Gcaud9302.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9302.t1
Unique NameGcaud9302.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length466
Homology
BLAST of Gcaud9302.t1 vs. uniprot
Match: A0A2V3IY28_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY28_9FLOR)

HSP 1 Score: 632 bits (1631), Expect = 4.110e-224
Identity = 355/440 (80.68%), Postives = 385/440 (87.50%), Query Frame = 0
Query:   32 PSTPVVQPVATPLVEVNTTTATHDL-SPPLSPSNLSATXXXXXXLSEQPSPLSDSDDHSTPSSPNEKNSDTGLLDTDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIISKPGCSDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMSKYPLPGAPSEPLPLEDLFSDGTDFSPNSFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQ-KPRVWACLTNDGLDSDPTTIDVKGAINAISPPDLRPKTHYFCSTGDHFSVGFRSLAKDIVRMGRIARDEELANSIALEEARNLADHXXXXXXXXXXXXNLVIANNGIGVPPS-HSSSNSHRAHNSNSRHHN---GMGRTFSLRGLRDRGNHGQGLSLSSFIAFNWFASSNES 465
            P+TPV QP+ATPL+ +  +   +   SPPLSPS L   XXXXXX         DSD  STPSSP E NSDTGLLD+DSSCVVCFERPTNV LDPCGHANLCDVCVSRLVKRRCPTCRARARKV I KPGC+DVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLV KLM+KYPLPGAPSEPL LE+LFSDGTDFSPN+FI G NVRLTVLRRT+LTSRRMILDDVRVLKPDVLVLCCS+HV STF+LILNWDKILRNN Q KPRVWACLT D +D D TTIDVKGAI AI+P DLRPK HYFCSTG HFSVGFRSLAKD+VRMG IARDEELAN+IALEEARNLADHXXXXXXXXXXXXNLVIANNGIGVPPS H+SS++HR++NS SR+H+   G+GR+FSLRG RDRGNHGQGLSLS+ I +NWFA SN+S
Sbjct:   33 PATPVEQPLATPLLHILASPPDNTSPSPPLSPSILXXXXXXXXXXXXXXXXXXDSD-QSTPSSPKEHNSDTGLLDSDSSCVVCFERPTNVTLDPCGHANLCDVCVSRLVKRRCPTCRARARKVCIRKPGCNDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVRKLMTKYPLPGAPSEPLSLEELFSDGTDFSPNAFIDGKNVRLTVLRRTNLTSRRMILDDVRVLKPDVLVLCCSSHVRSTFELILNWDKILRNNFQQKPRVWACLTMDDVDCDSTTIDVKGAIGAIAPADLRPKAHYFCSTGGHFSVGFRSLAKDVVRMGGIARDEELANAIALEEARNLADHXXXXXXXXXXXXNLVIANNGIGVPPSAHTSSHAHRSNNSGSRNHHPHHGVGRSFSLRGFRDRGNHGQGLSLSNLIVWNWFAGSNDS 471          
BLAST of Gcaud9302.t1 vs. uniprot
Match: R7Q5N8_CHOCR (RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5N8_CHOCR)

