Gcaud1916.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1916.t1
Unique NameGcaud1916.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length192
Homology
BLAST of Gcaud1916.t1 vs. uniprot
Match: A0A2V3IDW3_9FLOR (Translocon-associated protein subunit gamma n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDW3_9FLOR)

HSP 1 Score: 237 bits (605), Expect = 3.200e-77
Identity = 126/170 (74.12%), Postives = 145/170 (85.29%), Query Frame = 0
Query:   22 DDFDGLLEDFGRRPSVGRRLLYVFFAVEAVAAAALFFVRVFLIDVNASPVTLAVSVLLSVVILSMSYHNLAFAQAARIRRTASPPTKGAFKGQLDRFEKAKARFESRISSAALWYSCAYNNALFMIVAPFLGLYMLSDKLSGDLNLLVSAAAAASLALFNSKSALKAIGE 191
            DD + L +DFGR+PS+ RRLLYVFFA+E VA   +FFVRVFLID ++S VTL+++  +S  +LS SYHNLAFA A+RIRRTASPPTKGAFKG +D+F  AK RFE RIS+AALWYSCAYNNALFMI+ PFL  YML+DKLSGDLNLLVS AAAASLALFNSKSALKAIGE
Sbjct:    4 DDIELLADDFGRKPSLLRRLLYVFFALEVVAVCTVFFVRVFLIDTSSSLVTLSIAAFISAAVLSASYHNLAFAHASRIRRTASPPTKGAFKGNMDQFGAAKLRFERRISNAALWYSCAYNNALFMILTPFLATYMLADKLSGDLNLLVSGAAAASLALFNSKSALKAIGE 173          
BLAST of Gcaud1916.t1 vs. uniprot
Match: R7QPN5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPN5_CHOCR)

HSP 1 Score: 220 bits (561), Expect = 1.530e-70
Identity = 113/170 (66.47%), Postives = 141/170 (82.94%), Query Frame = 0
Query:   22 DDFDGLLEDFGRRPSVGRRLLYVFFAVEAVAAAALFFVRVFLIDVNASPVTLAVSVLLSVVILSMSYHNLAFAQAARIRRTASPPTKGAFKGQLDRFEKAKARFESRISSAALWYSCAYNNALFMIVAPFLGLYMLSDKLSGDLNLLVSAAAAASLALFNSKSALKAIGE 191
            D+FD LL+DFGRRPSV +RL Y+  ++E V   A+ FVR+FL+ ++AS VTL +SVLL+ V+LS+SYHNLAFA+AAR+RR  SPPTKGA+KG    +EKA A FE  ISSA+LWYSCAYNNA+FMIV P LG+Y+L DK++GDLNLL+S AAAA+LALFNS +ALKAIGE
Sbjct:    3 DEFDDLLDDFGRRPSVLKRLFYILLSLEPVLVTAILFVRIFLVSISASQVTLVLSVLLAAVLLSLSYHNLAFAKAARLRRAGSPPTKGAYKGDKAAYEKAMASFEGSISSASLWYSCAYNNAIFMIVTPLLGMYLLPDKVAGDLNLLLSGAAAAALALFNSNTALKAIGE 172          
BLAST of Gcaud1916.t1 vs. uniprot
Match: A0A1X6PAP8_PORUM (Translocon-associated protein subunit gamma n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAP8_PORUM)

HSP 1 Score: 123 bits (309), Expect = 2.380e-32
Identity = 74/170 (43.53%), Postives = 101/170 (59.41%), Query Frame = 0
Query:   22 DDFDGLLEDFGRRPSVGRRLLYVFFAVEAVAAAALFFVRVFLIDVNASPVTLAVSVLLSVVILSMSYHNLAFAQAARIRRTASPPTKGAFKGQLDRFEKAKARFESRISSAALWYSCAYNNALFMIVAPFLGLYMLSDKLSGDLNLLVSAAAAASLALFNSKSALKAIGE 191
            +D D LL DFGR     +R+ Y   A    A   L F RVF +DV+ + +TL ++      +LS +YHNLAF  + R+R  + PPTK + KG   R   A A  E+ +  AA+ YS  YNNALF+  A F+G Y++  K+ G++N  VS  AAA  ALFNS+SALK IG+
Sbjct:    5 EDIDTLLTDFGRTAPPAKRVAYAAAAAVPAALPILLFSRVFSVDVSRAIITLVIAGAAVAAVLSAAYHNLAFTTSVRLRGRSVPPTKASVKGDKARHTAALASHEAALERAAVAYSLFYNNALFVAGALFVGFYVVGTKVPGEVNYAVSGLAAAGFALFNSRSALKNIGQ 174          
BLAST of Gcaud1916.t1 vs. uniprot
Match: A0A5J4YZ22_PORPP (Translocon-associated protein subunit gamma n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ22_PORPP)

HSP 1 Score: 110 bits (276), Expect = 2.310e-27
Identity = 65/172 (37.79%), Postives = 104/172 (60.47%), Query Frame = 0
Query:   15 VAMANENDDFDGLLEDFGRRPSVGRRLLYVFFAVEAVAAAALFFVRVFLIDVNASPVTLAVSVLLSVVILSMSYHNLAFAQAARIRRTASPPTKGAFKGQLDRFEKAKARFESRISSAALWYSCAYNNALFMI-VAPFLGLYMLSDKLSGDLNLLVSAAAAASLALFNSKSA 185
            +A   E+D+F G   D+GR   VG+RL+Y   A+  +    L +VRV  +D+ AS V +  +V+++ V+LS++YHN AFA++ ++R+   PP K AF+ + +  +KA    E+ I  +A+ YS  YNNA+F++ + PF G   LS  +   +N   +   AA LAL NS+SA
Sbjct:    1 MARKAEDDEFAGFEVDYGRTAGVGKRLMYWLLAILPINLPVLLYVRVLALDLQASGVLVGATVIIASVMLSLAYHNCAFAKSVKLRKGLEPPPKSAFRNRPEEHKKACDDLEANIRKSAVLYSVGYNNAIFLVCILPF-GFQFLSSLMETPMNFATAYTFAALLALVNSRSA 171          
The following BLAST results are available for this feature:
BLAST of Gcaud1916.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IDW3_9FLOR3.200e-7774.12Translocon-associated protein subunit gamma n=1 Ta... [more]
R7QPN5_CHOCR1.530e-7066.47Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PAP8_PORUM2.380e-3243.53Translocon-associated protein subunit gamma n=1 Ta... [more]
A0A5J4YZ22_PORPP2.310e-2737.79Translocon-associated protein subunit gamma n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009779Translocon-associated protein subunit gammaPFAMPF07074TRAP-gammacoord: 27..180
e-value: 3.8E-10
score: 39.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 181..191
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 92..132
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..157
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 158..162
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 65..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..40
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 163..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..91
NoneNo IPR availableTMHMMTMhelixcoord: 42..64
NoneNo IPR availableTMHMMTMhelixcoord: 132..154
NoneNo IPR availableTMHMMTMhelixcoord: 69..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:421..996 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1916.t1Gcaud1916.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 421..996 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1916.t1 ID=Gcaud1916.t1|Name=Gcaud1916.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=192bp
MSQGEATRRTDVPQVAMANENDDFDGLLEDFGRRPSVGRRLLYVFFAVEA
VAAAALFFVRVFLIDVNASPVTLAVSVLLSVVILSMSYHNLAFAQAARIR
RTASPPTKGAFKGQLDRFEKAKARFESRISSAALWYSCAYNNALFMIVAP
FLGLYMLSDKLSGDLNLLVSAAAAASLALFNSKSALKAIGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009779SSR3