     PP + TPS++     RSPIS + P +A     SL NV+       SLP PLNSPKITP+P  P + S   PRSPNA      P L+++P TPP +           +   PP P  P+                 +VS P         P P+ T ++     SP  SV  + KLP+      ++S P P + +P                                X         Q SP   ++PD   +VQ   SP                             + PL+H+ LIN+  PK  D  DWDR VFFKHRP+R+DFG + Y+SD+SPF+A+   V    PS++CA                     C++PYPVTT+PW+CKGCRSAG+PD +   IPDPP+NL+ AAQ LHRPI+DA+EGNPMDL LHP L+ MFR+ YGG DWLQC  CKRRR+V  G+LSESV +PF C   FW+P+S+R+C S MD  TQR EK+IN+QAALR  RRKAL E  FG+GSDDE ++ ++  P NVKLSA+       +    + N       T   +P+P  +     N             G  +P I   +  F  MEVD++V
Sbjct:    1 MSASFDQGTKRISADQHASLSAPPRDRSISVDDFLDQTVYADPESDXXXXXXXXPVTRAQKRPRSQIRRSNSSFSLESDAXXXXXXXXXXXXXXTPPTAVTTPVSSPLQ-----PKAPSPTXXRPPNSDTPSSRAASVSRSPISRA-PVAAPAGSLSLLNVTAFQPPQPSLPLPLNSPKITPAPVSPPLLSGASPRSPNALATPPAPSLTLNP-TPPTSTTPDVAFVSAKTAARPPKPTPPQ----------------PIVSTP---------PVPNHTPLTI----SP--SVSAAPKLPSP-----LTSKPAPTTSNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQNTLVQPVQPSPVHGSSPD--HAVQSTRSPQ----------------------------VAPLTHDHLINIWAPKVMDGSDWDRLVFFKHRPQRYDFGDSAYISDFSPFSAVVAEVGGSSPSSVCAVCGGAYNLTPCNGCVCAFHAKCVSPYPVTTAPWFCKGCRSAGVPDNKVPPIPDPPTNLTGAAQPLHRPIVDAQEGNPMDLTLHPGLLKMFRDQYGGHDWLQCSICKRRRLVMKGVLSESVDLPFNCENAFWLPQSDRHCQSQMDPATQRAEKFINEQAALRPVRRKALFEYGFGDGSDDE-DTIIKRSPKNVKLSAKPLCTRSNKEDTHVPNGVPASTHTRPSEPIPDPMQISDNN-------------GAENPRIVNTSRTFDEMEVDSIV 664
The following BLAST results are available for this feature:
BLAST of Gcaud1935.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPX5_9FLOR6.530e-12639.95CHD3-type chromatin-remodeling factor PICKLE n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 585..605
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 714..749
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 628..699
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 612..775
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..404
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:34928..37504 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1935.t1Gcaud1935.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 34928..37504 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1935.t1 ID=Gcaud1935.t1|Name=Gcaud1935.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=838bp
MSTTFGTKQISADQHASLTAPARDRSITVDDFIEQPVHADPESDSDADEN
EPAVTPAQKRRRSAIRRSNSALSFESEAEEDEDGPPLKKQRSDPQISNPA
SSPVATHANAPKAPSLQIPSPPTASTPSTKGFFSGRSPISPSRPTSASLF
NVSDVVRQSNSLPQPLNSPKITPSPPPPSIASYVFPRSPNAPPLSIDPST
PPHATPPRTTRPATQSDPSPPAPISPRLLSKKSFISPPADQSSSVVSRPA
SSTDKVSSPAPHKTTVSAVTRTSPVTSVPTSTKLPAGTATNLVSSDPEPI
SRSPKASAPPASKLPARPTLDISSNLAGNHPPSGAPPVSRASANPTQSSP
QPNTPDTTASVQERNSPMQTPTPTAVPPGGSAQTPQPVRTIPGHANLPPL
SHEGLINVRMPKPADDEDWDRFVFFKHRPRRHDFGKNCYLSDYSPFAALA
PAVADEPPSTICACMAPYPVTTSPWYCKGCRSAGLPDGQPIRIPDPPSNL
SLAAQALHRPIIDAREGNPMDLVLHPSLMAMFREHYGGRDWLQCYTCKRR
RIVPSGLLSESVKIPFVCSGMFWVPESERNCTSHMDAETQRIEKYINQQA
ALRGERRKALLESFGNGSDDESESSLRNDPSNVKLSARSSTHHPGQPKKP
LSNHTAIPNGTSVQDPVPKTVPSVQANTESLIERTKAVSIGQPSPEIAQA
NGFTPMEVDTMVAAQPVHSNTNRTQPGDDMTGTTPQQSTATQAQRPVLGP
GTATETKKEDTKQEDSVSAPSMKPEDVQQELLVFIAELELDEPTEDLLTD
LALTNNKTLAQIYIAFRSNKERFKRQAIRFAKRTAKP*
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