HSP 1 Score: 448 bits (1153), Expect = 2.920e-152
Identity = 246/372 (66.13%), Postives = 282/372 (75.81%), Query Frame = 0
Query:  107 DSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIISKPGCSDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMSKYPLPGAP-SEPLPLE-DLFSDGTDFSPNSFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQKPRVWACLTNDGLDSDPTTI-----DVKGAINAISPPDLRPKTHYFCSTGDHFSVGFRSLAKDIVRMGRIARDEELANSIALEEARNLADHXXXXXXXXXXXXNLVIANNGIGVPPSHSSSNSHRAHNSNSRHHNGMGRTFSLRGLRDR------GNHGQGLSLSSFIAFNWFASSNES 465
            D++CVVCFER  NV LDPCGHANLCDVCVSRLVKRRCPTCRARARKV I +PG   V K VR++I ERK RESKVLEDTLQVVFLGPEKVGKKTLV KL+SK+P P +  +E    E D+FSDGTDFS N+ I G NVRLTVLRRT+LTSRRM+LDDVRVLKPDVLVLCCSAHV +TF+ IL+WDK+LRNN QKPR+WA LT D  D   TT      DV GAI+AI P DLRPK+H+ CS G+ FS+GFRSL KDIV +GRIARD+ELA SIALEEAR+LADH             LV ANNGI VP S +S   H +   NS   NG+GR+FSLRG R+R      G+ GQG+S+S+F  FNW A S+ES
Sbjct:   56 DAACVVCFERQPNVTLDPCGHANLCDVCVSRLVKRRCPTCRARARKVAIQRPGEQVVTKGVREVIQERKLRESKVLEDTLQVVFLGPEKVGKKTLVRKLISKFPHPTSQLNEDHHSELDVFSDGTDFSANAAIYGANVRLTVLRRTTLTSRRMVLDDVRVLKPDVLVLCCSAHVGATFNTILSWDKVLRNNFQKPRLWALLTLDDKDGPATTKFDTAHDVSGAISAIIPTDLRPKSHHICSLGEQFSIGFRSLPKDIVSLGRIARDQELAASIALEEARSLADHEAAGTIGDQAAAELVRANNGIEVPSSSTSVPGHGSRGGNSSRGNGVGRSFSLRGFRERNSNNPNGSSGQGISVSNF--FNWLAGSHES 425          
BLAST of Gcaud9302.t1 vs. uniprot
Match: A0A1X6NLT0_PORUM (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLT0_PORUM)

HSP 1 Score: 199 bits (507), Expect = 6.110e-54
Identity = 134/372 (36.02%), Postives = 186/372 (50.00%), Query Frame = 0
Query:  105 DTDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVII----SKPGCSDVIKAV-------------------RDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMSKYPLP------GAPSEPLPLEDLFS---------------------DGTDFSPNSFI-GGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSAHVN-STFDLILNWDKILRNNLQKPRVWACLTNDG------------------------------------------------------LDSDPTTIDVKG-AINAISPPDLRPKTHYFCSTGDHFSVGFRSLAKDIVRMGRIARDEELA 369
            D  S C++CFER  NV+L PC HAN+C  CV RLVKRRCPTCRAR R++ +    ++ G  D   A+                   R++I+ RKQRE   L+ TLQ+VF+GP  VGKK+LV KL +K+PL       GA +     +                         DGTDF PN  + GG+  RLTVLRRT LTSRRM+LDDVR+L+PD LVLCC+A    ++F  +L++D++LR ++  PR+WA +   G                                                      + SD T  D  G A+ +++PP +RP+  YF +    FS+G R+LA+D+V  GR  R+  +A
Sbjct:  172 DPASWCIICFERAPNVELRPCTHANICLDCVVRLVKRRCPTCRARVRRIRLLTADAEAGVDDSEAAIAAAAALGMPPTDAAGTVSLRELISARKQREVAALDSTLQIVFVGPPAVGKKSLVRKLCAKWPLRPPGGRGGAAASSAAADGAADXXXXXXXXXXXXADIGVNGNGDGTDFRPNVTLPGGIPARLTVLRRTLLTSRRMLLDDVRLLRPDALVLCCAAGDGCASFGELLSFDRVLRASIAAPRLWAVVDGGGALSVGGGLPSGGPDALWPSPAAATSGSWDGSSTSLGXXXXXXXXXGRSPVGAASVTSDATLRDFVGSALASVNPPSVRPRGLYFVTPSAPFSMGLRALARDLVDHGRSGREAAIA 543          
BLAST of Gcaud9302.t1 vs. uniprot
Match: A0A6T6ALF8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6ALF8_9RHOD)

