Gcaud9302.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9302.t1
Unique Name	Gcaud9302.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1058_length_14481_cov_4.703058	contig	NODE_1058_length_14481_cov_4.703058:10420..11817 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5741.EDO80921
PFAMs	zf-C3HC4_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15693
GOs	GO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
Evalue	2.2e-06
EggNOG OGs	KOG4265@1\|root,KOG4265@2759\|Eukaryota
Description	ubiquitin-protein transferase activity
COG category	KL
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9302	Gcaud9302	Gracilaria caudata M_176_S67 male	gene	NODE_1058_length_14481_cov_4.703058 10420..11817 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9302.t1.stop1	Gcaud9302.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1058_length_14481_cov_4.703058 10420..10422 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9302.t1.CDS1	Gcaud9302.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1058_length_14481_cov_4.703058 10420..11817 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9302.t1.exon1	Gcaud9302.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1058_length_14481_cov_4.703058 10420..11817 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9302.t1.start1	Gcaud9302.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1058_length_14481_cov_4.703058 11815..11817 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9302.t1	Gcaud9302.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1058_length_14481_cov_4.703058 10420..11817 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1058_length_14481_cov_4.703058:10420..11817-
coding sequence from alignment at NODE_1058_length_14481_cov_4.703058:10420..11817-

mRNA sequence

>Gcaud9302.t1 ID=Gcaud9302.t1|Name=Gcaud9302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=466bp
MQSNTDSHQQTPQQSPQVEPHQHQRPDQQQQPSTPVVQPVATPLVEVNTT
TATHDLSPPLSPSNLSATPPLSPQLSEQPSPLSDSDDHSTPSSPNEKNSD
TGLLDTDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARA
RKVIISKPGCSDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKT
LVTKLMSKYPLPGAPSEPLPLEDLFSDGTDFSPNSFIGGMNVRLTVLRRT
SLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQKPR
VWACLTNDGLDSDPTTIDVKGAINAISPPDLRPKTHYFCSTGDHFSVGFR
SLAKDIVRMGRIARDEELANSIALEEARNLADHEAAGTLADHAAANLVIA
NNGIGVPPSHSSSNSHRAHNSNSRHHNGMGRTFSLRGLRDRGNHGQGLSL
SSFIAFNWFASSNES*

spliced messenger RNA

>Gcaud9302.t1 ID=Gcaud9302.t1|Name=Gcaud9302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_1058_length_14481_cov_4.703058:10420..11817- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCTAACACCGACTCTCACCAACAAACTCCGCAACAGTCACCACA
AGTCGAGCCGCATCAGCACCAAAGGCCAGATCAGCAGCAACAACCATCCA
CCCCGGTCGTGCAGCCGGTTGCAACCCCCCTCGTGGAGGTCAACACCACC
ACTGCCACCCATGATCTCTCACCACCCCTTTCTCCGTCCAATCTTTCCGC
CACACCGCCGCTCTCGCCGCAACTATCCGAACAACCTTCTCCGCTCTCTG
ATAGTGACGACCATTCCACGCCATCGTCCCCAAACGAGAAGAATTCCGAT
ACTGGTTTGTTAGATACGGATTCTAGTTGTGTCGTGTGCTTTGAGCGCCC
TACAAATGTCAAACTGGACCCTTGTGGTCATGCCAACTTGTGCGACGTCT
GTGTTAGTCGACTCGTTAAGAGGCGTTGCCCCACATGTCGTGCAAGGGCA
AGAAAGGTCATCATTAGCAAGCCCGGCTGCAGTGATGTCATCAAAGCCGT
CAGAGACATAATAGCGGAGAGAAAGCAGCGCGAGTCCAAGGTTTTGGAAG
ACACACTGCAAGTGGTCTTCCTAGGTCCCGAAAAGGTTGGAAAGAAAACA
CTTGTCACCAAGCTCATGAGCAAGTACCCGTTGCCAGGGGCTCCCAGTGA
ACCGCTACCGCTCGAGGATTTGTTCAGTGACGGCACAGATTTTTCACCGA
ATTCTTTCATTGGTGGCATGAACGTTCGTCTTACGGTTCTCAGAAGGACC
AGTCTCACGTCGAGAAGAATGATCTTGGACGATGTTCGAGTGTTGAAACC
GGATGTGCTCGTGTTGTGCTGCTCTGCACATGTCAATTCAACCTTTGACC
TTATCTTGAACTGGGATAAGATCCTACGTAACAACCTGCAAAAGCCGAGA
GTGTGGGCTTGTCTGACCAACGATGGTCTGGACAGTGATCCCACCACCAT
TGATGTCAAAGGCGCTATCAACGCCATTTCCCCGCCAGATCTTCGTCCCA
AGACCCACTACTTCTGCTCTACTGGTGATCACTTTTCTGTTGGCTTCCGT
TCTTTGGCCAAGGACATTGTGAGAATGGGAAGAATAGCGCGAGATGAAGA
GCTTGCCAATTCCATTGCTCTTGAAGAGGCCAGAAATCTTGCAGATCATG
AAGCAGCTGGTACCTTGGCTGACCATGCTGCAGCCAATCTTGTTATAGCG
AATAATGGAATTGGTGTACCGCCTTCTCATTCATCGTCGAACTCTCATCG
TGCACACAATAGTAATTCTAGACATCACAACGGTATGGGTCGCACGTTCT
CTTTAAGAGGGTTACGTGACCGCGGTAATCATGGGCAAGGTCTATCTCTT
TCGAGCTTCATTGCGTTTAACTGGTTTGCTAGTTCAAACGAATCATAG