HSP 1 Score: 124 bits (310), Expect = 9.430e-28
Identity = 85/293 (29.01%), Postives = 135/293 (46.08%), Query Frame = 0
Query:  107 DSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIISKPGCSDVIKA------------------------------------------VRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMSKYPLPGAPSEPLPLEDLFSDG--------------TDFSP----NSFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQKPRVWACLTNDGLDSDPTTIDVKGAIN-AIS--PPDLRPKTH 336
            + SC VC+ER   + L+PC H +LC+VCV+RL ++RCPTCR R  +        +DV  A                                          +RDI+ E++++E +  +  LQ++ +G  K  K+ L+   +  + L     +      L  DG               D  P    N+ + G  +RL+ L R   + RR++LDDV++ +PD +V+C S     +FD +L WD++LRNN   PR W  L  +G +S+ T  +++  +  AIS  P   RP TH
Sbjct:   42 EGSCCVCWERKATLFLEPCLHRHLCEVCVTRLWRKRCPTCRDRVYRAHFGNCSSADVTTALSRISLENGFAPEEEKESEEGESNTNGRREPPCAFGEGPCRLIRDIMREKREKEEEEWKGALQILLVGSPKEDKRDLIATAVGMFHLDRGTIQGSARGCLHPDGGREVHTNQSYDTSEDDALPCYRANAMLDGSLLRLSCLDRDVSSFRRILLDDVKLFRPDCIVICSSLSNRQSFDSLLLWDRVLRNNFSVPRFWVLL--EGEESNLTFPEIREQLGRAISTIPTISRPATH 332          
BLAST of Gcaud9302.t1 vs. uniprot
Match: A0A7S0G2R4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2R4_9RHOD)

HSP 1 Score: 106 bits (264), Expect = 5.730e-22
Identity = 69/231 (29.87%), Postives = 108/231 (46.75%), Query Frame = 0
Query:  110 CVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIISKPGCSDVIKAVR--DIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMS--------KYPLPGAPSEPLPLEDLFSDGTD----FSPNSFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQKPRVWACLTNDGLDSDPTTIDVKGAINAI 326
            C VC  +   VK  PCGH  +CD C+  L + RC  CR R   V        D  + ++  +    R + E+  L++T QV+FLGP  V  + LV +L S        ++            E+ F  G +    F  NS+I G   R + L+  +  +RR +      + PD++VLCC  H   +F  ++ WDK LR   + PR+W    + GLD  P  ++V G++  +
Sbjct:   15 CAVCLSQDAAVKFIPCGHRTVCDCCLPFLDEPRCIICRRRIELV-------EDGGRLMKWGEAFNGRLEAEAMDLQNTFQVLFLGPGSVSTRALVRELCSTLSSDNKRRFLRRNGRRNSTIREEGFVVGAEWNARFQCNSYIRGAKHRFSSLQVAATPTRRAVARIYEEIVPDMVVLCCDYHDPESFVNMVRWDKALRLRCKVPRMWVVQIHSGLDESPCVLNVAGSVEKV 238          
BLAST of Gcaud9302.t1 vs. uniprot
Match: A0A7S2ZAZ4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAZ4_9RHOD)

HSP 1 Score: 92.8 bits (229), Expect = 3.010e-17
Identity = 73/269 (27.14%), Postives = 118/269 (43.87%), Query Frame = 0
Query:  110 CVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARARKVIISKPGCSDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKTLVTKLMSKYPLPGAPSEPL----------PLEDLFSDGTDFSP----NSFIGGMNVRLTVLRRTSLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQKPRVWACLTNDGLDSDPTTIDVKGAINAI------SPPDLRPKTHYFCSTGDHFSVGFRSLAKDIVR 358
            C VC  +   VK  PC H  +CD C+  L +  C  CR   R + + + G  D +    +    R + E+  L++T QV+FLGP  V  + LV +L S   L      P             E+ F  G ++S     N +I G+  R + L+  +  +R  +      + PD++VLCC  H   +F  ++ WDK LR   + PR+W    + GL+     ++V G++  +      S     P++         F+VG   + K I R
Sbjct:   19 CSVCLSQDATVKFLPCEHRIVCDCCLPFLDEPHCIMCR---RHIDLVEDG--DRLVKWGEAFRGRLEAEAMDLQNTFQVLFLGPGSVSTRALVRELCST--LSSDNKRPFFRRNFRRSSTISEEEFVVGAEWSARFQCNGYIRGVRHRFSSLQVATTPTRGAVARIYEEIVPDMVVLCCDYHDPESFLNMVRWDKALRLRCKVPRMWIVQIHSGLEEPQFVLNVAGSVEKVLADAQASVSFEAPRSVQQVCVDGWFNVGLSEVVKAISR 280          
BLAST of Gcaud9302.t1 vs. uniprot
Match: A0A7S0ZUU8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZUU8_NOCSC)

HSP 1 Score: 63.2 bits (152), Expect = 3.650e-8
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0
Query:   80 SPLSDSDDHSTPS---------SPNEKNSDTGLLDTDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRA 148
            SP S +  HS PS         SP  + S   L D D++CV+CFE P  V+L+PCGH+  C  C  ++  R+CP CRA
Sbjct:   70 SPSSPNRRHSVPSTLSPKAPVDSPGRRRSAPALDDDDNTCVICFESPGGVRLEPCGHSLFCQACARKV--RKCPLCRA 145          
BLAST of Gcaud9302.t1 vs. uniprot
Match: A0A7S1AEH7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AEH7_NOCSC)

HSP 1 Score: 58.5 bits (140), Expect = 2.110e-6
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0
Query:  100 DTGLLDTDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRA 148
            +T   D D  CV+CFERP  V+L PCGH   C VC  ++  R+CP CRA
Sbjct:  120 ETESADEDDMCVICFERPGGVQLQPCGHDPFCRVCARQV--RKCPLCRA 166          
The following BLAST results are available for this feature:
BLAST of Gcaud9302.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IY28_9FLOR4.110e-22480.68RING-type domain-containing protein n=1 Tax=Gracil... [more]
R7Q5N8_CHOCR2.920e-15266.13RING-type domain-containing protein n=1 Tax=Chondr... [more]
A0A1X6NLT0_PORUM6.110e-5436.02RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A6T6ALF8_9RHOD9.430e-2829.01Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0G2R4_9RHOD5.730e-2229.87Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZAZ4_9RHOD3.010e-1727.14Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZUU8_NOCSC3.650e-842.31Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S1AEH7_NOCSC2.110e-651.02Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 110..146
e-value: 2.6E-5
score: 33.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 110..147
score: 11.574592
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 107..152
e-value: 1.3E-10
score: 40.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 405..434
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..102
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 103..151
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 84..155
e-value: 2.0E-13
score: 51.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 185..343

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1058_length_14481_cov_4.703058contigNODE_1058_length_14481_cov_4.703058:10420..11817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9302.t1Gcaud9302.t1Gracilaria caudata M_176_S67 malemRNANODE_1058_length_14481_cov_4.703058 10420..11817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9302.t1 ID=Gcaud9302.t1|Name=Gcaud9302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=466bp
MQSNTDSHQQTPQQSPQVEPHQHQRPDQQQQPSTPVVQPVATPLVEVNTT
TATHDLSPPLSPSNLSATPPLSPQLSEQPSPLSDSDDHSTPSSPNEKNSD
TGLLDTDSSCVVCFERPTNVKLDPCGHANLCDVCVSRLVKRRCPTCRARA
RKVIISKPGCSDVIKAVRDIIAERKQRESKVLEDTLQVVFLGPEKVGKKT
LVTKLMSKYPLPGAPSEPLPLEDLFSDGTDFSPNSFIGGMNVRLTVLRRT
SLTSRRMILDDVRVLKPDVLVLCCSAHVNSTFDLILNWDKILRNNLQKPR
VWACLTNDGLDSDPTTIDVKGAINAISPPDLRPKTHYFCSTGDHFSVGFR
SLAKDIVRMGRIARDEELANSIALEEARNLADHEAAGTLADHAAANLVIA
NNGIGVPPSHSSSNSHRAHNSNSRHHNGMGRTFSLRGLRDRGNHGQGLSL
SSFIAFNWFASSNES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR027417P-loop_NTPase