protein sequence of Gcaud9302.t1

>Gcaud9302.t1 ID=Gcaud9302.t1|Name=Gcaud9302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=466bp
MQSNTDSHQQTPQQSPQVEPHQHQRPDQQQQPSTPVVQPVATPLVEVNTT
TATHDLSPPLSPSNLSATPPLSPQLSEQPSPLSDSDDHSTPSSPNEKNSD
TGLLDTDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARA
RKVIISKPGCSDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKT
LVTKLMSKYPLPGAPSEPLPLEDLFSDGTDFSPNSFIGGMNVRLTVLRRT
SLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQKPR
VWACLTNDGLDSDPTTIDVKGAINAISPPDLRPKTHYFCSTGDHFSVGFR
SLAKDIVRMGRIARDEELANSIALEEARNLADHEAAGTLADHAAANLVIA
NNGIGVPPSHSSSNSHRAHNSNSRHHNGMGRTFSLRGLRDRGNHGQGLSL
SSFIAFNWFASSNES*

mRNA from alignment at NODE_1058_length_14481_cov_4.703058:10420..11817-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9302.t1 ID=Gcaud9302.t1|Name=Gcaud9302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_1058_length_14481_cov_4.703058:10420..11817- (Gracilaria caudata M_176_S67 male)
ATGCAGTCTAACACCGACTCTCACCAACAAACTCCGCAACAGTCACCACA
AGTCGAGCCGCATCAGCACCAAAGGCCAGATCAGCAGCAACAACCATCCA
CCCCGGTCGTGCAGCCGGTTGCAACCCCCCTCGTGGAGGTCAACACCACC
ACTGCCACCCATGATCTCTCACCACCCCTTTCTCCGTCCAATCTTTCCGC
CACACCGCCGCTCTCGCCGCAACTATCCGAACAACCTTCTCCGCTCTCTG
ATAGTGACGACCATTCCACGCCATCGTCCCCAAACGAGAAGAATTCCGAT
ACTGGTTTGTTAGATACGGATTCTAGTTGTGTCGTGTGCTTTGAGCGCCC
TACAAATGTCAAACTGGACCCTTGTGGTCATGCCAACTTGTGCGACGTCT
GTGTTAGTCGACTCGTTAAGAGGCGTTGCCCCACATGTCGTGCAAGGGCA
AGAAAGGTCATCATTAGCAAGCCCGGCTGCAGTGATGTCATCAAAGCCGT
CAGAGACATAATAGCGGAGAGAAAGCAGCGCGAGTCCAAGGTTTTGGAAG
ACACACTGCAAGTGGTCTTCCTAGGTCCCGAAAAGGTTGGAAAGAAAACA
CTTGTCACCAAGCTCATGAGCAAGTACCCGTTGCCAGGGGCTCCCAGTGA
ACCGCTACCGCTCGAGGATTTGTTCAGTGACGGCACAGATTTTTCACCGA
ATTCTTTCATTGGTGGCATGAACGTTCGTCTTACGGTTCTCAGAAGGACC
AGTCTCACGTCGAGAAGAATGATCTTGGACGATGTTCGAGTGTTGAAACC
GGATGTGCTCGTGTTGTGCTGCTCTGCACATGTCAATTCAACCTTTGACC
TTATCTTGAACTGGGATAAGATCCTACGTAACAACCTGCAAAAGCCGAGA
GTGTGGGCTTGTCTGACCAACGATGGTCTGGACAGTGATCCCACCACCAT
TGATGTCAAAGGCGCTATCAACGCCATTTCCCCGCCAGATCTTCGTCCCA
AGACCCACTACTTCTGCTCTACTGGTGATCACTTTTCTGTTGGCTTCCGT
TCTTTGGCCAAGGACATTGTGAGAATGGGAAGAATAGCGCGAGATGAAGA
GCTTGCCAATTCCATTGCTCTTGAAGAGGCCAGAAATCTTGCAGATCATG
AAGCAGCTGGTACCTTGGCTGACCATGCTGCAGCCAATCTTGTTATAGCG
AATAATGGAATTGGTGTACCGCCTTCTCATTCATCGTCGAACTCTCATCG
TGCACACAATAGTAATTCTAGACATCACAACGGTATGGGTCGCACGTTCT
CTTTAAGAGGGTTACGTGACCGCGGTAATCATGGGCAAGGTCTATCTCTT
TCGAGCTTCATTGCGTTTAACTGGTTTGCTAGTTCAAACGAATCATAG

Coding sequence (CDS) from alignment at NODE_1058_length_14481_cov_4.703058:10420..11817-

>Gcaud9302.t1 ID=Gcaud9302.t1|Name=Gcaud9302.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1398bp|location=Sequence derived from alignment at NODE_1058_length_14481_cov_4.703058:10420..11817- (Gracilaria caudata M_176_S67 male)
ATGCAGTCTAACACCGACTCTCACCAACAAACTCCGCAACAGTCACCACA
AGTCGAGCCGCATCAGCACCAAAGGCCAGATCAGCAGCAACAACCATCCA
CCCCGGTCGTGCAGCCGGTTGCAACCCCCCTCGTGGAGGTCAACACCACC
ACTGCCACCCATGATCTCTCACCACCCCTTTCTCCGTCCAATCTTTCCGC
CACACCGCCGCTCTCGCCGCAACTATCCGAACAACCTTCTCCGCTCTCTG
ATAGTGACGACCATTCCACGCCATCGTCCCCAAACGAGAAGAATTCCGAT
ACTGGTTTGTTAGATACGGATTCTAGTTGTGTCGTGTGCTTTGAGCGCCC
TACAAATGTCAAACTGGACCCTTGTGGTCATGCCAACTTGTGCGACGTCT
GTGTTAGTCGACTCGTTAAGAGGCGTTGCCCCACATGTCGTGCAAGGGCA
AGAAAGGTCATCATTAGCAAGCCCGGCTGCAGTGATGTCATCAAAGCCGT
CAGAGACATAATAGCGGAGAGAAAGCAGCGCGAGTCCAAGGTTTTGGAAG
ACACACTGCAAGTGGTCTTCCTAGGTCCCGAAAAGGTTGGAAAGAAAACA
CTTGTCACCAAGCTCATGAGCAAGTACCCGTTGCCAGGGGCTCCCAGTGA
ACCGCTACCGCTCGAGGATTTGTTCAGTGACGGCACAGATTTTTCACCGA
ATTCTTTCATTGGTGGCATGAACGTTCGTCTTACGGTTCTCAGAAGGACC
AGTCTCACGTCGAGAAGAATGATCTTGGACGATGTTCGAGTGTTGAAACC
GGATGTGCTCGTGTTGTGCTGCTCTGCACATGTCAATTCAACCTTTGACC
TTATCTTGAACTGGGATAAGATCCTACGTAACAACCTGCAAAAGCCGAGA
GTGTGGGCTTGTCTGACCAACGATGGTCTGGACAGTGATCCCACCACCAT
TGATGTCAAAGGCGCTATCAACGCCATTTCCCCGCCAGATCTTCGTCCCA
AGACCCACTACTTCTGCTCTACTGGTGATCACTTTTCTGTTGGCTTCCGT
TCTTTGGCCAAGGACATTGTGAGAATGGGAAGAATAGCGCGAGATGAAGA
GCTTGCCAATTCCATTGCTCTTGAAGAGGCCAGAAATCTTGCAGATCATG
AAGCAGCTGGTACCTTGGCTGACCATGCTGCAGCCAATCTTGTTATAGCG
AATAATGGAATTGGTGTACCGCCTTCTCATTCATCGTCGAACTCTCATCG
TGCACACAATAGTAATTCTAGACATCACAACGGTATGGGTCGCACGTTCT
CTTTAAGAGGGTTACGTGACCGCGGTAATCATGGGCAAGGTCTATCTCTT
TCGAGCTTCATTGCGTTTAACTGGTTTGCTAGTTCAAACGAATCATAG